Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bacillus cereus ATCC 14579

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcoR Acetoin Acetoin utilization 1 1
TF AdaA DNA alkylation response 2 2
TF AnsR Asparagine Asparagine degradation 2 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 8 9
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 3
TF BC0230 2 2
TF BC2903 Multidrug resistance; Multidrug efflux 2 2
TF BC3039 Metabolite transport 2 4
TF BC5402 2 2
TF BH0651 Multidrug resistance; Multidrug efflux 1 1
TF BH1250 Sugar utilization 2 3
TF BglZ Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 3 4
TF BkdR Branched-chain amino acid degradation 2 4
TF CcpA HPr, phosphocarrier protein Carbon catabolism 59 23
TF CcpC Citrate Citrate metabolism 3 1
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 2 1
TF CitT Citrate Citrate utilization 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 79 40
TF CsoR Copper ion, (Cu+) Copper resistance 3 2
TF CtsR Heat shock Heat shock response 6 5
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 10 7
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 3 2
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 1 2
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 8 7
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF Fnr Oxygen Anaerobic metabolism 4 3
TF FruR Fructose-6-phosphate Fructose utilization 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 24
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 2 2
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 4 8
TF HrcA Heat shock Heat shock response 2 2
TF KipR Sporulation 2 2
TF LexA DNA damage SOS response 17 8
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 2 1
TF LytT Penicillin resistance 1 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 3
TF MhqR 2-Methylhydroquinone and catechol resistance 7 6
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 1
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 12 13
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 13 9
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 9 5
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 5 1
TF ScrR2 Sucrose-6-phosphate Sucrose utilization 1 1
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF SinR SinI, antirepressor protein Biofilm formation 1 1
TF TreR Trehalose-6-phosphate Trehalose utilization 2 2
TF YczG Utilization of aromatic compounds 3 2
TF YdfD/YisV Metabolite transport 4 4
TF YdfL Multidrug resistance 1 1
TF YfmP Metal efflux 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhdI/YdeL Metabolite transport 2 2
TF YhgD 2 3
TF YodB/CatR Diamide; Quinone Oxidative stress response 9 8
TF YrkD Multidrug resistance 6 5
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF YvfU YvfT, sensor histidine kinase Metabolite transport 1 1
TF YybR/YdeP Multidrug resistance 5 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 3 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 3 2
RNA Glycine Glycine Glycine metabolism 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 4 4
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 9 6
RNA PyrR PyrR Pyrimidine metabolism 4 4
RNA SAM S-adenosylmethionine Methionine biosynthesis 20 17
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 4 2
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 3 2
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 6 4
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 6 2
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 3 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 3 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 5 5
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 3
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 7 6
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 8 7
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 2 2
RNA ylbH 1 1
RNA yybP-ykoY 3 2
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