# TF - NsrR: Rfer_1883, Rfer_1866
>Rfer_1883(nsrR) Score=5.4 Pos=-70 [Rhodoferax ferrireducens DSM 15236]
AGTACATTTTATATGCATC
>Rfer_4128(PF01152) Score=4.9 Pos=-76 [Rhodoferax ferrireducens DSM 15236]
GATGCATCTTATATCTATT
>Rfer_1884(nnrS) Score=5.4 Pos=-54 [Rhodoferax ferrireducens DSM 15236]
GATGCATATAAAATGTACT
# TF - HexR: Rfer_1124
>Rfer_0205(pykA) Score=5.3 Pos=-29 [Rhodoferax ferrireducens DSM 15236]
TGGAAACTTGATTACAA
>Rfer_1125(zwf) Score=5.7 Pos=-123 [Rhodoferax ferrireducens DSM 15236]
ATGAAACTAAGTTACAT
>Rfer_1126(tal) Score=4.9 Pos=-108 [Rhodoferax ferrireducens DSM 15236]
ATGTAACTTAGTTTCAT
>Rfer_2060(edd) Score=4.9 Pos=-32 [Rhodoferax ferrireducens DSM 15236]
ATGTAATTAAGTTACCA
# TF - NrdR
>Rfer_0368(nrdD) Score=5.9 Pos=-30 [Rhodoferax ferrireducens DSM 15236]
ACACTACCTATAGTGT
>Rfer_0368(nrdD) Score=5.2 Pos=-61 [Rhodoferax ferrireducens DSM 15236]
ACGCTACATTTAGTGG
>Rfer_3347(nrdA) Score=5.3 Pos=-109 [Rhodoferax ferrireducens DSM 15236]
CCCCTATATATAGTGT
>Rfer_3347(nrdA) Score=5 Pos=-140 [Rhodoferax ferrireducens DSM 15236]
CCACTACCGGTAGTGG
# TF - Zur: Rfer_2054
>Rfer_2053(znuC) Score=6.6 Pos=-251 [Rhodoferax ferrireducens DSM 15236]
ATATCGCAATTCAGTTGCATTAT
>Rfer_2054(zur) Score=6.9 Pos=-81 [Rhodoferax ferrireducens DSM 15236]
ATAATGCAACTGAATTGCGATAT
>Rfer_2054(zur) Score=6.8 Pos=-55 [Rhodoferax ferrireducens DSM 15236]
TTAACGCAACTCAATTGCAATAA
>Rfer_2053(znuC) Score=6.4 Pos=-277 [Rhodoferax ferrireducens DSM 15236]
TTATTGCAATTGAGTTGCGTTAA
# TF - LldR: Rfer_0202
>Rfer_0201(lldE) Score=5.7 Pos=-53 [Rhodoferax ferrireducens DSM 15236]
TATTGGTATTACCAATT
>Rfer_0202(lldR) Score=6.3 Pos=-26 [Rhodoferax ferrireducens DSM 15236]
AATTGGTCTTACCAATT
# TF - HutC: Rfer_4157
>Rfer_4161(COG1414) Score=5.8 Pos=-221 [Rhodoferax ferrireducens DSM 15236]
AAAGTTGTCTATACAACTTA
# TF - IscR: Rfer_2176
>Rfer_2176(iscR) Score=5.6 Pos=-52 [Rhodoferax ferrireducens DSM 15236]
ATACTCAACTATATTAGTCAAGTAA
>Rfer_2176(iscR) Score=5.2 Pos=-82 [Rhodoferax ferrireducens DSM 15236]
TTACCCGAGTAAATTACTTGGTTTC
# TF - NtrC: Rfer_2982
>Rfer_2979(glnA) Score=5.3 Pos=-184 [Rhodoferax ferrireducens DSM 15236]
CGCACTTAATTGGTGCT
>Rfer_2979(glnA) Score=4.7 Pos=-236 [Rhodoferax ferrireducens DSM 15236]
GGCCCTGAATTGGTGCA
>Rfer_0472(glnK) Score=5 Pos=-203 [Rhodoferax ferrireducens DSM 15236]
TGCACCAAGTATGTGCG
>Rfer_2554(nrtA) Score=5.1 Pos=-315 [Rhodoferax ferrireducens DSM 15236]
TGCACAAAACTGGTGCC
# TF - ModE: Rfer_2857
>Rfer_2857(modE) Score=6.9 Pos=-74 [Rhodoferax ferrireducens DSM 15236]
CGCTATTCTAATTAGGAATAGCG
>Rfer_2858(modA) Score=6.5 Pos=-90 [Rhodoferax ferrireducens DSM 15236]
CGCTATTCCTAATTAGAATAGCG
# TF - LexA: Rfer_2994
>Rfer_2994(lexA) Score=4.6 Pos=-65 [Rhodoferax ferrireducens DSM 15236]
TACTGAATACAACAACAGTG
>Rfer_2994(lexA) Score=5.9 Pos=-84 [Rhodoferax ferrireducens DSM 15236]
AACTGATTAAAAATACAGTT
>Rfer_1225(imuA) Score=5.3 Pos=-48 [Rhodoferax ferrireducens DSM 15236]
TACTGTTGTTTTATACAGTT
>Rfer_4342(umuD) Score=5 Pos=-10 [Rhodoferax ferrireducens DSM 15236]
TACTGTATGGATGATCAGTA
>Rfer_2642(parE) Score=4.2 Pos=-38 [Rhodoferax ferrireducens DSM 15236]
AGCTGTGCTTTCATACAGCC
>Rfer_3948(recA) Score=4.3 Pos=-38 [Rhodoferax ferrireducens DSM 15236]
TACTGTTCAAGCATCCAGCC
>Rfer_0500(radA) Score=4.9 Pos=-31 [Rhodoferax ferrireducens DSM 15236]
ATCTGTTTTTCCATACAGTA
# TF - LiuR: Rfer_3843
>Rfer_3843(liuR) Score=5.3 Pos=-86 [Rhodoferax ferrireducens DSM 15236]
GTTTACGTAAACGTCAAT
>Rfer_3843(liuR) Score=6.6 Pos=-92 [Rhodoferax ferrireducens DSM 15236]
ATTGACGTTTACGTAAAC
>Rfer_3612(mcm) Score=5.1 Pos=-85 [Rhodoferax ferrireducens DSM 15236]
GTTTACGTAAACGTCAAG
>Rfer_3612(mcm) Score=6.6 Pos=-91 [Rhodoferax ferrireducens DSM 15236]
ATTGACGTTTACGTAAAC
>Rfer_1957(etfB) Score=5.5 Pos=-77 [Rhodoferax ferrireducens DSM 15236]
GTTGACGTGCACGTCAAC
>Rfer_2204(paaH) Score=5.7 Pos=-33 [Rhodoferax ferrireducens DSM 15236]
GTTTACGTTAACGTCAAT
>Rfer_2204(paaH) Score=6.5 Pos=-39 [Rhodoferax ferrireducens DSM 15236]
ATTGACGTTTACGTTAAC
# TF - LiuR2: Rfer_2820
>Rfer_2819 Score=5.6 Pos=-127 [Rhodoferax ferrireducens DSM 15236]
GGTGACGTTAACGTCAAC
>Rfer_2818(atuC) Score=5.6 Pos=-57 [Rhodoferax ferrireducens DSM 15236]
GTTGACGTTAACGTCACC
# TF - FadP: Rfer_3520
>Rfer_2386(fadB) Score=5.7 Pos=-40 [Rhodoferax ferrireducens DSM 15236]
TCGCACGATCGTTCTA
>Rfer_1957(etfB) Score=5 Pos=-163 [Rhodoferax ferrireducens DSM 15236]
AAGCACGACCGTACTA
>Rfer_3018(etfD) Score=5.5 Pos=-85 [Rhodoferax ferrireducens DSM 15236]
AAGAACGATCGTTCTA
>Rfer_3520(fadP) Score=5.6 Pos=-26 [Rhodoferax ferrireducens DSM 15236]
TAGCACGATCGTTCTT
>Rfer_3608 Score=5.5 Pos=-29 [Rhodoferax ferrireducens DSM 15236]
TAGCACGGTCGTTCTA
>Rfer_1646(acdQ) Score=5.5 Pos=-144 [Rhodoferax ferrireducens DSM 15236]
TCGCACGATCGTGCTA
# RNA - TPP
>Rfer_3246(thiB) Score=54.9 Pos=-140 [Rhodoferax ferrireducens DSM 15236]
GCGAGTTCACCGGGGGTGTCCGTTGCAAGATGGTCTGAGAAATACCCCACTCACCTGATCTGGATCATGCCAGCGTAGGGAGCGTGAAGGTTGGCCTTC
>Rfer_1708(thiC) Score=60.8 Pos=-197 [Rhodoferax ferrireducens DSM 15236]
CGCCCTGCCCGGGGTGCGCTGTGATGGCGCTGAGATGGTCGACCGAACCCGCGAACTTGATCCGGTTCATACCGGCGTAAGAAGCGCCAGACTGCATTATTCCT
>Rfer_2463(cytX) Score=54.3 Pos=-187 [Rhodoferax ferrireducens DSM 15236]
CATTTCGCTAGGGGTGTTGCCAGGCTTTTAATGAAAGCGGGTGACTGAGAAAGTCCCTTTGAACCTGACTGAGGTAATCCTCGCGCAGGGAAGCAAGTCTGAACATAGGT
>Rfer_2472(thiM) Score=60.4 Pos=-137 [Rhodoferax ferrireducens DSM 15236]
CCGTGCTTGCTAGAGGTGTCGCCTGCGGGTGACTGAGACATACTCTTTGAACCTGATCTGGGTCGTACCAGCGTAGGGAAGCTTCATTTTTTCCTT
# TF - HrcA: Rfer_1650
>Rfer_1132(groS) Score=7.2 Pos=-130 [Rhodoferax ferrireducens DSM 15236]
TTAGCACTCGTAAGAGTTGAGTGCTAA
>Rfer_1692(rpoH) Score=7.1 Pos=-58 [Rhodoferax ferrireducens DSM 15236]
TTAGCACTCTCTCTCATAGAGTGCTAA
# TF - GntR: Rfer_0957
>Rfer_0956(gntK) Score=6.1 Pos=-33 [Rhodoferax ferrireducens DSM 15236]
TTAAGATAGCGCTATCTATT
>Rfer_0957(gntR) Score=6.1 Pos=-197 [Rhodoferax ferrireducens DSM 15236]
AATAGATAGCGCTATCTTAA
# TF - NmlR: Rfer_4023
>Rfer_4023(nmlR) Score=5 Pos=-33 [Rhodoferax ferrireducens DSM 15236]
CTTCGAGTGCACTCGAAG
# TF - CadR-PbrR: Rfer_0853
>Rfer_0854(cadA) Score=5.7 Pos=-54 [Rhodoferax ferrireducens DSM 15236]
ACTCTATACCTACTATAGGGT
# RNA - SAH_riboswitch
>Rfer_0652(ahcY) Score=43.3 Pos=-187 [Rhodoferax ferrireducens DSM 15236]
TTTCCGAGGAGCGTTGCAGCTCGATATCCTGGCCAGAAACCGGCAGGGGACGCGAGTGAGGCTCGGAGCACGCGGCCCTGATGGGGCTGCGACAGTCAACGGCGCTCACCCACTGG
>Rfer_0466(metH) Score=55.6 Pos=-93 [Rhodoferax ferrireducens DSM 15236]
CTTCCAAGGAGCGTTGCAGTCGGCCACATGGCCGGTCAGGCTTGGATGACCCCAACGACGCTCACCTGATCC
# TF - Aave_3515: Rfer_0874
>Rfer_0874(Aave_3515) Score=4.9 Pos=-216 [Rhodoferax ferrireducens DSM 15236]
TATTGTTGAACAATT
>Rfer_0873(COG3819) Score=4.9 Pos=-72 [Rhodoferax ferrireducens DSM 15236]
AATTGTTCAACAATA
# TF - CueR: Rfer_0023
>Rfer_0024(copA) Score=5.8 Pos=-35 [Rhodoferax ferrireducens DSM 15236]
ACCTTGCCATGATGGGAAGGA
>Rfer_0023(cueR) Score=6 Pos=12 [Rhodoferax ferrireducens DSM 15236]
ACCTTCCCACGGTGGCAAGGT
# TF - SdaR: Rfer_1641
>Rfer_1641(sdaR) Score=4.7 Pos=-38 [Rhodoferax ferrireducens DSM 15236]
AATTTGTCATGCAGCCT
# TF - ModE3: Rfer_2870
>Rfer_3262(fdoX) Score=6.1 Pos=-41 [Rhodoferax ferrireducens DSM 15236]
CTATGCAAATAGTTGCATAA
>Rfer_2869(tupA) Score=5.2 Pos=-58 [Rhodoferax ferrireducens DSM 15236]
CTATGCACGGTGGTTCATAT
# TF - Daci_0595: Rfer_3725
>Rfer_3726(PF01810) Score=17 Pos=-114 [Rhodoferax ferrireducens DSM 15236]
AACCTGTGTTG-(10)-CAATACAGCTC-(15)-CAAGTGTACTG-(0)-CCAGTGTATTG
# TF - GabR: Rfer_0348
>Rfer_0349(puuD) Score=12.4 Pos=-84 [Rhodoferax ferrireducens DSM 15236]
AGTGGCAC-(15)-ACCGGCCC-(7)-GAACCAAT
# TF - GabR2: Rfer_0591
>Rfer_0592(gabT) Score=15.3 Pos=-126 [Rhodoferax ferrireducens DSM 15236]
GTATGTAGCGGT-(6)-GGCTGCACAGTG-(17)-ATCTGTATATGG
# TF - MdcY: Rfer_1839
>Rfer_1839(mdcY) Score=4.6 Pos=-90 [Rhodoferax ferrireducens DSM 15236]
ATGTATACAT
>Rfer_1839(mdcY) Score=3.8 Pos=-25 [Rhodoferax ferrireducens DSM 15236]
TTGCATACCA
>Rfer_1840(matP) Score=3.8 Pos=-160 [Rhodoferax ferrireducens DSM 15236]
TGGTATGCAA
>Rfer_1840(matP) Score=4.6 Pos=-95 [Rhodoferax ferrireducens DSM 15236]
ATGTATACAT
# TF - SdhR: Rfer_1802
>Rfer_1335(aceA) Score=6.7 Pos=-124 [Rhodoferax ferrireducens DSM 15236]
AAAAATGTCTTCTATAAGACATAAGA
>Rfer_1802(sdhR) Score=6.7 Pos=-23 [Rhodoferax ferrireducens DSM 15236]
TCTTATGTCTTATATAAGATAAGATG
>Rfer_1803(mdh) Score=6.7 Pos=-138 [Rhodoferax ferrireducens DSM 15236]
CATCTTATCTTATATAAGACATAAGA
>Rfer_1335(aceA) Score=5.3 Pos=-94 [Rhodoferax ferrireducens DSM 15236]
TTTTTAGTCTTATACAAGACCTAAAA