Regulon of CodY in Macrococcus caseolyticus JCSC5402

Properties
Regulator type:	Transcription factor
TF locus tag:	MCCL_0839
Regulator family:	CodY
Regulation mode:	repressor
Biological process:	Amino acid metabolism
Effector:	Branched-chain amino acids
Regulog:	CodY - Staphylococcaceae
Statistics of regulated genes:
- Genes	46
- Operons	22
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 516 sites [see more]

Member of regulog collections

By taxonomy - Staphylococcaceae
By TF family - CodY
By effector - Branched-chain amino acids
By pathway - Amino acid metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -87 Score: 4.3 Sequence: AATTATTAGAACATT Locus tag: MCCL_1584 Name: artQ Funciton: Arginine ABC transport system ArtQ Locus tag: MCCL_1583 Name: artM Funciton: Arginine ABC transport system ATP-binding protein ArtM
	MCCL_1584	artQ	Arginine ABC transport system ArtQ
	MCCL_1583	artM	Arginine ABC transport system ATP-binding protein ArtM
Position: -39 Score: 4.5 Sequence: ATTTTTCAAAATATA Locus tag: MCCL_1410 Name: acuA Funciton: acetoin utilization protein AcuA homolog Locus tag: MCCL_1411 Name: null Funciton: hypothetical protein Locus tag: MCCL_1412 Name: acuC Funciton: acetoin utilization protein AcuC homolog
	MCCL_1410	acuA	acetoin utilization protein AcuA homolog
	MCCL_1411		hypothetical protein
	MCCL_1412	acuC	acetoin utilization protein AcuC homolog
Position: -48 Score: 4.5 Sequence: TATATTTTGAAAAAT Locus tag: MCCL_1409 Name: acsA Funciton: acetyl-CoA synthetase
	MCCL_1409	acsA	acetyl-CoA synthetase
Position: -101 Score: 4.7 Sequence: AATATTCAGAATTAT Locus tag: MCCL_0082 Name: acp Funciton: Sodium/proton-dependent alanine carrier protein
	MCCL_0082	acp	Sodium/proton-dependent alanine carrier protein
Position: -97 Score: 4.2 Sequence: AATTTTCTtAAtAaa Position: -88 Score: 4 Sequence: AATaaaCAGAAttTT Locus tag: MCCL_1696 Name: Sca_1748 Funciton: hypothetical protein Locus tag: MCCL_1697 Name: Sca_1747 Funciton: hypothetical protein
	MCCL_1696	Sca_1748	hypothetical protein
	MCCL_1697	Sca_1747	hypothetical protein
Position: -101 Score: 4.7 Sequence: AATATTCAGAATTAT Locus tag: MCCL_0082 Name: SA0871 Funciton: sodium-alanine symporter homolog
	MCCL_0082	SA0871	sodium-alanine symporter homolog
Position: -56 Score: 4.4 Sequence: AATTTTCTTAATTAT Locus tag: MCCL_0990 Name: rocC Funciton: amino acid permease
	MCCL_0990	rocC	amino acid permease
Position: -86 Score: 4.3 Sequence: AATGTTCTAATAATT Locus tag: MCCL_1585 Name: patA Funciton: putative aminotransferase A
	MCCL_1585	patA	putative aminotransferase A
Position: -93 Score: 4.5 Sequence: TATTATCAAAAAATT Locus tag: MCCL_1461 Name: opuCA Funciton: glycine betaine/carnitine/choline ABC transporter opuCA Locus tag: MCCL_1462 Name: opuCB Funciton: glycine betaine/carnitine/choline ABC transporter opuCB Locus tag: MCCL_1463 Name: opuCC Funciton: glycine betaine/carnitine/choline ABC transporter opuCC Locus tag: MCCL_1464 Name: opuCD Funciton: glycine betaine/carnitine/choline ABC transporter opuCD
	MCCL_1461	opuCA	glycine betaine/carnitine/choline ABC transporter opuCA
	MCCL_1462	opuCB	glycine betaine/carnitine/choline ABC transporter opuCB
	MCCL_1463	opuCC	glycine betaine/carnitine/choline ABC transporter opuCC
	MCCL_1464	opuCD	glycine betaine/carnitine/choline ABC transporter opuCD
Position: -128 Score: 4.9 Sequence: AATATTCTAAAAAAT Position: -119 Score: 4.4 Sequence: AAAAATTTAAAAATT Position: -55 Score: 4.8 Sequence: AATCTTCTGAAAATT Locus tag: MCCL_0609 Name: oppA Funciton: oligopeptide ABC transporter OppA oligopeptide-binding protein
	MCCL_0609	oppA	oligopeptide ABC transporter OppA oligopeptide-binding protein
Position: -186 Score: 4.8 Sequence: AATTTTTAAAAAAAT Position: -132 Score: 4.8 Sequence: AATCTTCTGAAAATT Locus tag: MCCL_0605 Name: oppB Funciton: oligopeptide ABC transporter permease protein OppB Locus tag: MCCL_0606 Name: oppC Funciton: oligopeptide ABC transporter permease protein OppC Locus tag: MCCL_0607 Name: oppD Funciton: oligopeptide ABC transporter ATP-binding protein OppD Locus tag: MCCL_0608 Name: oppF Funciton: oligopeptide ABC transporter ATP-binding protein OppF
	MCCL_0605	oppB	oligopeptide ABC transporter permease protein OppB
	MCCL_0606	oppC	oligopeptide ABC transporter permease protein OppC
	MCCL_0607	oppD	oligopeptide ABC transporter ATP-binding protein OppD
	MCCL_0608	oppF	oligopeptide ABC transporter ATP-binding protein OppF
Position: -222 Score: 4.8 Sequence: AATATTCTGAATACT Locus tag: MCCL_0180 Name: mtnE Funciton: transaminase MtnE involved in methionine biosynthesis via salvage pathway
	MCCL_0180	mtnE	transaminase MtnE involved in methionine biosynthesis via salvage pathway
Position: -120 Score: 4.1 Sequence: ATTAATTTAAATAAT Position: -111 Score: 4.5 Sequence: AATAATCAAACAATT Locus tag: MCCL_0071 Name: ddh2 Funciton: D-lactate dehydrogenase
	MCCL_0071	ddh2	D-lactate dehydrogenase
Position: -85 Score: 4.8 Sequence: AATTTTCTAAAAACT Locus tag: MCCL_1855 Name: ilvE Funciton: branched-chain amino acid aminotransferase
	MCCL_1855	ilvE	branched-chain amino acid aminotransferase
Position: -266 Score: 5.2 Sequence: AATTTTTAGAAAATT Position: -257 Score: 4.7 Sequence: AAAATTTTAAATATT Locus tag: MCCL_0860 Name: ilvD Funciton: dihydroxy-acid dehydratase Locus tag: MCCL_0859 Name: ilvB Funciton: acetolactate synthase large subunit Locus tag: MCCL_0858 Name: ilvC Funciton: alpha-keto-beta-hydroxylacil reductoisomerase Locus tag: MCCL_0857 Name: ilvA Funciton: thereonine dehydratase
	MCCL_0860	ilvD	dihydroxy-acid dehydratase
	MCCL_0859	ilvB	acetolactate synthase large subunit
	MCCL_0858	ilvC	alpha-keto-beta-hydroxylacil reductoisomerase
	MCCL_0857	ilvA	thereonine dehydratase
Position: -61 Score: 4.9 Sequence: AATATTCTGAAAACT Position: -29 Score: 4.1 Sequence: TAATTTTAAAAATTT Locus tag: MCCL_1483 Name: fmdA Funciton: putative formamidase
	MCCL_1483	fmdA	putative formamidase
Position: -233 Score: 5 Sequence: AATATTTTAAAAATT Position: -224 Score: 4.1 Sequence: AAAATTCAAATTATA Locus tag: MCCL_0060 Name: cysD Funciton: O-acetylhomoserine sulfhydrylase Locus tag: MCCL_0059 Name: metA Funciton: homoserine O-succinyltransferase
	MCCL_0060	cysD	O-acetylhomoserine sulfhydrylase
	MCCL_0059	metA	homoserine O-succinyltransferase
Position: -195 Score: 4.8 Sequence: ATAATTCTGAAAATT Position: -186 Score: 4.4 Sequence: AAAATTTAAATTATT Position: -86 Score: 4.7 Sequence: AAATTTCTTAAAATT Locus tag: MCCL_1546 Name: comK Funciton: competence transcription factor
	MCCL_1546	comK	competence transcription factor
Position: -103 Score: 4.2 Sequence: AATTGTATAAAAAAT Position: -63 Score: 4.3 Sequence: AAATTATTGAATATT Locus tag: MCCL_0668 Name: capA Funciton: capsular polysaccharide synthesis enzyme Cap5A Locus tag: MCCL_0669 Name: capB Funciton: capsular polysaccharide synthesis enzyme Cap5B Locus tag: MCCL_0670 Name: capD Funciton: capsular polysaccharide synthesis enzyme Cap5D Locus tag: MCCL_0671 Name: capF Funciton: capsular polysaccharide synthesis enzyme Cap5F Locus tag: MCCL_0672 Name: null Funciton: hypothetical protein Locus tag: MCCL_0673 Name: capH Funciton: capsular polysaccharide synthesis enzyme Cap5H Locus tag: MCCL_0674 Name: capN Funciton: capsular polysaccharide synthesis enzyme Cap5N Locus tag: MCCL_0675 Name: capO Funciton: capsular polysaccharide synthesis enzyme Cap8O Locus tag: MCCL_0676 Name: null Funciton: hypothetical protein Locus tag: MCCL_0677 Name: null Funciton: hypothetical protein Locus tag: MCCL_0678 Name: capM Funciton: capsular polysaccharide synthesis enzyme Cap5M
	MCCL_0668	capA	capsular polysaccharide synthesis enzyme Cap5A
	MCCL_0669	capB	capsular polysaccharide synthesis enzyme Cap5B
	MCCL_0670	capD	capsular polysaccharide synthesis enzyme Cap5D
	MCCL_0671	capF	capsular polysaccharide synthesis enzyme Cap5F
	MCCL_0672		hypothetical protein
	MCCL_0673	capH	capsular polysaccharide synthesis enzyme Cap5H
	MCCL_0674	capN	capsular polysaccharide synthesis enzyme Cap5N
	MCCL_0675	capO	capsular polysaccharide synthesis enzyme Cap8O
	MCCL_0676		hypothetical protein
	MCCL_0677		hypothetical protein
	MCCL_0678	capM	capsular polysaccharide synthesis enzyme Cap5M
Position: -86 Score: 4.5 Sequence: AATTTTTTAATTAAT Position: -77 Score: 4.8 Sequence: ATTAATCAGAAAATT Locus tag: MCCL_0050 Name: brnQ1 Funciton: branched-chain amino acid transport system
	MCCL_0050	brnQ1	branched-chain amino acid transport system
Position: -84 Score: 4.9 Sequence: AATATTCAGAAAATA Locus tag: MCCL_1059 Name: braB Funciton: branched-chain amino acid transport system
	MCCL_1059	braB	branched-chain amino acid transport system
Position: -117 Score: 4.6 Sequence: AACTTTTTGAAAATT Position: -36 Score: 5.3 Sequence: AATTTTCAGAATATT Locus tag: MCCL_0478 Name: tppB Funciton: di-tripepride ABC transporter
	MCCL_0478	tppB	di-tripepride ABC transporter

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CodY in Macrococcus caseolyticus JCSC5402

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --