Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing mmsB gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -67
Score: 4.10177
Sequence: AACCGCGACCGCCATCACATTT
Locus tag: Sama_1375
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sama_1376
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sama_1377
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sama_1378
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sama_1379
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sama_1380
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sama_1381
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG -67 4.1 AACCGCGACCGCCATCACATTT Sama_1375
Shewanella halifaxensis HAW-EB4
Position: -138
Score: 4.15147
Sequence: AATGTTGAGCAAGATCACACTT
Locus tag: Shal_2878
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shal_2877
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shal_2876
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shal_2875
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shal_2874
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shal_2873
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shal_2872
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG -138 4.2 AATGTTGAGCAAGATCACACTT Shal_2878
Shewanella loihica PV-4
Position: -75
Score: 4.18355
Sequence: TTATTTGAACATGATCACGCTT
Locus tag: Shew_1667
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shew_1668
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shew_1669
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shew_1670
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shew_1671
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shew_1672
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shew_1673
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG -75 4.2 TTATTTGAACATGATCACGCTT Shew_1667
Shewanella pealeana ATCC 700345
Position: -138
Score: 4.52681
Sequence: AATATTGAGCAAGATCACATTT
Locus tag: Spea_2783
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Spea_2782
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Spea_2781
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Spea_2780
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Spea_2779
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Spea_2778
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Spea_2777
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Locus tag: Spea_2776
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG-fabG -138 4.5 AATATTGAGCAAGATCACATTT Spea_2783
Shewanella piezotolerans WP3
Position: -175
Score: 4.43722
Sequence: AATGTTGAGCGAGATCACATTT
Locus tag: swp_3387
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: swp_3386
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: swp_3385
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: swp_3384
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: swp_3383
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: swp_3382
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: swp_3381
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG -175 4.4 AATGTTGAGCGAGATCACATTT swp_3387
Shewanella sediminis HAW-EB3
Position: -92
Score: 4.26425
Sequence: TTAATTGAGCAAGATCACACTT
Locus tag: Ssed_1473
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Ssed_1474
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Ssed_1475
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Ssed_1476
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Ssed_1477
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Ssed_1478
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Ssed_1479
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB-mmsA-SO1679-SO1680-SO1681-mmsB-fabG -92 4.3 TTAATTGAGCAAGATCACACTT Ssed_1473