Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Macrococcus caseolyticus JCSC5402

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 3 4
TF ArsR Arsenate; Arsenite Arsenic resistance 1 2
TF BirA Biotin Biotin biosynthesis 4 2
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-diphosphate Carbon catabolism 42 25
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Branched-chain amino acids Amino acid metabolism 45 35
TF CtsR Heat shock Heat shock response 6 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 7 6
TF FapR Malonyl-CoA; Malonyl-ACP Fatty acid biosynthesis 6 5
TF FruR Fructose-6-phosphate Fructose utilization 1 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 10 7
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 1 1
TF GntR Gluconate Gluconate utilization 1 1
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 2 2
TF HssR HssS, sensor histidine kinase (heme) Heme efflux 1 1
TF HutR Histidine Histidine utilization 2 2
TF LexA DNA damage SOS response 10 8
TF MalR Maltose Maltose utilization; Maltodextrin utilization 1 1
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NreC NreB, sensor histidine kinase (Nitrate, Nitrite) Nitrate and nitrite respiration 3 2
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response 9 10
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 4 4
TF RbsR2 Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 9 5
TF ScrR Sucrose-6-phosphate Sucrose utilization 1 1
TF TreR Trehalose-6-phosphate Trehalose utilization 2 1
TF YtrA2 Multidrug resistance; Multidrug efflux; Antibiotic resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 3
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 1 1
RNA PyrR PyrR Pyrimidine metabolism 2 2
RNA SAM S-adenosylmethionine Methionine biosynthesis 9 8
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 1 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 2
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 1 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 6 6
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA yybP-ykoY 2 1
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