Regulon of LiuR in Rhodoferax ferrireducens DSM 15236

Properties
Regulator type:	Transcription factor
TF locus tag:	Rfer_3843
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	11
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -92 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -86 Score: 5.3 Sequence: GTTTACGTAAACGTCAAT Locus tag: Rfer_3843 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: Rfer_3842 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Rfer_3841 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Rfer_3840 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Rfer_3839 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Rfer_3838 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Rfer_3843	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Rfer_3842	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Rfer_3841	cah	Carbonic anhydrase (EC 4.2.1.1)
	Rfer_3840	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Rfer_3839	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Rfer_3838	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -91 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -85 Score: 5.1 Sequence: GTTTACGTAAACGTCAAG Locus tag: Rfer_3612 Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
	Rfer_3612	mcm	Methylmalonyl-CoA mutase (EC 5.4.99.2)
Position: -77 Score: 5.5 Sequence: GTTGACGTGCACGTCAAC Locus tag: Rfer_1957 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Rfer_1958 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: Rfer_1959 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Rfer_1957	etfB	Electron transfer flavoprotein, beta subunit
	Rfer_1958	etfA	Electron transfer flavoprotein, alpha subunit
	Rfer_1959	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -39 Score: 6.5 Sequence: ATTGACGTTTACGTTAAC Position: -33 Score: 5.7 Sequence: GTTTACGTTAACGTCAAT Locus tag: Rfer_2204 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Rfer_2204	paaH	3-hydroxyacyl-CoA dehydrogenase

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD