Regulon of SAM in Bacillus cereus ATCC 14579
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Regulog: | SAM - Bacillales |
| Under regulation: | |
| - Genes | 45 |
| - Operons | 17 |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -181
Score: 89.6 Sequence: ACTCTTATTGAGAGC...
Locus tag: BC4251
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
Locus tag: BC4250
Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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metF
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) / Homolog of homocysteine-binding domain
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metH
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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Position: -169
Score: 82.5 Sequence: TCTTATCAAGAGCAG...
Locus tag: BC4036
Name: mtnW Funciton: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase
Locus tag: BC4037
Name: mtnX Funciton: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
Locus tag: BC4038
Name: mtnB Funciton: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
Locus tag: BC4039
Name: mtnD Funciton: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) |
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mtnW
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2,3-diketo-5-methylthiopentyl-1-phosphate enolase
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mtnX
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2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
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mtnB
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Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
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mtnD
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1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54)
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Position: -195
Score: 87.6 Sequence: TGTCTTATCAAGAGC...
Locus tag: BC0768
Name: mtrB Funciton: Methythioribose ABC transport system, substrate-binding protein
Locus tag: BC0767
Name: mtrA Funciton: Methythioribose ABC transport system, ATP-binding protein
Locus tag: BC0766
Name: mtrC Funciton: Methythioribose ABC transport system, permease protein |
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mtrB
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Methythioribose ABC transport system, substrate-binding protein
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mtrA
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Methythioribose ABC transport system, ATP-binding protein
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mtrC
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Methythioribose ABC transport system, permease protein
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Position: -232
Score: 73.5 Sequence: ACTCTTATCAAGAGC...
Locus tag: BC4033
Name: mtnK Funciton: 5-methylthioribose kinase (EC 2.7.1.100)
Locus tag: BC4032
Name: mtnA Funciton: Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) |
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mtnK
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5-methylthioribose kinase (EC 2.7.1.100)
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mtnA
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Methylthioribose-1-phosphate isomerase (EC 5.3.1.23)
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Position: -199
Score: 80.2 Sequence: TCTTATAAAGAGAGG...
Locus tag: BC1434
Name: metT Funciton: Methionine transporter MetT |
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metT
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Methionine transporter MetT
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Position: -238
Score: 85.9 Sequence: CATTGTATCAAGAGA...
Locus tag: BC0216
Name: oppA1 Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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oppA1
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Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
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Position: -292
Score: 75.5 Sequence: TCTCTTATCCCGAGC...
Locus tag: BC4761
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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metK
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S-adenosylmethionine synthetase (EC 2.5.1.6)
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Position: -419
Score: 93 Sequence: TCTCTTATCAAGAGA...
Locus tag: BC4987
Name: metN Funciton: Methionine ABC transporter ATP-binding protein
Locus tag: BC4986
Name: metP Funciton: Methionine ABC transporter permease protein
Locus tag: BC4985
Name: metQ Funciton: Methionine ABC transporter substrate-binding protein
Locus tag: BC4984
Name: metQ Funciton: Methionine ABC transporter substrate-binding protein |
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metN
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Methionine ABC transporter ATP-binding protein
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metP
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Methionine ABC transporter permease protein
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metQ
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Methionine ABC transporter substrate-binding protein
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metQ
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Methionine ABC transporter substrate-binding protein
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Position: -229
Score: 90.4 Sequence: TCTTATCCAGAGAGG...
Locus tag: BC0346
Name: metN3 Funciton: Methionine ABC transporter ATP-binding protein
Locus tag: BC0347
Name: metP3 Funciton: Methionine ABC transporter permease protein
Locus tag: BC0348
Name: metQ3 Funciton: Methionine ABC transporter substrate-binding protein |
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metN3
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Methionine ABC transporter ATP-binding protein
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metP3
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Methionine ABC transporter permease protein
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metQ3
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Methionine ABC transporter substrate-binding protein
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Position: -191
Score: 89.2 Sequence: ATTCTTATCACGAGA...
Locus tag: BC3176
Name: acy Funciton: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) |
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acy
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N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
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Position: -202
Score: 96.5 Sequence: ACTCTTATCAAGAGT...
Locus tag: BC0198
Name: metQ2 Funciton: Methionine ABC transporter substrate-binding protein
Locus tag: BC0197
Name: metN2 Funciton: Methionine ABC transporter ATP-binding protein
Locus tag: BC0196
Name: metP2 Funciton: Methionine ABC transporter permease protein |
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metQ2
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Methionine ABC transporter substrate-binding protein
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metN2
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Methionine ABC transporter ATP-binding protein
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metP2
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Methionine ABC transporter permease protein
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Position: -412
Score: 95.5 Sequence: GCTTATCAAGAGAAG...
Locus tag: BC1421
Name: cysH Funciton: Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)
Locus tag: BC1422
Name: sat Funciton: Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
Locus tag: BC1423
Name: cysC Funciton: Adenylylsulfate kinase (EC 2.7.1.25)
Locus tag: BC1424
Name: cysI Funciton: Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1)
Locus tag: BC1425
Name: null Funciton: hypothetical protein
Locus tag: BC1426
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: BC1427
Name: sirB Funciton: Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
Locus tag: BC1428
Name: sirC Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
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cysH
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Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10)
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sat
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Sulfate adenylyltransferase, dissimilatory-type (EC 2.7.7.4)
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cysC
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Adenylylsulfate kinase (EC 2.7.1.25)
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cysI
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Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1)
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hypothetical protein
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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sirB
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Sirohydrochlorin ferrochelatase (EC 4.99.1.4)
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sirC
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
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Position: -231
Score: 90.2 Sequence: AGTCTTATCAAGAAA...
Locus tag: BC5406
Name: metY3 Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Locus tag: BC5405
Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
Locus tag: BC5404
Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3) |
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metY3
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O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
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metA
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Homoserine O-succinyltransferase (EC 2.3.1.46)
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hom
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Homoserine dehydrogenase (EC 1.1.1.3)
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Position: -204
Score: 94.5 Sequence: TCTTATCTAGAGAGG...
Locus tag: BC4253
Name: metI Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: BC4254
Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8) |
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metI
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Cystathionine gamma-synthase (EC 2.5.1.48)
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metC
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Cystathionine beta-lyase (EC 4.4.1.8)
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Position: -199
Score: 87.9 Sequence: TTCTTTATCAAGAGA...
Locus tag: BC0395
Name: BC0395 Funciton: Putative formamidase |
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BC0395
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Putative formamidase
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Position: -255
Score: 78.5 Sequence: ACTTATCCAGAGAGG...
Locus tag: BC2624
Name: mtsA Funciton: Substrate-specific component MtsA of methionine-regulated ECF transporter |
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mtsA
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Substrate-specific component MtsA of methionine-regulated ECF transporter
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Position: -241
Score: 88.3 Sequence: ACTTATCCAGAGAGG...
Locus tag: BC0207
Name: oppB Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: BC0208
Name: oppC Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Locus tag: BC0209
Name: oppD Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: BC0210
Name: oppF Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Locus tag: BC0211
Name: oppA Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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oppB
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Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
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oppC
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Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
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oppD
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Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
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oppF
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Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
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oppA
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Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |