Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PerR regulog to Bacillus subtilis subsp. subtilis str. NCIB 3610

Reference regulog properties
Source regulog: PerR - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Oxidative stress response; Peroxide stress response
Effector: Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus subtilis subsp. subtilis str. NCIB 3610
Orthologous TF(s) BsubsN3_010100004779
Regulated genes 9
Built upon 129 sites [see more]
Predicted regulatory interactions in Bacillus subtilis subsp. subtilis str. NCIB 3610
Locus tag Position Score Sequence
Position: -60
Score: 4.7
Sequence: TTACACTAATTATAA
Position: -51
Score: 5
Sequence: TTATAAACATTACAA
Position: -34
Score: 4.2
Sequence: TAAGAATTTTTTTTA
Locus tag: BsubsN3_010100004779
BsubsN3_010100004779 -60 4.7 TTACACTAATTATAA
-51 5 TTATAAACATTACAA
-34 4.2 TAAGAATTTTTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: perR
Ortholog function: Transcriptional regulator of peroxide stress response, Fur family
Bacillus subtilis subsp. subtilis str. 168 BSU08730 -51 5 TTATAAACATTACAA
-34 4.2 TAAGAATTTTTTTTA
Bacillus amyloliquefaciens FZB42 RBAM_008820 -51 5.4 TTATAAACATTATAA
-34 4.4 TAATAATCTTTTTTA
Bacillus pumilus SAFR-032 BPUM_0827 -50 5.4 TTATAAAGATTATAA
Bacillus licheniformis DSM 13 BLi00900 -50 4.9 TTATAAACGTTATAA
-33 4.2 TAAGAATTTTTTTTA
Anoxybacillus flavithermus WK1 Aflv_0369 -38 5.5 TTATAAAAATTATAA
-15 5.5 TTATAATTTTTATAA
Geobacillus kaustophilus HTA426 GK0478 -61 5.5 TTATAAATATTATAA
-44 4.2 TGATAATTTTTTTCA
Bacillus cereus ATCC 14579 BC0518 -43 5.4 TTATAAGAATTATAA
Bacillus halodurans C-125 BH0951 -54 5.4 TTATAAAGATTATAA
Bacillus clausii KSM-K16 ABC1322 -50 5.2 TTATAATTAATATAA
Oceanobacillus iheyensis HTE831 OB0905 -66 5.3 TTATAAGGATTATAA
-49 4.3 TAATAATTTTATTAA
Paenibacillus sp. JDR-2 Pjdr2_1094 -209 4.1 TTGGAAGCATTACAA
Position: -78
Score: 6
Sequence: TTATAATAATTATAA
Locus tag: BsubsN3_010100004834
BsubsN3_010100004834 -78 6 TTATAATAATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: katA
Ortholog function: Catalase (EC 1.11.1.6)
Bacillus subtilis subsp. subtilis str. 168 BSU08820 -78 6 TTATAATAATTATAA
Bacillus amyloliquefaciens FZB42 RBAM_009090 -78 5.9 TTATAATCATTATAA
Bacillus licheniformis DSM 13 BLi04113 -87 6 TTATAATAATTATAA
Oceanobacillus iheyensis HTE831 OB0633 -98 5.2 TTAAAATAATTGTAA
Position: -65
Score: 4.5
Sequence: TTAGAGTAATTTCAA
Locus tag: BsubsN3_010100006282
BsubsN3_010100006282 -65 4.5 TTAGAGTAATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxA
Ortholog function: Transcriptional regulator
Bacillus subtilis subsp. subtilis str. 168 BSU11500 -65 4.5 TTAGAGTAATTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_011500 -90 4.3 GTATAATACCTATAA
-64 4.5 TTAAAGTCATTTCAA
Bacillus pumilus SAFR-032 BPUM_1077 -91 4.8 GTATAATCACTATAA
-65 4.9 TTAGAACAATTTTAA
Bacillus licheniformis DSM 13 BLi01238 -62 4.5 TTAGAGTTATTTCAA
Anoxybacillus flavithermus WK1 Aflv_2127 -75 5 TTAAAGTCATTTTAA
Geobacillus kaustophilus HTA426 GK0817 -165 4.5 TTAAAGTCATTTCAA
Bacillus cereus ATCC 14579 BC1188 -181 4.9 GTATAATGATTATAG
Oceanobacillus iheyensis HTE831 OB1213 -72 4.8 TTAGACTAATTTTAA
Position: -179
Score: 4.8
Sequence: TGATAATTATTATCA
Position: -156
Score: 5.7
Sequence: TTAAAATAATTATAA
Locus tag: BsubsN3_010100007617
BsubsN3_010100007617 -179 4.8 TGATAATTATTATCA
-156 5.7 TTAAAATAATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zosA
Ortholog function: Zn(2+)-translocating P-type ATPase
Bacillus subtilis subsp. subtilis str. 168 BSU13850 -179 4.8 TGATAATTATTATCA
-156 5.7 TTAAAATAATTATAA
Bacillus amyloliquefaciens FZB42 RBAM_013620 -177 4.8 TGATAATTATTATCA
-154 5.3 TTAAAACAATTATAA
Bacillus pumilus SAFR-032 BPUM_1275 -179 4.8 TGATAATTATTATCA
-156 5.6 TTATAATAATTATTA
-36 4.5 TGAAAATCATTATCA
Bacillus licheniformis DSM 13 BLi01593 -200 5.6 TTATAATAATTATTA
Bacillus cereus ATCC 14579 BC0453 -144 4.6 ATAGAATAATTACAA
-127 4.3 TAATAACTATTAAAA
Bacillus halodurans C-125 BH0744 -206 4.4 CAATAATTTTTATTA
-189 5 TTAAAATTATTATTG
-83 4.3 TAATGATGATTATTA
Bacillus clausii KSM-K16 ABC3349 -150 4.8 TGATAATTATTATCA
-30 4.4 TTAAAATAATTGAAA
Position: -54
Score: 6
Sequence: TTATAATTATTATAA
Locus tag: BsubsN3_010100010337
BsubsN3_010100010337 -54 6 TTATAATTATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yozI
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU18870 -162 4.1 GTATAAGTATAATAA
-54 6 TTATAATTATTATAA
Position: -76
Score: 5.6
Sequence: TTATAATAATTATAG
Locus tag: BsubsN3_010100012827
BsubsN3_010100012827 -76 5.6 TTATAATAATTATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Transcriptional regulator for iron transport and metabolism
Bacillus subtilis subsp. subtilis str. 168 BSU23520 -116 5.2 TTAAAATCATTATTA
-76 5.6 TTATAATAATTATAG
Bacillus amyloliquefaciens FZB42 RBAM_021640 -116 5 TTAGAATGATTATCA
-76 5.6 TTATAATAATTATAG
Bacillus pumilus SAFR-032 BPUM_2084 -116 5 TTATAATCGTTATTA
-76 5.3 TTAAAATGATTATAG
Bacillus licheniformis DSM 13 BLi02503 -117 5.5 TTATAATGATTATTA
-77 5.5 TTATAATGATTATAG
Anoxybacillus flavithermus WK1 Aflv_0995 -236 4.3 GAAAAATAATTATTA
-219 4.6 TAATAATCATTTTAT
-196 5 TTATAATCATTTTAT
Geobacillus kaustophilus HTA426 GK2317 -100 4.4 TAATAACCATTATCA
-77 4.1 TAATAGTGATTTTAC
Bacillus cereus ATCC 14579 BC4091 -99 4.5 TGAGAATAATTATCA
Bacillus halodurans C-125 BH1527 -118 4.3 TTATAACAAATATTA
-101 4.4 TAATAATAATTATCT
-77 5.1 TAATAATCATTATTA
Bacillus clausii KSM-K16 ABC1780 -124 4.9 TTAGAATAATTCCAA
-83 4.7 TTGGAATCATTATTA
Oceanobacillus iheyensis HTE831 OB1849 -94 6 TTATAATTATTATAA
Paenibacillus sp. JDR-2 Pjdr2_1270 -117 4.1 GTGTAATAATGATAA
-91 5.7 TTATAATTATTCTAA
-75 5.5 TTATAATCATTCTAA
Position: -79
Score: 6
Sequence: TTATAATTATTATAA
Position: -49
Score: 5.5
Sequence: TTAGAATGATTATAA
Locus tag: BsubsN3_010100015297
BsubsN3_010100015297 -79 6 TTATAATTATTATAA
-49 5.5 TTAGAATGATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemA
Ortholog function: Glutamyl-tRNA reductase (EC 1.2.1.70)
Bacillus subtilis subsp. subtilis str. 168 BSU28170 -79 6 TTATAATTATTATAA
-49 5.5 TTAGAATGATTATAA
Bacillus amyloliquefaciens FZB42 RBAM_025230 -69 5.9 TTATAATCATTATAA
-39 5.5 TTAGAATGATTATAA
Bacillus pumilus SAFR-032 BPUM_2458 -79 5.9 TTATAATCATTATAA
-49 5.5 TTGTAATTATTATAA
Bacillus licheniformis DSM 13 BLi02947 -78 4.4 TTATAATCGTTTTGA
-48 5.5 TTATAATCATTCTAA
Bacillus cereus ATCC 14579 BC4473 -175 5.9 TTATAATCATTATAA
Bacillus halodurans C-125 BH3048 -249 5.3 TAATAATAATTCTAA
-83 4.1 TTAGACATGTTATAA
Bacillus clausii KSM-K16 ABC2632 -93 4.1 TTAGACATGTTATAA
Oceanobacillus iheyensis HTE831 OB2070 -66 4.8 TTATAATAAATATTA
-49 5.1 TTATAATAATATTAA
Paenibacillus sp. JDR-2 Pjdr2_4440 -47 5.5 TTATAATCATTCTAA
Position: -83
Score: 6
Sequence: TTATAATTATTATAA
Locus tag: BsubsN3_010100017817
BsubsN3_010100017817 -83 6 TTATAATTATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrgA
Ortholog function: Metalloregulation DNA-binding stress protein
Bacillus subtilis subsp. subtilis str. 168 BSU32990 -83 6 TTATAATTATTATAA
Bacillus amyloliquefaciens FZB42 RBAM_030100 -76 6 TTATAATTATTATAA
Bacillus licheniformis DSM 13 BLi03480 -88 5.7 TTAAAATAATTATAA
-54 4.3 TTGTATTTGTTATAA
Position: -60
Score: 4.9
Sequence: TTAGAATTATTATTG
Locus tag: BsubsN3_010100021527
BsubsN3_010100021527 -60 4.9 TTAGAATTATTATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ahpC
Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Bacillus subtilis subsp. subtilis str. 168 BSU40090 -60 4.9 TTAGAATTATTATTG
Bacillus amyloliquefaciens FZB42 RBAM_036960 -79 4.9 TTAGAATTATTATTG
Bacillus licheniformis DSM 13 BLi04291 -70 5.6 TTATAATAATTATAG
Anoxybacillus flavithermus WK1 Aflv_2773 -100 5.5 TTATAATTGTTATAA
Geobacillus kaustophilus HTA426 GK2575 -44 5.7 TTAAAATTATTATAA
Bacillus cereus ATCC 14579 BC0377 -88 5.3 TTAGAATTATTATAG
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