Regulog LiuR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Comamonadaceae
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 9 | 3 |
| Acidovorax sp. JS42 | 11 | 4 |
| Comamonas testosteroni KF-1 | 15 | 5 |
| Delftia acidovorans SPH-1 | 15 | 4 |
| Polaromonas naphthalenivorans CJ2 | 12 | 5 |
| Polaromonas sp. JS666 | 13 | 5 |
| Rhodoferax ferrireducens DSM 15236 | 11 | 4 |
| Variovorax paradoxus S110 | 6 | 1 |
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 | 9 | 4 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| paaI |
|
Gene: Ajs_1073: Phenylacetic acid degradation protein paaI |
*
Comamonas testosteroni KF-1 Site: position = -50 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: CtesDRAFT_4405: Phenylacetic acid degradation protein paaI |
*
Delftia acidovorans SPH-1 Site: position = -37 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -31 score = 4.984 sequence = GTTTACGTAAACGTAATT Gene: Daci_5992: Phenylacetic acid degradation protein paaI |
*
Polaromonas naphthalenivorans CJ2 Site: position = -68 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Site: position = -74 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Pnap_0454: Phenylacetic acid degradation protein paaI |
*
Polaromonas sp. JS666 Site: position = -135 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -129 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: Bpro_4191: Phenylacetic acid degradation protein paaI |
|
|
|
|
*
Leptothrix cholodnii SP-6 Site: position = -30 score = 5.2259 sequence = GTTAACGTAAACGTCAAT Site: position = -36 score = 6.59853 sequence = ATTGACGTTAACGTAAAC Gene: Lcho_4202: Phenylacetic acid degradation protein paaI |
Phenylacetic acid degradation protein paaI |
| liuA |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -102 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -96 score = 4.78422 sequence = GTTTACGTAAACGTAATG Gene: Aave_4371: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Acidovorax sp. JS42 Site: position = -134 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Site: position = -128 score = 4.78422 sequence = GTTTACGTAAACGTAATA Gene: Ajs_3779: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: CtesDRAFT_4406: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Daci_5991: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Pnap_0455: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Bpro_4190: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Rfer_3842: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Vapar_4724: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Veis_1333: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Mpe_A3360: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Lcho_2119: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| cah |
Gene: Aave_4370: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Ajs_3778: Carbonic anhydrase (EC 4.2.1.1) |
Gene: CtesDRAFT_4407: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Daci_5990: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Pnap_0456: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Bpro_4189: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Rfer_3841: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Vapar_4734: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Veis_1332: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Mpe_A3369: Carbonic anhydrase (EC 4.2.1.1) |
Gene: Lcho_4203: Carbonic anhydrase (EC 4.2.1.1) |
Carbonic anhydrase (EC 4.2.1.1) |
| aceK |
Gene: Aave_4369: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Ajs_3777: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: CtesDRAFT_4408: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Daci_5989: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Pnap_0457: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Bpro_4188: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Rfer_3840: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Vapar_4733: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
|
Gene: Mpe_A3368: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Gene: Lcho_4204: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) |
| ivdA |
Gene: Aave_4368: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Ajs_3776: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: CtesDRAFT_4409: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Daci_5988: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Pnap_0458: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Bpro_4187: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Rfer_3839: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Vapar_4732: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Veis_1331: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Mpe_A3367: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Gene: Lcho_4205: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
Acetyl-CoA C-acyltransferase (EC 2.3.1.16) |
| Daci_5987 |
|
|
Gene: CtesDRAFT_4411: pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
Gene: Daci_5987: pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
|
|
|
|
|
|
|
pyridoxamine 5'-phosphate oxidase-related, FMN-binding |
| Aave_4367 |
Gene: Aave_4367: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
Gene: Ajs_3775: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
Gene: CtesDRAFT_4412: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
Gene: Daci_5986: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|
Gene: Bpro_4186: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|
|
|
|
|
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
| ivdC |
Gene: Aave_4365: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Ajs_3774: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: CtesDRAFT_4413: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Daci_5985: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Pnap_0459: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Bpro_4185: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Rfer_3838: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Vapar_4730: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
|
Gene: Lcho_4207: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| Daci_5984 |
|
|
Gene: CtesDRAFT_4419: Alpha/beta hydrolase fold (EC 3.8.1.5) |
Gene: Daci_5984: Alpha/beta hydrolase fold (EC 3.8.1.5) |
|
|
Gene: Rfer_2846: Alpha/beta hydrolase fold (EC 3.8.1.5) |
|
|
|
|
Alpha/beta hydrolase fold (EC 3.8.1.5) |
| CtesDRAFT_4410 |
|
|
Gene: CtesDRAFT_4410: hypothetical protein |
|
|
|
|
|
|
|
|
hypothetical protein |
| Aave_4366 |
Gene: Aave_4366: acyltransferase 3 |
|
|
|
|
|
|
|
|
|
|
acyltransferase 3 |
| Lcho_4206 |
|
|
|
|
|
|
|
|
|
Gene: Mpe_A3366: Putative amino acid efflux transporter, Rht family |
Gene: Lcho_4206: Putative amino acid efflux transporter, Rht family |
Putative amino acid efflux transporter, Rht family |
| liuR |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -70 score = 4.92901 sequence = ATTGACGTGCGCGTCAAC Gene: Aave_4372: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Acidovorax sp. JS42 Site: position = -59 score = 5.95145 sequence = ATTGACGTTCACGTCAAC Gene: Ajs_3780: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Comamonas testosteroni KF-1 Site: position = -74 score = 6.59853 sequence = ATTGACGTTAACGTAAAC Site: position = -68 score = 5.01675 sequence = GTTAACGTAAACGTCAGT Gene: CtesDRAFT_4404: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Delftia acidovorans SPH-1 Site: position = -46 score = 6.40852 sequence = ATTGACGTTAACGTCAAC Gene: Daci_5993: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Polaromonas naphthalenivorans CJ2 Site: position = -80 score = 5.12695 sequence = GTTTACGTAAACGTAAGA Site: position = -86 score = 6.31154 sequence = TTTGACGTTTACGTAAAC Gene: Pnap_0453: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Polaromonas sp. JS666 Site: position = -111 score = 6.31154 sequence = TTTGACGTTTACGTAAAC Gene: Bpro_4192: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -86 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -92 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rfer_3843: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Variovorax paradoxus S110 Site: position = -115 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Vapar_4735: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
|
|
*
Leptothrix cholodnii SP-6 Site: position = -73 score = 5.68149 sequence = ACTTACGTTTACGTCAAC Gene: Lcho_4201: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| Vapar_4731 |
|
|
|
|
|
|
|
Gene: Vapar_4731: peptidase M20 |
|
|
|
peptidase M20 |
| CRON 2. | ||||||||||||
| mcm |
|
|
|
|
*
Polaromonas naphthalenivorans CJ2 Site: position = -75 score = 4.78422 sequence = GTTTACGTAAACGTAATA Site: position = -81 score = 6.58437 sequence = GTTGACGTTTACGTAAAC Gene: Pnap_3524: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
*
Polaromonas sp. JS666 Site: position = -41 score = 5.72216 sequence = GTTTACGTAAACGTCAAC Site: position = -47 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Bpro_4054: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -85 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Site: position = -91 score = 6.63969 sequence = ATTGACGTTTACGTAAAC Gene: Rfer_3612: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
|
|
Gene: Mpe_A0903: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
*
Leptothrix cholodnii SP-6 Site: position = -72 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -78 score = 5.72995 sequence = TATGACGTTTACGTAAAC Gene: Lcho_3844: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
Methylmalonyl-CoA mutase (EC 5.4.99.2) |
| CRON 3. | ||||||||||||
| etfB |
2
Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2168: Electron transfer flavoprotein, beta subunit Gene: Aave_4307: Electron transfer flavoprotein, beta subunit |
*2
Acidovorax sp. JS42 Gene: Ajs_3731: Electron transfer flavoprotein, beta subunit Site: position = -45 score = 5.14609 sequence = GTTTACGTAAACGTCAAG Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit |
*2
Comamonas testosteroni KF-1 Gene: CtesDRAFT_2699: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Gene: CtesDRAFT_0547: Electron transfer flavoprotein, beta subunit |
*2
Delftia acidovorans SPH-1 Gene: Daci_1402: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.34588 sequence = GTTTACGTAAACGTCAAT Site: position = -50 score = 5.15029 sequence = ATTTCGGTTTACGTAAAC Gene: Daci_2390: Electron transfer flavoprotein, beta subunit |
*2
Polaromonas naphthalenivorans CJ2 Gene: Pnap_2131: Electron transfer flavoprotein, beta subunit Site: position = -44 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Site: position = -50 score = 5.62617 sequence = GCTTACGTTTACGTCAAC Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit |
*
Polaromonas sp. JS666 Site: position = -40 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Site: position = -46 score = 5.62617 sequence = GCTTACGTTTACGTCAAC Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit |
*2
Rhodoferax ferrireducens DSM 15236 Gene: Rfer_4166: Electron transfer flavoprotein, beta subunit Site: position = -77 score = 5.46063 sequence = GTTGACGTGCACGTCAAC Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit |
Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit |
2
Verminephrobacter eiseniae EF01-2 Gene: Veis_4693: Electron transfer flavoprotein, beta subunit Gene: Veis_2093: Electron transfer flavoprotein, beta subunit |
Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit |
4
Leptothrix cholodnii SP-6 Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit Gene: Lcho_0857: Electron transfer flavoprotein, beta subunit Gene: Lcho_1194: Electron transfer flavoprotein, beta subunit Gene: Lcho_3598: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
2
Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit Gene: Aave_4306: Electron transfer flavoprotein, alpha subunit |
2
Acidovorax sp. JS42 Gene: Ajs_3730: Electron transfer flavoprotein, alpha subunit Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit |
2
Comamonas testosteroni KF-1 Gene: CtesDRAFT_2698: Electron transfer flavoprotein, alpha subunit Gene: CtesDRAFT_0548: Electron transfer flavoprotein, alpha subunit |
2
Delftia acidovorans SPH-1 Gene: Daci_1403: Electron transfer flavoprotein, alpha subunit Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit |
2
Polaromonas naphthalenivorans CJ2 Gene: Pnap_2132: Electron transfer flavoprotein, alpha subunit Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit |
Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit |
2
Rhodoferax ferrireducens DSM 15236 Gene: Rfer_4165: Electron transfer flavoprotein, alpha subunit Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit |
Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit |
2
Verminephrobacter eiseniae EF01-2 Gene: Veis_4692: Electron transfer flavoprotein, alpha subunit Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit |
Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit |
4
Leptothrix cholodnii SP-6 Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit Gene: Lcho_0858: Electron transfer flavoprotein, alpha subunit Gene: Lcho_1195: Electron transfer flavoprotein, alpha subunit Gene: Lcho_3599: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| livK |
|
|
Gene: CtesDRAFT_0549: Branched-chain amino acid ABC transport system, periplasmic binding component |
Gene: Daci_2392: Branched-chain amino acid ABC transport system, periplasmic binding component |
|
|
|
|
|
|
|
Branched-chain amino acid ABC transport system, periplasmic binding component |
| acdH |
Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
*
Comamonas testosteroni KF-1 Site: position = -166 score = 5.14609 sequence = GTTTACGTAAACGTCAAA Site: position = -172 score = 5.06344 sequence = CATTCCGTTTACGTAAAC Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
2
Variovorax paradoxus S110 Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3) Gene: Vapar_4282: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 4. | ||||||||||||
| paaH |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -42 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Aave_2867: 3-hydroxyacyl-CoA dehydrogenase |
*
Acidovorax sp. JS42 Site: position = -31 score = 5.29952 sequence = GTTTACGTTAACGTAACT Site: position = -37 score = 6.062 sequence = ATTAACGTTTACGTTAAC Gene: Ajs_1606: 3-hydroxyacyl-CoA dehydrogenase |
*
Comamonas testosteroni KF-1 Site: position = -48 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Site: position = -42 score = 5.09697 sequence = GTTTACGTCAACGTCAAT Gene: CtesDRAFT_5453: 3-hydroxyacyl-CoA dehydrogenase |
*
Delftia acidovorans SPH-1 Site: position = -42 score = 5.55256 sequence = AGTTACGTTTACGTCAAC Gene: Daci_4744: 3-hydroxyacyl-CoA dehydrogenase |
*
Polaromonas naphthalenivorans CJ2 Site: position = -80 score = 5.46161 sequence = GTTGACGTAAACGTCAAA Site: position = -86 score = 6.14145 sequence = ATTGACGTTGACGTAAAC Gene: Pnap_1609: 3-hydroxyacyl-CoA dehydrogenase |
*
Polaromonas sp. JS666 Site: position = -63 score = 5.47325 sequence = GTTTACGTCAACGTCAAC Site: position = -69 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Bpro_3093: 3-hydroxyacyl-CoA dehydrogenase |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -33 score = 5.66139 sequence = GTTTACGTTAACGTCAAT Site: position = -39 score = 6.4975 sequence = ATTGACGTTTACGTTAAC Gene: Rfer_2204: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Vapar_1765: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Veis_2552: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Mpe_A2489: 3-hydroxyacyl-CoA dehydrogenase |
*
Leptothrix cholodnii SP-6 Site: position = -93 score = 5.47325 sequence = GTTTACGTCAACGTCAAC Site: position = -99 score = 6.44968 sequence = ATTGACGTTTACGTCAAC Gene: Lcho_2559: 3-hydroxyacyl-CoA dehydrogenase |
3-hydroxyacyl-CoA dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |