Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus subtilis subsp. subtilis str. NCIB 3610

Type Regulator Effector Pathway Genes Sites
TF AcoR Acetoin Acetoin utilization 1 1
TF AdaA DNA alkylation response 1 1
TF AlsR Acetate Acetoin production 2 2
TF AnsR Asparagine Asparagine degradation 1 1
TF AraR Arabinose Arabinose utilization 4 9
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 8 13
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 3
TF AseR Arsenite Arsenic resistance 1 1
TF BglR Beta-glucoside-6-phosphate Beta-glucosides utilization 2 2
TF BglZ Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 3 3
TF BkdR Branched-chain amino acid degradation 1 2
TF BltR Multidrug resistance 1 1
TF BmrR Multidrug resistance 1 1
TF BsdA Salicylate Salicylic acid resistance 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 75 92
TF CcpB Carbon catabolism 2 2
TF CcpC Citrate Citrate metabolism 3 3
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitR Citrate metabolism 2 2
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 86 160
TF ComA ComP, sensor histidine kinase (ComX) Competence 5 5
TF CsoR Copper ion, (Cu+) Copper resistance 3 3
TF CssR CssS, sensor histidine kinase Protein secretion stress response 2 4
TF CtsR Heat shock Heat shock response 2 6
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 9 9
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 2 3
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 2 2
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 1 1
TF DesR Cold shock response 1 1
TF ExuR Glucuronate; Galacturonate Glucuronate utilization; Galacturonate utilization 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 5
TF FapR Malonyl-CoA Fatty acid biosynthesis 5 6
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF Fnr Oxygen Anaerobic metabolism 5 6
TF FrlR Fructoselysine 6-phosphate Fructoselysine utilization 4 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 25 48
TF GamR Glucosamine-6-phosphate Glucosamine utilization 2 4
TF GanR Beta-galactosides Galactan utilization 2 2
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlcR 1 1
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 1 2
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 2 3
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GltR unknown 2 2
TF GlvR Maltose-6-phosphate Maltose utilization 1 1
TF GmuR Glucomannan utilization 1 1
TF GntR D-gluconate; D-glucono-delta-lactone Gluconate utilization 1 1
TF GudR Glucarate utilization; Galactarate utilization 2 2
TF GutR Sorbitol Sorbitol utilization 2 2
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 2 2
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF IolR 2-deoxy-5-keto-D-gluconate 6-phosphate Inositol utilization 1 1
TF IolR1 Inositol utilization 2 3
TF KdgR 2-keto-3-deoxygluconate Galacturonate utilization; Glucuronate utilization 2 4
TF KipR Sporulation 1 1
TF LevR Levan utilization 1 1
TF LexA DNA damage SOS response 24 31
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 1 1
TF LmrA Quercetin; Fisetin; Catechin Multidrug resistance 2 3
TF LutR L-lactate Lactate utilization 3 3
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 4 55
TF ManR ManP, mannose-specific enzyme IIBCA PTS component; HPr, phosphocarrier protein Mannose utilization 2 2
TF MdxR Maltose Maltodextrin utilization; Maltose utilization 2 2
TF MhqR 2-Methylhydroquinone and catechol resistance 4 5
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MsmR Alpha-galactosides Alpha-galactosides utilization 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 2
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 2 4
TF NtdR 3,3'-neotrehalosadiamine Neotrehalosadiamine biosynthesis 2 2
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 1 1
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 9 15
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 8 9
TF PutR Proline Proline utilization 1 1
TF QdoR Quercetin; Fisetin; Tamarixetin; Galangin Multidrug resistance 3 4
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 5 8
TF RhgR Rhamnogalacturonides utilization 1 1
TF RmgR Rhamnogalacturonides utilization 2 3
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 3 4
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF SinR SinI, antirepressor protein Biofilm formation 3 3
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 54 90
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF XylR Xylose Xylose utilization 3 6
TF YbzH Metabolite transport 2 2
TF YcnK Copper ion, (Cu+) Copper homeostasis 1 1
TF YczG Utilization of aromatic compounds 2 2
TF YdfD/YisV Metabolite transport 2 2
TF YdfF 2 2
TF YdfI Metabolite transport 1 1
TF YdfL Multidrug resistance 1 1
TF YetL Flavonoids Flavonoids response 2 2
TF YfmP Metal efflux 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhgD 1 1
TF YisR Metabolite transport 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 5 5
TF YrkD Multidrug resistance 1 2
TF YtcD 2 2
TF YtlI L-cystine transporter 6 11
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF YvbF/YvaV Osmotic stress response 4 4
TF YvfU YvfT, sensor histidine kinase Metabolite transport 1 1
TF YwbI Cell wall metabolism 2 2
TF YwrC Metal homeostasis 1 1
TF YybA Polyamine homeostasis 3 3
TF YybR/YdeP Multidrug resistance 5 5
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 6
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