Regulon of LexA in Alteromonas macleodii 'Deep ecotype'
| Regulator type: | Transcription factor |
| TF locus tag: | MADE_04014 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -65
Score: 6.1 Sequence: TACTGTTTATTTATACAGTT
Locus tag: MADE_03780
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: 7
Score: 4.7 Sequence: TACTGGGTATAGATCCAGGT
Locus tag: MADE_01729
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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Position: -60
Score: 5.7 Sequence: TACTGTATATATTATCAGTT
Position: -41
Score: 4.5 Sequence: TACTGTATATATCATCATGT
Locus tag: MADE_02270
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -76
Score: 5.3 Sequence: TACTGTCTTTTTGTACAGTT
Locus tag: MADE_00753
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -81
Score: 4.8 Sequence: TACTGTATACACATACACAC
Position: -64
Score: 4.9 Sequence: CACTGTATAAGAAGCCAGTA
Locus tag: MADE_01066
Name: Patl_2012 Funciton: hypothetical protein |
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Patl_2012
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hypothetical protein
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Position: -48
Score: 5.3 Sequence: GGCTGTATAAATATACACTA
Locus tag: MADE_03930
Name: dnaQ Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7) |
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dnaQ
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DNA polymerase III epsilon subunit (EC 2.7.7.7)
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Position: -79
Score: 5.4 Sequence: GACTGTATAAATTAACAGGC
Locus tag: MADE_00200
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -33
Score: 6.2 Sequence: TACTGTATAAAAATACAGTT
Locus tag: MADE_00040
Name: imuA Funciton: Predicted RecA/RadA recombinase |
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imuA
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Predicted RecA/RadA recombinase
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Position: -44
Score: 4.8 Sequence: AGGTGTATATACTTACAGGA
Position: -25
Score: 5 Sequence: AACTGTATGAACAGACAGGT
Locus tag: MADE_04014
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -107
Score: 5.4 Sequence: AACTGTATGCTTGTACAGTA
Locus tag: MADE_03079
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |