Regulons of Rhodoferax ferrireducens DSM 15236

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	Aave_3515			2	2
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	1	1
TF	CueR	Copper ion, (Cu+)	Copper resistance	2	2
TF	Daci_0595		Metabolite transport	1	1
TF	FadP		Fatty acid degradation	11	6
TF	GabR	Gamma-aminobutyric acid	Gamma-aminobutyrate utilization	1	1
TF	GabR2	Gamma-aminobutyric acid	Gamma-aminobutyrate utilization	1	1
TF	GntR	Gluconate	Gluconate utilization	3	2
TF	HexR	2-keto-3-deoxy-6-phosphogluconate	Central carbohydrate metabolism	5	4
TF	HrcA	Heat shock	Heat shock response	2	2
TF	HutC	cis-Urocanic acid	Histidine utilization	1	1
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	2
TF	LexA	DNA damage	SOS response	7	7
TF	LiuR		Branched-chain amino acid degradation	6	7
TF	LiuR2		Acyclic terpenes degradation	2	2
TF	LldR	L-lactate	Lactate utilization	2	2
TF	MdcY		Malonate metabolism	2	4
TF	ModE	Molybdate	Molybdenum homeostasis	2	2
TF	ModE3	Tungsten	Tungsten homeostasis	3	2
TF	NmlR	Diamide	Carbonyl stress response	1	1
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	NsrR	Nitric oxide	Nitrosative stress response	4	3
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	5	4
TF	SdaR		Glucarate utilization; Galactarate utilization	1	1
TF	SdhR		Tricarboxylic acid cycle	3	4
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	2	4
RNA	SAH_riboswitch	S-adenosylhomocysteine	Methionine metabolism	2	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	4	4

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --