# TF - ArgR: MADE_00735
>MADE_00735(argR) Score=4.6 Pos=-109 [Alteromonas macleodii 'Deep ecotype']
CATGAATGATTATGCAAA
>MADE_00499(astC) Score=4.2 Pos=-238 [Alteromonas macleodii 'Deep ecotype']
AGTTAATAGTTATTCACT
>MADE_00532(argC) Score=4.4 Pos=-343 [Alteromonas macleodii 'Deep ecotype']
ATAAAATATTTATACATT
>MADE_00532(argC) Score=5.1 Pos=-322 [Alteromonas macleodii 'Deep ecotype']
ATTGCATAAACATTCAAA
>MADE_01631(gltB) Score=4.6 Pos=-269 [Alteromonas macleodii 'Deep ecotype']
AATGCATAAAAATGCGGA
# TF - FabR: MADE_03580
>MADE_01586(plsC) Score=5.3 Pos=-121 [Alteromonas macleodii 'Deep ecotype']
ATCGGACAAGTGTACGCT
>MADE_02772(desC) Score=5.8 Pos=-179 [Alteromonas macleodii 'Deep ecotype']
AGCTTACACTTGTGCGCT
>MADE_02772(desC) Score=6.3 Pos=-156 [Alteromonas macleodii 'Deep ecotype']
AGCGTACAACTGTACGCT
>MADE_03581(OLE1) Score=5.7 Pos=-30 [Alteromonas macleodii 'Deep ecotype']
AGCGAACAGATGTAAGCC
>MADE_03143(hyIII) Score=5.7 Pos=-126 [Alteromonas macleodii 'Deep ecotype']
AGCGAACAAGTGTGCGCT
# TF - HexR: MADE_01243
>MADE_01243(hexR) Score=5.5 Pos=-193 [Alteromonas macleodii 'Deep ecotype']
ATGTAGTAAAATTACAA
>MADE_01243(hexR) Score=4.6 Pos=-98 [Alteromonas macleodii 'Deep ecotype']
TTGTCAAAAAATTACAT
>MADE_01244(zwf) Score=4.6 Pos=-203 [Alteromonas macleodii 'Deep ecotype']
ATGTAATTTTTTGACAA
>MADE_01244(zwf) Score=5.5 Pos=-108 [Alteromonas macleodii 'Deep ecotype']
TTGTAATTTTACTACAT
>MADE_02552(glgP) Score=5.5 Pos=-24 [Alteromonas macleodii 'Deep ecotype']
CTGTAATTAAATTACGT
>MADE_02382(ppsA) Score=5.3 Pos=-254 [Alteromonas macleodii 'Deep ecotype']
GTGTAATTTTATTACAA
>MADE_01242(pykA) Score=5.4 Pos=-98 [Alteromonas macleodii 'Deep ecotype']
CTGTAATAAAATTACGT
>MADE_00742(ppc) Score=5.2 Pos=-224 [Alteromonas macleodii 'Deep ecotype']
CTGAAATTAAATTACAA
>MADE_01954(bkdA1) Score=5.8 Pos=-276 [Alteromonas macleodii 'Deep ecotype']
TTGTAATTTAATTACAT
>MADE_02480(cpsA) Score=5.5 Pos=-254 [Alteromonas macleodii 'Deep ecotype']
CTGTAATAAAATTACAA
>MADE_03951(pckA) Score=5.3 Pos=-152 [Alteromonas macleodii 'Deep ecotype']
TTGTAATTAATTTACAA
>MADE_01250(gapA) Score=4.7 Pos=-42 [Alteromonas macleodii 'Deep ecotype']
ACGTAATTTATTTTCAT
# TF - BirA: MADE_03573
>MADE_02211(bioB) Score=6.9 Pos=-86 [Alteromonas macleodii 'Deep ecotype']
TgGTAAAgg---------------aGTTgACAA
>MADE_02212(bioA) Score=6.9 Pos=-18 [Alteromonas macleodii 'Deep ecotype']
TTGTcAACt---------------ccTTTACcA
# TF - NrdR: MADE_02986
>MADE_02125(nrdA) Score=5.1 Pos=-313 [Alteromonas macleodii 'Deep ecotype']
CCTCACTATCTTGTGT
>MADE_02125(nrdA) Score=4.9 Pos=-345 [Alteromonas macleodii 'Deep ecotype']
CCACCAGATATTGGGT
>MADE_03883(nrdG) Score=4.8 Pos=-62 [Alteromonas macleodii 'Deep ecotype']
ACACAACATATAGTTA
>MADE_03883(nrdG) Score=5 Pos=-94 [Alteromonas macleodii 'Deep ecotype']
ATACAACATATAGTGT
# TF - Zur
>MADE_01807(COG4525) Score=5.2 Pos=-50 [Alteromonas macleodii 'Deep ecotype']
GTAATAATATAACATTACAACAC
>MADE_01807(COG4525) Score=6.1 Pos=-55 [Alteromonas macleodii 'Deep ecotype']
TTATGGTAATAATATAACATTAC
>MADE_01528(omr2) Score=5.8 Pos=-25 [Alteromonas macleodii 'Deep ecotype']
AAAATGAGATAACATAACATCAC
>MADE_00705(PF05787) Score=5.5 Pos=-87 [Alteromonas macleodii 'Deep ecotype']
ATGTTGTTATAGTGTAACAATAT
>MADE_00546(PF03203) Score=5.4 Pos=-163 [Alteromonas macleodii 'Deep ecotype']
AGTCTGTTATAATATAACGTCTC
>MADE_03676(omr) Score=5.4 Pos=-52 [Alteromonas macleodii 'Deep ecotype']
AAAATGTTATAACATCACTAAAT
# TF - PdhR: MADE_03226
>MADE_03226(pdhR) Score=5.7 Pos=-104 [Alteromonas macleodii 'Deep ecotype']
AATGGTATTACCAAT
# TF - FadR: MADE_01148
>MADE_02424(tesB) Score=3.7 Pos=-24 [Alteromonas macleodii 'Deep ecotype']
AACTCATCAGACCAGAC
>MADE_03736(fadB) Score=3.8 Pos=-174 [Alteromonas macleodii 'Deep ecotype']
AAGTCATCGGACCACTA
>MADE_02152(fadE) Score=4.5 Pos=-97 [Alteromonas macleodii 'Deep ecotype']
TGCTGGTCTGACCTCGA
>MADE_02701(fadI) Score=5.6 Pos=-65 [Alteromonas macleodii 'Deep ecotype']
TACAGGTCAGACCACTT
>MADE_01137(fadD) Score=4.2 Pos=-79 [Alteromonas macleodii 'Deep ecotype']
AAGTTATCAGACCAGTT
>MADE_02616(fadE2) Score=4.8 Pos=-28 [Alteromonas macleodii 'Deep ecotype']
AACTGGTCAGATGAGCG
# TF - PrpR: MADE_03369
>MADE_03369(prpR) Score=5.4 Pos=-87 [Alteromonas macleodii 'Deep ecotype']
GTTGTCGACAAT
>MADE_03369(prpR) Score=5.3 Pos=-34 [Alteromonas macleodii 'Deep ecotype']
ATTGTCGACATT
# TF - IscR: MADE_01355
>MADE_01355(iscR) Score=6.1 Pos=-88 [Alteromonas macleodii 'Deep ecotype']
ATACTTGACTAATTTACTGGGTTTT
>MADE_01355(iscR) Score=6.9 Pos=-63 [Alteromonas macleodii 'Deep ecotype']
ATACTTGACCATTTTAGTCAGGTAT
>MADE_01357(sufB) Score=6.6 Pos=-227 [Alteromonas macleodii 'Deep ecotype']
ATATTTGAGTGAAATAGTCGGGTAT
>MADE_03996(nfuA) Score=6.5 Pos=-69 [Alteromonas macleodii 'Deep ecotype']
ATACCTGACTGTTTTAGTCAGGTAA
# TF - NtrC: MADE_01588
>MADE_00479(glnK) Score=5.3 Pos=-162 [Alteromonas macleodii 'Deep ecotype']
TGCACCATTGTTGTGCA
>MADE_01591(glnA) Score=5.5 Pos=-162 [Alteromonas macleodii 'Deep ecotype']
TGCACATTTTTGGTGCA
>MADE_01589(ntrB) Score=5.6 Pos=-33 [Alteromonas macleodii 'Deep ecotype']
TGCACAATAATGGTGCA
# TF - Fur: MADE_01084
>MADE_00161 Score=5.7 Pos=5 [Alteromonas macleodii 'Deep ecotype']
TAATGATAATAAGTATCATTT
>MADE_02744(bfd) Score=5.1 Pos=-57 [Alteromonas macleodii 'Deep ecotype']
GAATAGCAATTATTATCATTT
>MADE_00133(fhuE) Score=5.5 Pos=-102 [Alteromonas macleodii 'Deep ecotype']
AAATAGCAATAATTATCATTT
>MADE_03816(Patl_0871) Score=5.1 Pos=-53 [Alteromonas macleodii 'Deep ecotype']
TAATGAGAATCATTAACAAAT
>MADE_02492(Patl_1817) Score=4.8 Pos=-72 [Alteromonas macleodii 'Deep ecotype']
AAGTATAAATTATTTTTATTT
>MADE_02392(COG3205) Score=6.1 Pos=-65 [Alteromonas macleodii 'Deep ecotype']
AATTGATAATAATTCTCATTA
>MADE_01602 Score=6 Pos=-8 [Alteromonas macleodii 'Deep ecotype']
AAATGCTAATGGTTATCATTT
>MADE_01534(COG4771) Score=4.8 Pos=-33 [Alteromonas macleodii 'Deep ecotype']
AAATCATTATCATTTGCATTA
>MADE_01534(COG4771) Score=5.6 Pos=-39 [Alteromonas macleodii 'Deep ecotype']
AAACGCAAATCATTATCATTT
>MADE_02743(ahpCB) Score=5.1 Pos=-251 [Alteromonas macleodii 'Deep ecotype']
AAATGATAATAATTGCTATTC
>MADE_02662 Score=5.5 Pos=-117 [Alteromonas macleodii 'Deep ecotype']
AAATAACAACTATTATTATTT
# TF - TyrR1: MADE_02829
>MADE_02829(tyrR1) Score=5.4 Pos=-37 [Alteromonas macleodii 'Deep ecotype']
CTGTACATATATGTTTACAA
>MADE_02830(phhA) Score=5.2 Pos=-102 [Alteromonas macleodii 'Deep ecotype']
ATGTAAAATTTATGTTACAG
>MADE_01711(aroF) Score=5.1 Pos=-92 [Alteromonas macleodii 'Deep ecotype']
TTGTACAACAAAGTTTACAT
# TF - LexA: MADE_04014
>MADE_01729(ruvC) Score=4.7 Pos=7 [Alteromonas macleodii 'Deep ecotype']
TACTGGGTATAGATCCAGGT
>MADE_00200(uvrD) Score=5.4 Pos=-79 [Alteromonas macleodii 'Deep ecotype']
GACTGTATAAATTAACAGGC
>MADE_00753(dinB) Score=5.3 Pos=-76 [Alteromonas macleodii 'Deep ecotype']
TACTGTCTTTTTGTACAGTT
>MADE_04014(lexA) Score=4.8 Pos=-44 [Alteromonas macleodii 'Deep ecotype']
AGGTGTATATACTTACAGGA
>MADE_04014(lexA) Score=5 Pos=-25 [Alteromonas macleodii 'Deep ecotype']
AACTGTATGAACAGACAGGT
>MADE_03079(recA) Score=5.4 Pos=-107 [Alteromonas macleodii 'Deep ecotype']
AACTGTATGCTTGTACAGTA
>MADE_03780(yebG) Score=6.1 Pos=-65 [Alteromonas macleodii 'Deep ecotype']
TACTGTTTATTTATACAGTT
>MADE_02270(recN) Score=4.5 Pos=-41 [Alteromonas macleodii 'Deep ecotype']
TACTGTATATATCATCATGT
>MADE_01066(Patl_2012) Score=4.9 Pos=-64 [Alteromonas macleodii 'Deep ecotype']
CACTGTATAAGAAGCCAGTA
>MADE_01066(Patl_2012) Score=4.8 Pos=-81 [Alteromonas macleodii 'Deep ecotype']
TACTGTATACACATACACAC
>MADE_03930(dnaQ) Score=5.3 Pos=-48 [Alteromonas macleodii 'Deep ecotype']
GGCTGTATAAATATACACTA
>MADE_00040(imuA) Score=6.2 Pos=-33 [Alteromonas macleodii 'Deep ecotype']
TACTGTATAAAAATACAGTT
>MADE_02270(recN) Score=5.7 Pos=-60 [Alteromonas macleodii 'Deep ecotype']
TACTGTATATATTATCAGTT
# TF - LiuR: MADE_02411
>MADE_02411(liuR) Score=5.5 Pos=-142 [Alteromonas macleodii 'Deep ecotype']
ATTAACGTTAACGTAAAC
>MADE_02411(liuR) Score=5.9 Pos=-164 [Alteromonas macleodii 'Deep ecotype']
CTTTACCTTAACGTAAAA
>MADE_00995(etfD) Score=5.7 Pos=-138 [Alteromonas macleodii 'Deep ecotype']
GTTGACGTAAACGTCAAC
>MADE_00995(etfD) Score=6.2 Pos=-176 [Alteromonas macleodii 'Deep ecotype']
GTTGACGTTAACGTAAAC
>MADE_01905(ivdC) Score=5.9 Pos=-32 [Alteromonas macleodii 'Deep ecotype']
CTTTACGTTTACGTAAGG
>MADE_02410(ivdA) Score=5.7 Pos=-76 [Alteromonas macleodii 'Deep ecotype']
TTTTACGTTAAGGTAAAG
>MADE_02410(ivdA) Score=5.6 Pos=-98 [Alteromonas macleodii 'Deep ecotype']
GTTTACGTTAACGTTAAT
>MADE_00996(etfB) Score=6.2 Pos=-228 [Alteromonas macleodii 'Deep ecotype']
GTTTACGTTAACGTCAAC
>MADE_00996(etfB) Score=5.9 Pos=-266 [Alteromonas macleodii 'Deep ecotype']
GTTGACGTTTACGTCAAC
# TF - PsrA: MADE_01897
>MADE_03736(fadB) Score=5.6 Pos=-147 [Alteromonas macleodii 'Deep ecotype']
ATTGAAACGCTTGTTTGATT
>MADE_01742 Score=5.9 Pos=-32 [Alteromonas macleodii 'Deep ecotype']
ATTAAAACACTTGTTTGAAA
>MADE_01022(fadD2) Score=5.6 Pos=-110 [Alteromonas macleodii 'Deep ecotype']
ATGTAAACGCTTGTTTAAAA
# TF - RutR: MADE_02513
>MADE_02502(omp2) Score=5.2 Pos=-124 [Alteromonas macleodii 'Deep ecotype']
AGTTGACCAACTGGTTAAGT
>MADE_00730(udk) Score=4.9 Pos=-183 [Alteromonas macleodii 'Deep ecotype']
AACTGACCACTTGGAGAACT
>MADE_02501(pbuT2) Score=5.5 Pos=-353 [Alteromonas macleodii 'Deep ecotype']
AACAGACCAGTTGGTCAACA
>MADE_00733(omp1) Score=5.7 Pos=-207 [Alteromonas macleodii 'Deep ecotype']
ACTTGACCATGTGGTCAGGT
>MADE_02510(pbuT) Score=5.7 Pos=-71 [Alteromonas macleodii 'Deep ecotype']
AGTTGACTAATTGGTCAGTT
>MADE_02515(xdhA) Score=5.8 Pos=-83 [Alteromonas macleodii 'Deep ecotype']
AATTGACCATTTGGTCTACT
# TF - RutR2: MADE_00759
>MADE_00759(rutR2) Score=5.4 Pos=-139 [Alteromonas macleodii 'Deep ecotype']
AATGGACCTTTTGGTTCAAT
>MADE_00760(rutA) Score=5.4 Pos=-182 [Alteromonas macleodii 'Deep ecotype']
ATTGAACCAAAAGGTCCATT
# RNA - TPP
>MADE_00146(thiC) Score=77.2 Pos=-361 [Alteromonas macleodii 'Deep ecotype']
AAATTACTTGTCGGAGTGCTTCACTGGTAACCCAGTAAGCTGAGACCGCGAAAGTGGGATCCGTAGAACCTGATCAGGCTAATACCTGCGAAGGGAACAAGAAAATACAATGT
>MADE_02805(omp_thi) Score=73.8 Pos=-160 [Alteromonas macleodii 'Deep ecotype']
ACGCTATACCAAGGGGTGTCCGTTTTCGGTCTGAGATCCACTTTAGTGGGAACCCTTAAACCTGATCCGGATAATACCGGCGTAGGAATGGTTCACAACATAGCC
# TF - MerR: MADE_02950, MADE_01412, MADE_02955, MADE_02041
>MADE_02949(merA) Score=6.1 Pos=-10 [Alteromonas macleodii 'Deep ecotype']
ACTCCGTACAATGGTACGGCGT
>MADE_02959(merT3) Score=5.3 Pos=-149 [Alteromonas macleodii 'Deep ecotype']
ACTCGGTACCACGGTACTGAGT
>MADE_02957(merT4) Score=5.2 Pos=-61 [Alteromonas macleodii 'Deep ecotype']
ACAGCGTACATTAGTACGGCAT
>MADE_01411(merT2) Score=5 Pos=-83 [Alteromonas macleodii 'Deep ecotype']
ACTCCGTACTTAGGTACATGCA
# TF - GalR: MADE_00229
>MADE_00229(galR) Score=5.3 Pos=-169 [Alteromonas macleodii 'Deep ecotype']
GAGGTTATACGTTTTCCGTT
>MADE_00231(galT) Score=6.4 Pos=-136 [Alteromonas macleodii 'Deep ecotype']
TAGGGTAAACGTTTAACCCT
>MADE_00241(omp_Gal) Score=6.1 Pos=-140 [Alteromonas macleodii 'Deep ecotype']
TATGGTAAACGTTTACCCAA
>MADE_00230(galM) Score=5.3 Pos=-123 [Alteromonas macleodii 'Deep ecotype']
AACGGAAAACGTATAACCTC
# TF - MalR: MADE_01891
>MADE_01251(malQ) Score=5.2 Pos=-124 [Alteromonas macleodii 'Deep ecotype']
TATTGCAATCGTATTCAGAT
>MADE_01881(omp(Mal)2) Score=5.7 Pos=-130 [Alteromonas macleodii 'Deep ecotype']
AAATGAATACGTATGCACAG
>MADE_01887(amyA) Score=6 Pos=-130 [Alteromonas macleodii 'Deep ecotype']
TTTTGAATACGTATGCATGT
>MADE_03950(aglA) Score=4.9 Pos=-120 [Alteromonas macleodii 'Deep ecotype']
CAATGAATACGTATGTTTAT
>MADE_01888(susA) Score=5.5 Pos=-97 [Alteromonas macleodii 'Deep ecotype']
CGGTGAATACGTATGCAGAG
>MADE_01879(omp(Mal)) Score=6.1 Pos=-134 [Alteromonas macleodii 'Deep ecotype']
TATTGAATACGTATGCAGGC
# TF - BglR: MADE_03798, MADE_04075
>MADE_03795(glcP) Score=6.1 Pos=-64 [Alteromonas macleodii 'Deep ecotype']
AGATGTAAGCGCTTTCAAAT
>MADE_03795(glcP) Score=6.6 Pos=-96 [Alteromonas macleodii 'Deep ecotype']
TTATGTAAGCGCTTACAAAA
>MADE_03797(bglA1) Score=6.6 Pos=-130 [Alteromonas macleodii 'Deep ecotype']
TTTTGTAAGCGCTTACATAA
>MADE_03797(bglA1) Score=6.3 Pos=-162 [Alteromonas macleodii 'Deep ecotype']
ATTTGAAAGCGCTTACATCT
# TF - ScrR: MADE_02629
>MADE_02629(scrR) Score=5.8 Pos=-108 [Alteromonas macleodii 'Deep ecotype']
TAAGTTAAACGTTTAAGATA
>MADE_00677(scrT) Score=6.7 Pos=-211 [Alteromonas macleodii 'Deep ecotype']
TATCTTAATCGTTTAAGATT
>MADE_00676(ams) Score=6.7 Pos=-108 [Alteromonas macleodii 'Deep ecotype']
AATCTTAAACGATTAAGATA
>MADE_01971(scrP) Score=6.6 Pos=-202 [Alteromonas macleodii 'Deep ecotype']
TATCTTAATCGATTAAGAGT
>MADE_02625(omp(Scr)) Score=6.5 Pos=-101 [Alteromonas macleodii 'Deep ecotype']
ATTCTTAATCGATTAAGTAT
# TF - HutC: MADE_03128
>MADE_03128(hutC) Score=4.9 Pos=-89 [Alteromonas macleodii 'Deep ecotype']
GTACTTGTGCATACTTGTAT
>MADE_03128(hutC) Score=6.7 Pos=-79 [Alteromonas macleodii 'Deep ecotype']
ATACTTGTATATACAAGTAT
>MADE_03129(hutI) Score=6.7 Pos=-101 [Alteromonas macleodii 'Deep ecotype']
ATACTTGTATATACAAGTAT
>MADE_03129(hutI) Score=4.9 Pos=-91 [Alteromonas macleodii 'Deep ecotype']
ATACAAGTATGCACAAGTAC
# TF - Sde_0506: MADE_00429
>MADE_00429(Sde_0506) Score=6.4 Pos=-122 [Alteromonas macleodii 'Deep ecotype']
AAATGAAAACGGTTACATAT
>MADE_00430(COG0673) Score=6.9 Pos=-89 [Alteromonas macleodii 'Deep ecotype']
AAATGTAACGGGTTACATTT
# RNA - MOCO_RNA_motif
>MADE_03862(moaA) Score=76.3 Pos=-274 [Alteromonas macleodii 'Deep ecotype']
AAGGTAACAAAAACTCCGAGCTCTAATACCTAAAGTTCGAACAACTATGGTACTGGAGCCGCAACTGAGAAGTTGCCCGGTAGCCAGAGAAATCAACCTGCCGCCCACGAGCTTTAACGCTCGATATTTGGAAAGGTGTTAGATGAACTTACAA
# TF - MetJ: MADE_03523
>MADE_02861(metA) Score=6.6 Pos=-81 [Alteromonas macleodii 'Deep ecotype']
AGACGTCTAGACGTAA
>MADE_03523(metJ) Score=7.8 Pos=-132 [Alteromonas macleodii 'Deep ecotype']
AGACGTTTAGACGTCT
>MADE_03161(metK) Score=7.4 Pos=-95 [Alteromonas macleodii 'Deep ecotype']
AGACTTTTAGACGTCT
>MADE_03524(metF) Score=8.1 Pos=-45 [Alteromonas macleodii 'Deep ecotype']
AGACGTCTAAACGTCT
>MADE_03524(metF) Score=6.3 Pos=-73 [Alteromonas macleodii 'Deep ecotype']
TGACGTCTAGACATAT
>MADE_03328(thrA) Score=6.3 Pos=-242 [Alteromonas macleodii 'Deep ecotype']
AGACGTCTATACGGCA
>MADE_03328(thrA) Score=6.1 Pos=-250 [Alteromonas macleodii 'Deep ecotype']
TGACTTATAGACGTCT
>MADE_03208(serA) Score=8 Pos=-93 [Alteromonas macleodii 'Deep ecotype']
AGACGTCTAGATGTCT
>MADE_02861(metA) Score=7.2 Pos=-89 [Alteromonas macleodii 'Deep ecotype']
AAACGTTTAGACGTCT
>MADE_03523(metJ) Score=6 Pos=-96 [Alteromonas macleodii 'Deep ecotype']
AGACGTCAAGAGGTTT