Regulons of Alteromonas macleodii 'Deep ecotype'

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	ArgR	Arginine	Arginine biosynthesis; Arginine degradation	5	5
TF	BglR	Beta-glucoside	Beta-glucosides utilization	4	4
TF	BirA	Biotin	Biotin biosynthesis	2	2
TF	FabR	Unsaturated acyl-ACP; Unsaturated acyl-CoA	Fatty acid biosynthesis	8	5
TF	FadR	Palmitoyl-CoA; Oleoyl-CoA	Fatty acid degradation	8	6
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	15	11
TF	GalR	Galactose	Galactose utilization	5	4
TF	HexR	2-keto-3-deoxy-6-phosphogluconate	Central carbohydrate metabolism	15	12
TF	HutC	cis-Urocanic acid	Histidine utilization	4	4
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	5	4
TF	LexA	DNA damage	SOS response	12	13
TF	LiuR		Branched-chain amino acid degradation	12	9
TF	MalR	Maltose	Maltose utilization; Maltodextrin utilization	6	6
TF	MerR	Mercury ion, (Hg2+)	Mercury resistance	5	4
TF	MetJ	S-adenosylmethionine	Methionine metabolism; Methionine biosynthesis	9	10
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	3	3
TF	PdhR	Pyruvate	Pyruvate metabolism	3	1
TF	PrpR	2-methylcitrate	Methylcitrate utilization	5	2
TF	PsrA	Oleate	Fatty acid degradation	13	3
TF	RutR	Uracil	Pyrimidine utilization	8	6
TF	RutR2	Uracil	Pyrimidine utilization	2	2
TF	ScrR	Sucrose	Sucrose utilization	6	5
TF	Sde_0506		Sugar utilization	2	2
TF	TyrR1	Tyrosine; Phenylalanine	Aromatic amino acid metabolism	5	3
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	5	6
RNA	MOCO_RNA_motif	Molybdenum	Molybdenum homeostasis; Molybdopterin biosynthesis	3	1
RNA	TPP			2	2

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --