Regulon of LiuR in Leptothrix cholodnii SP-6
| Regulator type: | Transcription factor |
| TF locus tag: | Lcho_4201 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Comamonadaceae
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -73
Score: 5.7 Sequence: ACTTACGTTTACGTCAAC
Locus tag: Lcho_4201
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Position: -36
Score: 6.6 Sequence: ATTGACGTTAACGTAAAC
Position: -30
Score: 5.2 Sequence: GTTAACGTAAACGTCAAT
Locus tag: Lcho_4202
Name: paaI Funciton: Phenylacetic acid degradation protein paaI
Locus tag: Lcho_4203
Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: Lcho_4204
Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
Locus tag: Lcho_4205
Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
Locus tag: Lcho_4206
Name: null Funciton: Putative amino acid efflux transporter, Rht family
Locus tag: Lcho_4207
Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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paaI
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Phenylacetic acid degradation protein paaI
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cah
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Carbonic anhydrase (EC 4.2.1.1)
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aceK
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Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
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ivdA
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Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
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Putative amino acid efflux transporter, Rht family
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ivdC
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -78
Score: 5.7 Sequence: TATGACGTTTACGTAAAC
Position: -72
Score: 5.3 Sequence: GTTTACGTAAACGTCAAT
Locus tag: Lcho_3844
Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2) |
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mcm
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Methylmalonyl-CoA mutase (EC 5.4.99.2)
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Position: -99
Score: 6.4 Sequence: ATTGACGTTTACGTCAAC
Position: -93
Score: 5.5 Sequence: GTTTACGTCAACGTCAAC
Locus tag: Lcho_2559
Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase |
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paaH
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3-hydroxyacyl-CoA dehydrogenase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |