Regulons of Delftia acidovorans SPH-1
|
Allows to visualize regulome content in the context of metabolic pathways |
|
Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
TF |
Aave_3430 |
|
|
2 |
2 |
TF |
Aave_3515 |
|
|
3 |
4 |
TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
3 |
2 |
TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
2 |
2 |
TF |
Daci_0288 |
|
|
1 |
1 |
TF |
Daci_0595 |
|
Metabolite transport |
5 |
2 |
TF |
Daci_1890 |
|
|
1 |
1 |
TF |
Daci_3053 |
|
Glycolate utilization; Lactate utilization |
4 |
4 |
TF |
Daci_3836 |
|
|
1 |
1 |
TF |
Daci_4286 |
|
|
1 |
1 |
TF |
FadP |
|
Fatty acid degradation |
6 |
4 |
TF |
FruR2 |
Fructose-1-phosphate |
Fructose utilization |
2 |
4 |
TF |
GabR |
Gamma-aminobutyric acid |
Gamma-aminobutyrate utilization |
1 |
1 |
TF |
GguR |
|
Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
3 |
3 |
TF |
GntR |
Gluconate |
Gluconate utilization |
2 |
3 |
TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
7 |
5 |
TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
3 |
4 |
TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
1 |
TF |
LexA |
DNA damage |
SOS response |
7 |
6 |
TF |
LiuR |
|
Branched-chain amino acid degradation |
5 |
6 |
TF |
LldR |
L-lactate |
Lactate utilization |
1 |
2 |
TF |
MerR |
Mercury ion, (Hg2+) |
Mercury resistance |
1 |
1 |
TF |
MetR |
Homocysteine |
Methionine biosynthesis |
1 |
1 |
TF |
ModE |
Molybdate |
Molybdenum homeostasis |
2 |
2 |
TF |
ModE2 |
Molybdate |
Molybdopterin biosynthesis |
2 |
2 |
TF |
NadQ |
|
NAD biosynthesis |
2 |
3 |
TF |
NikR |
Nickel ion, (Ni2+) |
Nickel homeostasis |
1 |
1 |
TF |
NorR |
Nitric oxide |
Nitrosative stress response |
2 |
4 |
TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
2 |
TF |
NrtR |
Adenosine diphosphate ribose |
NAD biosynthesis |
3 |
4 |
TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
4 |
7 |
TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
4 |
4 |
TF |
PdxQ |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
TF |
PdxQ2 |
|
Metabolite transport; Pyridoxine/pyridoxal homeostasis |
3 |
2 |
TF |
PdxQ3 |
|
Metabolite transport; Pyridoxine/pyridoxal homeostasis |
2 |
1 |
TF |
PdxR |
|
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
TF |
PdxW |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
1 |
1 |
TF |
SdhR |
|
Tricarboxylic acid cycle |
4 |
4 |
TF |
SoxR |
Paraquat |
Superoxide stress response |
4 |
3 |
TF |
TalR |
L-talarate |
L-talarate utilization |
2 |
4 |
TF |
TauR |
Taurine |
Taurine utilization |
3 |
3 |
TF |
UreR |
|
|
3 |
5 |
TF |
VanR |
Vanillate |
Vanillate utilization |
2 |
3 |
TF |
YdcR |
|
|
2 |
1 |
TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
1 |
1 |
RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
2 |
2 |
RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
4 |
3 |
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