Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Bacillus subtilis subsp. subtilis str. NCIB 3610

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. NCIB 3610
Orthologous TF(s) BsubsN3_010100014952
Regulated genes 9
Built upon 65 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. NCIB 3610
Locus tag Position Score Sequence
Position: -39
Score: 5.4
Sequence: TAATACCAATACAAATAGTCGGAAATT
Locus tag: BsubsN3_010100000370
BsubsN3_010100000370 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -45
Score: 6.4
Sequence: TAATACATATTAAATTTATCGGAATTA
Locus tag: BsubsN3_010100002534
BsubsN3_010100002534 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbM
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bacillus subtilis subsp. subtilis str. 168 BSU04520 -45 6.4 TAATACATATTAAATTTATCGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_004850 -82 6 TAATACTTATTAACTTTATCGGAATTA
Bacillus pumilus SAFR-032 BPUM_2341 -89 5.5 TAAATCCTATAAGTAAAGTGTGTTTTA
-61 4.9 TTATTCCGATTGGAAAAATCAGATATG
Bacillus licheniformis DSM 13 BLi00540 -45 5.9 TAATACTTATTAAATCTATCGGAATTT
Oceanobacillus iheyensis HTE831 OB0293 -45 5.5 TTATACCTATTGACTTACTAGGCATTA
Position: -55
Score: 5.9
Sequence: TAATTCTTATAAGAATACTGTGAATTA
Locus tag: BsubsN3_010100003994
BsubsN3_010100003994 -55 5.9 TAATTCTTATAAGAATACTGTGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3126
Ortholog function: Hypothetical protein
Bacillus halodurans C-125 BH3126 -142 4.8 TAAAACCCACTTGACAGATGGGGATTA
-50 4.6 TAAAACAGACTTTTCCGATCTGTTTTA
Paenibacillus sp. JDR-2 Pjdr2_4820 -96 4.7 CATAACCAACTAAACAGGTAGGAATAA
Position: -123
Score: 4.6
Sequence: TAAAAAAGAGTTGACATATCGGAATAA
Locus tag: BsubsN3_010100004839
BsubsN3_010100004839 -123 4.6 TAAAAAAGAGTTGACATATCGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuB
Ortholog function: Aliphatic sulfonate ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168 BSU08830 -167 4.6 TAAAAAAGAGTTGACATATCGGAATAA
Bacillus cereus ATCC 14579 BC2912 -174 5.7 TAAAACCTAGTTGACTTATCGGAAATA
Paenibacillus sp. JDR-2 Pjdr2_0756 -70 5.3 TAATTCCAACTATTCCAATAAGGAAAA
Position: -73
Score: 5.2
Sequence: TAATTCGCACTTGACCCATCGGAATTA
Locus tag: BsubsN3_010100004989
BsubsN3_010100004989 -73 5.2 TAATTCGCACTTGACCCATCGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcL
Ortholog function: Sodium-cystine symporter
Bacillus subtilis subsp. subtilis str. 168 BSU09130 -73 5.2 TAATTCGCACTTGACCCATCGGAATTA
Bacillus licheniformis DSM 13 BLi00975 -77 5.1 TAATTCCTACTTGACCAATCAGGTTTG
Bacillus cereus ATCC 14579 BC4242 -72 5.5 AATTTCATAGTTGACTTATAGGTTTTA
-39 4.8 TATATTCTATATAACAGATTGGAATTA
Bacillus clausii KSM-K16 ABC2897 -78 5.2 TAATTCCCACTTGACTCATATGATTAT
Oceanobacillus iheyensis HTE831 OB2714 -56 6.2 TAATTCGTAGTAAATTAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_6037 -148 5.1 AATTCCCCATAGAAATAGTCGGATTTA
-41 5 TAATTCCAATCAAACAACTTGGATTAG
Position: -49
Score: 6.1
Sequence: TAATCCATAGTATACTTATAGGAATTA
Locus tag: BsubsN3_010100014822
BsubsN3_010100014822 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrrT
Ortholog function: SAM-dependent methyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU27280 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Bacillus pumilus SAFR-032 BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Bacillus licheniformis DSM 13 BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Anoxybacillus flavithermus WK1 Aflv_0758 -36 6.4 TAATTCATACTATACTTATAGGAATTA
Geobacillus kaustophilus HTA426 GK2543 -51 5.9 AAAAACATACTATATTTATAGGAATTA
Bacillus cereus ATCC 14579 BC4369 -29 5.1 TAAAACCGATAAGAAAAAGGGGAATTT
Paenibacillus sp. JDR-2 Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
Position: -54
Score: 5.7
Sequence: AAAAGCTTAGTAAACAAATAGGAATTA
Locus tag: BsubsN3_010100015937
BsubsN3_010100015937 -54 5.7 AAAAGCTTAGTAAACAAATAGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytmI
Ortholog function: Putative N-acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU29390 -54 5.7 AAAAGCTTAGTAAACAAATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_030850 -54 5.3 CAAAGCTTAGTAAACAAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5233 -55 6.1 TAATTCTTAGTAAGTTTATAGGAATTA
Position: -125
Score: 5.7
Sequence: TAATTCCTATTTGTTTACTAAGCTTTT
Locus tag: BsubsN3_010100015942
BsubsN3_010100015942 -125 5.7 TAATTCCTATTTGTTTACTAAGCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytlI
Ortholog function: Transcriptional regulator, LysR family
Bacillus subtilis subsp. subtilis str. 168 BSU29400 -125 5.7 TAATTCCTATTTGTTTACTAAGCTTTT
Bacillus amyloliquefaciens FZB42 RBAM_030860 -100 5.3 TAATTCCAATTTGTTTACTAAGCTTTG
Position: -82
Score: 5.6
Sequence: TTATTCATATTAAACGACTAGGAATAT
Locus tag: BsubsN3_010100021232
BsubsN3_010100021232 -82 5.6 TTATTCATATTAAACGACTAGGAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeK
Ortholog function: Putative monooxygenase
Bacillus subtilis subsp. subtilis str. 168 BSU39520 -82 5.6 TTATTCATATTAAACGACTAGGAATAT
Bacillus amyloliquefaciens FZB42 RBAM_003900 -85 6 TTATTCTTATAAAATTACTAGGAAATA
Bacillus pumilus SAFR-032 BPUM_0345 -84 5.5 TAAAACCGATTAATTCAATCAGAAAAA
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