Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RbsR regulog to Shewanella halifaxensis HAW-EB4

Reference regulog properties
Source regulog: RbsR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella halifaxensis HAW-EB4
Orthologous TF(s) Shal_0583
Regulated genes 1
Built upon 4 sites [see more]
Predicted regulatory interactions in Shewanella halifaxensis HAW-EB4
Locus tag Position Score Sequence
Position: -80
Score: 6.3
Sequence: TTATCGAAACGTTTCGATCG
Locus tag: Shal_0578
Shal_0578 -80 6.3 TTATCGAAACGTTTCGATCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Shewanella pealeana ATCC 700345 Spea_0514 -126 6.2 ATATCGAAACGTTTCGATTA
-93 6.3 TTATCGAAACGTTTCGATCG
Shewanella halifaxensis HAW-EB4 Shal_0578 -113 6.2 ATATCGAAACGTTTCGATTA
-80 6.3 TTATCGAAACGTTTCGATCG