Regulon of TPP in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Comamonadaceae
Under regulation:
- Genes	12
- Operons	4

Member of regulog collections

By taxonomy - Comamonadaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -187 Score: 54.3 Sequence: CATTTCGCTAGGGGT... Locus tag: Rfer_2463 Name: cytX Funciton: Predicted hydroxymethylpyrimidine transporter CytX Locus tag: Rfer_2464 Name: thiO Funciton: Glycine oxidase ThiO (EC 1.4.3.19) Locus tag: Rfer_2465 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: Rfer_2466 Name: thiG Funciton: Thiazole biosynthesis protein ThiG Locus tag: Rfer_2467 Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Rfer_2463	cytX	Predicted hydroxymethylpyrimidine transporter CytX
	Rfer_2464	thiO	Glycine oxidase ThiO (EC 1.4.3.19)
	Rfer_2465	thiS	Sulfur carrier protein ThiS
	Rfer_2466	thiG	Thiazole biosynthesis protein ThiG
	Rfer_2467	thiE	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Position: -197 Score: 60.8 Sequence: CGCCCTGCCCGGGGT... Locus tag: Rfer_1708 Name: thiC Funciton: Thiamin biosynthesis protein ThiC
	Rfer_1708	thiC	Thiamin biosynthesis protein ThiC
Position: -140 Score: 54.9 Sequence: GCGAGTTCACCGGGG... Locus tag: Rfer_3246 Name: thiB Funciton: Thiamin ABC transporter, substrate-binding component Locus tag: Rfer_3245 Name: thiP Funciton: Thiamin ABC transporter, permease protein Locus tag: Rfer_3244 Name: thiQ Funciton: Thiamin ABC transporter, ATP-binding protein
	Rfer_3246	thiB	Thiamin ABC transporter, substrate-binding component
	Rfer_3245	thiP	Thiamin ABC transporter, permease protein
	Rfer_3244	thiQ	Thiamin ABC transporter, ATP-binding protein
Position: -137 Score: 60.4 Sequence: CCGTGCTTGCTAGAG... Locus tag: Rfer_2472 Name: thiM Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50) Locus tag: Rfer_2471 Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: Rfer_2470 Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
	Rfer_2472	thiM	Hydroxyethylthiazole kinase (EC 2.7.1.50)
	Rfer_2471	thiE	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	Rfer_2470	thiD	Phosphomethylpyrimidine kinase (EC 2.7.4.7)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD