Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Comamonas testosteroni KF-1

Properties
Regulator type: Transcription factor
TF locus tag: CtesDRAFT_4404
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes 15
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 59 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -50
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Position: -44
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: CtesDRAFT_4405
Name: paaI
Funciton: Phenylacetic acid degradation protein paaI
Locus tag: CtesDRAFT_4406
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: CtesDRAFT_4407
Name: cah
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: CtesDRAFT_4408
Name: aceK
Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: CtesDRAFT_4409
Name: ivdA
Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: CtesDRAFT_4410
Name: null
Funciton: hypothetical protein
Locus tag: CtesDRAFT_4411
Name: null
Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Locus tag: CtesDRAFT_4412
Name: null
Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Locus tag: CtesDRAFT_4413
Name: ivdC
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
CtesDRAFT_4405
paaI
Phenylacetic acid degradation protein paaI
CtesDRAFT_4406
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
CtesDRAFT_4407
cah
Carbonic anhydrase (EC 4.2.1.1)
CtesDRAFT_4408
aceK
Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
CtesDRAFT_4409
ivdA
Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
CtesDRAFT_4410
hypothetical protein
CtesDRAFT_4411
pyridoxamine 5'-phosphate oxidase-related, FMN-binding
CtesDRAFT_4412
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
CtesDRAFT_4413
ivdC
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -74
Score: 6.6
Sequence: ATTGACGTTAACGTAAAC
Position: -68
Score: 5
Sequence: GTTAACGTAAACGTCAGT
Locus tag: CtesDRAFT_4404
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
CtesDRAFT_4404
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -44
Score: 5.3
Sequence: GTTTACGTAAACGTCAAT
Locus tag: CtesDRAFT_0547
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: CtesDRAFT_0548
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: CtesDRAFT_0549
Name: livK
Funciton: Branched-chain amino acid ABC transport system, periplasmic binding component
CtesDRAFT_0547
etfB
Electron transfer flavoprotein, beta subunit
CtesDRAFT_0548
etfA
Electron transfer flavoprotein, alpha subunit
CtesDRAFT_0549
livK
Branched-chain amino acid ABC transport system, periplasmic binding component
Position: -172
Score: 5.1
Sequence: CATTCCGTTTACGTAAAC
Position: -166
Score: 5.1
Sequence: GTTTACGTAAACGTCAAA
Locus tag: CtesDRAFT_1104
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
CtesDRAFT_1104
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -48
Score: 6.4
Sequence: ATTGACGTTTACGTCAAC
Position: -42
Score: 5.1
Sequence: GTTTACGTCAACGTCAAT
Locus tag: CtesDRAFT_5453
Name: paaH
Funciton: 3-hydroxyacyl-CoA dehydrogenase
CtesDRAFT_5453
paaH
3-hydroxyacyl-CoA dehydrogenase
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