Regulog LiuR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	9	3
Acidovorax sp. JS42	11	4
Comamonas testosteroni KF-1	15	5
Delftia acidovorans SPH-1	15	4
Polaromonas naphthalenivorans CJ2	12	5
Polaromonas sp. JS666	13	5
Rhodoferax ferrireducens DSM 15236	11	4
Variovorax paradoxus S110	6	1
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6	9	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
paaI	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_1073: Phenylacetic acid degradation protein paaI	* Comamonas testosteroni KF-1 Site: position = -50 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: CtesDRAFT_4405: Phenylacetic acid degradation protein paaI	* Delftia acidovorans SPH-1 Site: position = -37 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -31 score = 4.984 sequence = GTTTACGTAAACGTAATT Gene: Daci_5992: Phenylacetic acid degradation protein paaI	* Polaromonas naphthalenivorans CJ2 Site: position = -68 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Site: position = -74 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Pnap_0454: Phenylacetic acid degradation protein paaI	* Polaromonas sp. JS666 Site: position = -135 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -129 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: Bpro_4191: Phenylacetic acid degradation protein paaI	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	* Leptothrix cholodnii SP-6 Site: position = -30 score = 5.2259 sequence = GTTAACGTAAACGTCAAT Site: position = -36 score = 6.59853 sequence = ATTGACGTTAACGTAAAC Gene: Lcho_4202: Phenylacetic acid degradation protein paaI	Phenylacetic acid degradation protein paaI
liuA	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -102 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -96 score = 4.78422 sequence = GTTTACGTAAACGTAATG Gene: Aave_4371: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Acidovorax sp. JS42 Site: position = -134 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -128 score = 4.78422 sequence = GTTTACGTAAACGTAATA Gene: Ajs_3779: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4406: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Delftia acidovorans SPH-1 Gene: Daci_5991: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0455: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Polaromonas sp. JS666 Gene: Bpro_4190: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3842: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Variovorax paradoxus S110 Gene: Vapar_4724: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1333: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Methylibium petroleiphilum PM1 Gene: Mpe_A3360: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Leptothrix cholodnii SP-6 Gene: Lcho_2119: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
cah	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4370: Carbonic anhydrase (EC 4.2.1.1)	Acidovorax sp. JS42 Gene: Ajs_3778: Carbonic anhydrase (EC 4.2.1.1)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4407: Carbonic anhydrase (EC 4.2.1.1)	Delftia acidovorans SPH-1 Gene: Daci_5990: Carbonic anhydrase (EC 4.2.1.1)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0456: Carbonic anhydrase (EC 4.2.1.1)	Polaromonas sp. JS666 Gene: Bpro_4189: Carbonic anhydrase (EC 4.2.1.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3841: Carbonic anhydrase (EC 4.2.1.1)	Variovorax paradoxus S110 Gene: Vapar_4734: Carbonic anhydrase (EC 4.2.1.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1332: Carbonic anhydrase (EC 4.2.1.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A3369: Carbonic anhydrase (EC 4.2.1.1)	Leptothrix cholodnii SP-6 Gene: Lcho_4203: Carbonic anhydrase (EC 4.2.1.1)	Carbonic anhydrase (EC 4.2.1.1)
aceK	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4369: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Acidovorax sp. JS42 Gene: Ajs_3777: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4408: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Delftia acidovorans SPH-1 Gene: Daci_5989: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0457: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Polaromonas sp. JS666 Gene: Bpro_4188: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3840: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Variovorax paradoxus S110 Gene: Vapar_4733: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A3368: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Leptothrix cholodnii SP-6 Gene: Lcho_4204: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
ivdA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4368: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Acidovorax sp. JS42 Gene: Ajs_3776: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4409: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Delftia acidovorans SPH-1 Gene: Daci_5988: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0458: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Polaromonas sp. JS666 Gene: Bpro_4187: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3839: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Variovorax paradoxus S110 Gene: Vapar_4732: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1331: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Methylibium petroleiphilum PM1 Gene: Mpe_A3367: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Leptothrix cholodnii SP-6 Gene: Lcho_4205: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Daci_5987	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4411: pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Delftia acidovorans SPH-1 Gene: Daci_5987: pyridoxamine 5'-phosphate oxidase-related, FMN-binding	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Aave_4367	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4367: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Acidovorax sp. JS42 Gene: Ajs_3775: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4412: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Delftia acidovorans SPH-1 Gene: Daci_5986: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_4186: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
ivdC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4365: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Acidovorax sp. JS42 Gene: Ajs_3774: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4413: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Delftia acidovorans SPH-1 Gene: Daci_5985: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_0459: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Polaromonas sp. JS666 Gene: Bpro_4185: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3838: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Variovorax paradoxus S110 Gene: Vapar_4730: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_4207: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Daci_5984	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4419: Alpha/beta hydrolase fold (EC 3.8.1.5)	Delftia acidovorans SPH-1 Gene: Daci_5984: Alpha/beta hydrolase fold (EC 3.8.1.5)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2846: Alpha/beta hydrolase fold (EC 3.8.1.5)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Alpha/beta hydrolase fold (EC 3.8.1.5)
CtesDRAFT_4410	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4410: hypothetical protein	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	hypothetical protein
Aave_4366	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4366: acyltransferase 3	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	acyltransferase 3
Lcho_4206	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A3366: Putative amino acid efflux transporter, Rht family	Leptothrix cholodnii SP-6 Gene: Lcho_4206: Putative amino acid efflux transporter, Rht family	Putative amino acid efflux transporter, Rht family
liuR	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -70 score = 4.92901 sequence = ATTGACGTGCGCGTCAAC Gene: Aave_4372: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Acidovorax sp. JS42 Site: position = -59 score = 5.95145 sequence = ATTGACGTTCACGTCAAC Gene: Ajs_3780: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Comamonas testosteroni KF-1 Site: position = -74 score = 6.59853 sequence = ATTGACGTTAACGTAAAC Site: position = -68 score = 5.01675 sequence = GTTAACGTAAACGTCAGT Gene: CtesDRAFT_4404: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Delftia acidovorans SPH-1 Site: position = -46 score = 6.40852 sequence = ATTGACGTTAACGTCAAC Gene: Daci_5993: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Polaromonas naphthalenivorans CJ2 Site: position = -80 score = 5.12695 sequence = GTTTACGTAAACGTAAGA Site: position = -86 score = 6.31154 sequence = TTTGACGTTTACGTAAAC Gene: Pnap_0453: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Polaromonas sp. JS666 Site: position = -111 score = 6.31154 sequence = TTTGACGTTTACGTAAAC Gene: Bpro_4192: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Rhodoferax ferrireducens DSM 15236 Site: position = -86 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -92 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rfer_3843: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Variovorax paradoxus S110 Site: position = -115 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Vapar_4735: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	* Leptothrix cholodnii SP-6 Site: position = -73 score = 5.68149 sequence = ACTTACGTTTACGTCAAC Gene: Lcho_4201: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Vapar_4731	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_4731: peptidase M20	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	peptidase M20

CRON 2.
mcm	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	* Polaromonas naphthalenivorans CJ2 Site: position = -75 score = 4.78422 sequence = GTTTACGTAAACGTAATA Site: position = -81 score = 6.58437 sequence = GTTGACGTTTACGTAAAC Gene: Pnap_3524: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Polaromonas sp. JS666 Site: position = -41 score = 5.72216 sequence = GTTTACGTAAACGTCAAC Site: position = -47 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Bpro_4054: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Rhodoferax ferrireducens DSM 15236 Site: position = -85 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Site: position = -91 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rfer_3612: Methylmalonyl-CoA mutase (EC 5.4.99.2)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A0903: Methylmalonyl-CoA mutase (EC 5.4.99.2)	* Leptothrix cholodnii SP-6 Site: position = -72 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -78 score = 5.72995 sequence = TATGACGTTTACGTAAAC Gene: Lcho_3844: Methylmalonyl-CoA mutase (EC 5.4.99.2)	Methylmalonyl-CoA mutase (EC 5.4.99.2)

CRON 3.
etfB	2 Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2168: Electron transfer flavoprotein, beta subunit Gene: Aave_4307: Electron transfer flavoprotein, beta subunit	2 Acidovorax sp. JS42* Gene: Ajs_3731: Electron transfer flavoprotein, beta subunit Site: position = -45 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit	2 Comamonas testosteroni KF-1* Gene: CtesDRAFT_2699: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: CtesDRAFT_0547: Electron transfer flavoprotein, beta subunit	2 Delftia acidovorans SPH-1* Gene: Daci_1402: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -50 score = 5.15029 sequence = ATTTCGGTTTACGTAAAC Gene: Daci_2390: Electron transfer flavoprotein, beta subunit	2 Polaromonas naphthalenivorans CJ2* Gene: Pnap_2131: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Site: position = -50 score = 5.62617 sequence = GCTTACGTTTACGTCAAC Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit	* Polaromonas sp. JS666 Site: position = -40 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Site: position = -46 score = 5.62617 sequence = GCTTACGTTTACGTCAAC Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit	2 Rhodoferax ferrireducens DSM 15236* Gene: Rfer_4166: Electron transfer flavoprotein, beta subunit Site: position = -77 score = 5.46063 sequence = GTTGACGTGCACGTCAAC Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit	Variovorax paradoxus S110 Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit	2 Verminephrobacter eiseniae EF01-2 Gene: Veis_4693: Electron transfer flavoprotein, beta subunit Gene: Veis_2093: Electron transfer flavoprotein, beta subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit	4 Leptothrix cholodnii SP-6 Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit Gene: Lcho_0857: Electron transfer flavoprotein, beta subunit Gene: Lcho_1194: Electron transfer flavoprotein, beta subunit Gene: Lcho_3598: Electron transfer flavoprotein, beta subunit	Electron transfer flavoprotein, beta subunit
etfA	2 Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit Gene: Aave_4306: Electron transfer flavoprotein, alpha subunit	2 Acidovorax sp. JS42 Gene: Ajs_3730: Electron transfer flavoprotein, alpha subunit Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit	2 Comamonas testosteroni KF-1 Gene: CtesDRAFT_2698: Electron transfer flavoprotein, alpha subunit Gene: CtesDRAFT_0548: Electron transfer flavoprotein, alpha subunit	2 Delftia acidovorans SPH-1 Gene: Daci_1403: Electron transfer flavoprotein, alpha subunit Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit	2 Polaromonas naphthalenivorans CJ2 Gene: Pnap_2132: Electron transfer flavoprotein, alpha subunit Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit	Polaromonas sp. JS666 Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit	2 Rhodoferax ferrireducens DSM 15236 Gene: Rfer_4165: Electron transfer flavoprotein, alpha subunit Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit	Variovorax paradoxus S110 Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit	2 Verminephrobacter eiseniae EF01-2 Gene: Veis_4692: Electron transfer flavoprotein, alpha subunit Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit	4 Leptothrix cholodnii SP-6 Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit Gene: Lcho_0858: Electron transfer flavoprotein, alpha subunit Gene: Lcho_1195: Electron transfer flavoprotein, alpha subunit Gene: Lcho_3599: Electron transfer flavoprotein, alpha subunit	Electron transfer flavoprotein, alpha subunit
livK	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0549: Branched-chain amino acid ABC transport system, periplasmic binding component	Delftia acidovorans SPH-1 Gene: Daci_2392: Branched-chain amino acid ABC transport system, periplasmic binding component	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Branched-chain amino acid ABC transport system, periplasmic binding component
acdH	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acidovorax sp. JS42 Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3)	* Comamonas testosteroni KF-1 Site: position = -166 score = 5.14609 sequence = GTTTACGTAAACGTCAAA Site: position = -172 score = 5.06344 sequence = CATTCCGTTTACGTAAAC Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Delftia acidovorans SPH-1 Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas sp. JS666 Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3)	2 Variovorax paradoxus S110 Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3) Gene: Vapar_4282: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Methylibium petroleiphilum PM1 Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Leptothrix cholodnii SP-6 Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 4.
paaH	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -42 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Aave_2867: 3-hydroxyacyl-CoA dehydrogenase	* Acidovorax sp. JS42 Site: position = -31 score = 5.29952 sequence = GTTTACGTTAACGTAACT Site: position = -37 score = 6.062 sequence = ATTAACGTTTACGTTAAC Gene: Ajs_1606: 3-hydroxyacyl-CoA dehydrogenase	* Comamonas testosteroni KF-1 Site: position = -48 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Site: position = -42 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Gene: CtesDRAFT_5453: 3-hydroxyacyl-CoA dehydrogenase	* Delftia acidovorans SPH-1 Site: position = -42 score = 5.55256 sequence = AGTTACGTTTACGTCAAC Gene: Daci_4744: 3-hydroxyacyl-CoA dehydrogenase	* Polaromonas naphthalenivorans CJ2 Site: position = -80 score = 5.46161 sequence = GTTGACGTAAACGTCAAA Site: position = -86 score = 6.14145 sequence = ATTGACGTTGACGTAAAC Gene: Pnap_1609: 3-hydroxyacyl-CoA dehydrogenase	* Polaromonas sp. JS666 Site: position = -63 score = 5.47325 sequence = GTTTACGTCAACGTCAAC Site: position = -69 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Bpro_3093: 3-hydroxyacyl-CoA dehydrogenase	* Rhodoferax ferrireducens DSM 15236 Site: position = -33 score = 5.66139 sequence = GTTTACGTTAACGTCAAT Site: position = -39 score = 6.4975 sequence = ATTGACGTTTACGTTAAC Gene: Rfer_2204: 3-hydroxyacyl-CoA dehydrogenase	Variovorax paradoxus S110 Gene: Vapar_1765: 3-hydroxyacyl-CoA dehydrogenase	Verminephrobacter eiseniae EF01-2 Gene: Veis_2552: 3-hydroxyacyl-CoA dehydrogenase	Methylibium petroleiphilum PM1 Gene: Mpe_A2489: 3-hydroxyacyl-CoA dehydrogenase	* Leptothrix cholodnii SP-6 Site: position = -93 score = 5.47325 sequence = GTTTACGTCAACGTCAAC Site: position = -99 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Lcho_2559: 3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --