Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Delftia acidovorans SPH-1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF Aave_3430 2 2
TF Aave_3515 3 4
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 3 2
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF Daci_0288 1 1
TF Daci_0595 Metabolite transport 5 2
TF Daci_1890 1 1
TF Daci_3053 Glycolate utilization; Lactate utilization 4 4
TF Daci_3836 1 1
TF Daci_4286 1 1
TF FadP Fatty acid degradation 6 4
TF FruR2 Fructose-1-phosphate Fructose utilization 2 4
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GguR Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization 3 3
TF GntR Gluconate Gluconate utilization 2 3
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 7 5
TF HrcA Heat shock Heat shock response 2 2
TF HutC cis-Urocanic acid Histidine utilization 3 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 1
TF LexA DNA damage SOS response 7 6
TF LiuR Branched-chain amino acid degradation 5 6
TF LldR L-lactate Lactate utilization 1 2
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF MetR Homocysteine Methionine biosynthesis 1 1
TF ModE Molybdate Molybdenum homeostasis 2 2
TF ModE2 Molybdate Molybdopterin biosynthesis 2 2
TF NadQ NAD biosynthesis 2 3
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 3 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 7
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 4 4
TF PdxQ Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PdxQ2 Metabolite transport; Pyridoxine/pyridoxal homeostasis 3 2
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 2 1
TF PdxR Pyridoxine/pyridoxal homeostasis 1 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF SdhR Tricarboxylic acid cycle 4 4
TF SoxR Paraquat Superoxide stress response 4 3
TF TalR L-talarate L-talarate utilization 2 4
TF TauR Taurine Taurine utilization 3 3
TF UreR 3 5
TF VanR Vanillate Vanillate utilization 2 3
TF YdcR 2 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
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