Regulon of LexA in Rhodoferax ferrireducens DSM 15236
| Regulator type: | Transcription factor |
| TF locus tag: | Rfer_2994 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -84
Score: 5.9 Sequence: AACTGATTAAAAATACAGTT
Position: -65
Score: 4.6 Sequence: TACTGAATACAACAACAGTG
Locus tag: Rfer_2994
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -48
Score: 5.3 Sequence: TACTGTTGTTTTATACAGTT
Locus tag: Rfer_1225
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: Rfer_1226
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: Rfer_1227
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -38
Score: 4.2 Sequence: AGCTGTGCTTTCATACAGCC
Locus tag: Rfer_2642
Name: parE Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: Rfer_2641
Name: parC Funciton: Topoisomerase IV subunit A (EC 5.99.1.-) |
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parE
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Topoisomerase IV subunit B (EC 5.99.1.-)
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parC
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Topoisomerase IV subunit A (EC 5.99.1.-)
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Position: -10
Score: 5 Sequence: TACTGTATGGATGATCAGTA
Locus tag: Rfer_4342
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: Rfer_4341
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -38
Score: 4.3 Sequence: TACTGTTCAAGCATCCAGCC
Locus tag: Rfer_3948
Name: recA Funciton: Recombinase A
Locus tag: Rfer_3947
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -31
Score: 4.9 Sequence: ATCTGTTTTTCCATACAGTA
Locus tag: Rfer_0500
Name: radA Funciton: DNA repair protein RadA |
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radA
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DNA repair protein RadA
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |