Statistics of regulated genes

Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	11	3
Acidovorax sp. JS42	5	2
Comamonas testosteroni KF-1	8	3
Delftia acidovorans SPH-1	11	3
Polaromonas naphthalenivorans CJ2	1	1
Polaromonas sp. JS666	3	2
Rhodoferax ferrireducens DSM 15236	12	4
Variovorax paradoxus S110	2	2
Verminephrobacter eiseniae EF01-2	1	1
Methylibium petroleiphilum PM1	6	2
Leptothrix cholodnii SP-6	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes												Function
CRON 1.
PF04443	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -185 score = 50.47 sequence = CCGCAACGCTCCGGG... Gene: Aave_4517: Acyl-protein synthetase, LuxE	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -163 score = 48.67 sequence = GCGCCGCGCTCCGGG... Gene: CtesDRAFT_2085: Acyl-protein synthetase, LuxE	* Delftia acidovorans SPH-1 Site: position = -160 score = 45.65 sequence = GCCCTCCGCTCCGGG... Gene: Daci_4530: Acyl-protein synthetase, LuxE	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Acyl-protein synthetase, LuxE
PF05893	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4516: putative acyl-CoA reductase	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2084: putative acyl-CoA reductase	Delftia acidovorans SPH-1 Gene: Daci_4529: putative acyl-CoA reductase	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	putative acyl-CoA reductase
thiZ	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4515: Hydroxymethylpyrimidine ABC transporter, ATPase component	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2083: Hydroxymethylpyrimidine ABC transporter, ATPase component	Delftia acidovorans SPH-1 Gene: Daci_4528: Hydroxymethylpyrimidine ABC transporter, ATPase component	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4514: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2082: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Delftia acidovorans SPH-1 Gene: Daci_4527: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4513: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2081: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Delftia acidovorans SPH-1 Gene: Daci_4526: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Hydroxymethylpyrimidine ABC transporter, substrate-binding component
oarX	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4512: Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2080: Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX	Delftia acidovorans SPH-1 Gene: Daci_4525: Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Thiamin-related 3-oxoacyl-[acyl-carrier protein] reductase OarX
CRON 2.
thiM	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -137 score = 60.4 sequence = CCGTGCTTGCTAGAG... Gene: Rfer_2472: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_2206: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2471: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_2205: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3067: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Acidovorax sp. JS42 Gene: Ajs_1787: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0937: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Delftia acidovorans SPH-1 Gene: Daci_3294: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2435: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Polaromonas sp. JS666 Gene: Bpro_2331: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2470: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Variovorax paradoxus S110 Gene: Vapar_2399: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4315: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_2204: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
CRON 3.
omp_thi	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	* Methylibium petroleiphilum PM1 Site: position = -180 score = 50.66 sequence = CGACACCAGCTAGGG... Gene: Mpe_A1495: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Leptothrix cholodnii SP-6	Predicted thiamin-specific outer membrane transporter, TonB-dependent
CRON 4.
thiB	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -140 score = 54.92 sequence = GCGAGTTCACCGGGG... Gene: Rfer_3246: Thiamin ABC transporter, substrate-binding component	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Thiamin ABC transporter, substrate-binding component
thiP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3245: Thiamin ABC transporter, permease protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Thiamin ABC transporter, permease protein
thiQ	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3244: Thiamin ABC transporter, ATP-binding protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Thiamin ABC transporter, ATP-binding protein
CRON 5.
cytX	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -213 score = 32.17 sequence = GCAGCAATGCTGGGG... Gene: CtesDRAFT_0940: Predicted hydroxymethylpyrimidine transporter CytX	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_2434: Predicted hydroxymethylpyrimidine transporter CytX	* Polaromonas sp. JS666 Site: position = -171 score = 35.44 sequence = GTGCATCCGCTGGGA... Gene: Bpro_2332: Predicted hydroxymethylpyrimidine transporter CytX	* Rhodoferax ferrireducens DSM 15236 Site: position = -187 score = 54.35 sequence = CATTTCGCTAGGGGT... Gene: Rfer_2463: Predicted hydroxymethylpyrimidine transporter CytX	* Variovorax paradoxus S110 Site: position = -185 score = 48.93 sequence = GCACCACCGCTAGGG... Gene: Vapar_2400: Predicted hydroxymethylpyrimidine transporter CytX	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	* Leptothrix cholodnii SP-6 Site: position = -151 score = 50.75 sequence = TTCCTTGCTGGGGGT... Gene: Lcho_2203: Predicted hydroxymethylpyrimidine transporter CytX	Predicted hydroxymethylpyrimidine transporter CytX
thiO	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -170 score = 52.71 sequence = GGACGAAACAGGGGT... Gene: Aave_3068: Glycine oxidase ThiO (EC 1.4.3.19)	* Acidovorax sp. JS42 Site: position = -184 score = 53.28 sequence = ACGGACGAAACAGGG... Gene: Ajs_1786: Glycine oxidase ThiO (EC 1.4.3.19)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0936: Glycine oxidase ThiO (EC 1.4.3.19)	* Delftia acidovorans SPH-1 Site: position = -79 score = 23.39 sequence = TGCCGCGCAGCGCCC... Gene: Daci_3293: Glycine oxidase ThiO (EC 1.4.3.19)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0020: Glycine oxidase ThiO (EC 1.4.3.19)	Polaromonas sp. JS666 Gene: Bpro_0038: Glycine oxidase ThiO (EC 1.4.3.19)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2464: Glycine oxidase ThiO (EC 1.4.3.19)	Variovorax paradoxus S110 Gene: Vapar_2398: Glycine oxidase ThiO (EC 1.4.3.19)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4314: Glycine oxidase ThiO (EC 1.4.3.19)	Methylibium petroleiphilum PM1 Gene: Mpe_A1609: Glycine oxidase ThiO (EC 1.4.3.19)	Leptothrix cholodnii SP-6 Gene: Lcho_2431: Glycine oxidase ThiO (EC 1.4.3.19)	Glycine oxidase ThiO (EC 1.4.3.19)
thiS	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3069: Sulfur carrier protein ThiS	Acidovorax sp. JS42 Gene: Ajs_1785: Sulfur carrier protein ThiS	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0935: Sulfur carrier protein ThiS	Delftia acidovorans SPH-1 Gene: Daci_3292: Sulfur carrier protein ThiS	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0021: Sulfur carrier protein ThiS	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2465: Sulfur carrier protein ThiS	Variovorax paradoxus S110 Gene: Vapar_2397: Sulfur carrier protein ThiS	Verminephrobacter eiseniae EF01-2 Gene: Veis_4313: Sulfur carrier protein ThiS	Methylibium petroleiphilum PM1 Gene: Mpe_A1608: Sulfur carrier protein ThiS	Leptothrix cholodnii SP-6 Gene: Lcho_2432: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3070: Thiazole biosynthesis protein ThiG	Acidovorax sp. JS42 Gene: Ajs_1784: Thiazole biosynthesis protein ThiG	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0934: Thiazole biosynthesis protein ThiG	Delftia acidovorans SPH-1 Gene: Daci_3291: Thiazole biosynthesis protein ThiG	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0022: Thiazole biosynthesis protein ThiG	Polaromonas sp. JS666 Gene: Bpro_0040: Thiazole biosynthesis protein ThiG	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2466: Thiazole biosynthesis protein ThiG	Variovorax paradoxus S110 Gene: Vapar_2396: Thiazole biosynthesis protein ThiG	Verminephrobacter eiseniae EF01-2 Gene: Veis_4312: Thiazole biosynthesis protein ThiG	Methylibium petroleiphilum PM1 Gene: Mpe_A1607: Thiazole biosynthesis protein ThiG	Leptothrix cholodnii SP-6 Gene: Lcho_2433: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiE	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3071: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Acidovorax sp. JS42 Gene: Ajs_1783: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0933: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Delftia acidovorans SPH-1 Gene: Daci_3290: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0023: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Polaromonas sp. JS666 Gene: Bpro_0041: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2467: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Variovorax paradoxus S110 Gene: Vapar_2395: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_4311: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiC	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -292 score = 53.99 sequence = CGCCTGCTCCGGGGT... Gene: Aave_0829: Thiamin biosynthesis protein ThiC	* Acidovorax sp. JS42 Site: position = -212 score = 54.83 sequence = CGGCCCCGCTCCGGG... Gene: Ajs_3661: Thiamin biosynthesis protein ThiC	* Comamonas testosteroni KF-1 Site: position = -346 score = 57.98 sequence = ATGCAGCTCCGGGGT... Gene: CtesDRAFT_0498: Thiamin biosynthesis protein ThiC	* Delftia acidovorans SPH-1 Site: position = -390 score = 54.36 sequence = GCTCTGCTCCGGGGT... Gene: Daci_2313: Thiamin biosynthesis protein ThiC	* Polaromonas naphthalenivorans CJ2 Site: position = -204 score = 75.86 sequence = GCAGCTTGTCGGGGT... Gene: Pnap_0019: Thiamin biosynthesis protein ThiC	* Polaromonas sp. JS666 Site: position = -182 score = 75.41 sequence = AAAGCTTGTCGGGGT... Gene: Bpro_0037: Thiamin biosynthesis protein ThiC	* Rhodoferax ferrireducens DSM 15236 Site: position = -197 score = 60.84 sequence = CGCCCTGCCCGGGGT... Gene: Rfer_1708: Thiamin biosynthesis protein ThiC	* Variovorax paradoxus S110 Site: position = -196 score = 60.02 sequence = AGTCCCCGCTCCGGG... Gene: Vapar_4728: Thiamin biosynthesis protein ThiC	* Verminephrobacter eiseniae EF01-2 Site: position = -224 score = 54.33 sequence = GGCCGCTGCTCCGGG... Gene: Veis_1523: Thiamin biosynthesis protein ThiC	* Methylibium petroleiphilum PM1 Site: position = -178 score = 56.76 sequence = GAGCACTGCTCCGGG... Gene: Mpe_A1610: Thiamin biosynthesis protein ThiC	* Leptothrix cholodnii SP-6 Site: position = -214 score = 44.31 sequence = CTCCCGCTCCGGGGT... Gene: Lcho_2430: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiDE	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A1606: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Leptothrix cholodnii SP-6 Gene: Lcho_2434: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

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