Regulon of LiuR in Leptothrix cholodnii SP-6

Properties
Regulator type:	Transcription factor
TF locus tag:	Lcho_4201
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	9
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -73 Score: 5.7 Sequence: ACTTACGTTTACGTCAAC Locus tag: Lcho_4201 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Lcho_4201	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -36 Score: 6.6 Sequence: ATTGACGTTAACGTAAAC Position: -30 Score: 5.2 Sequence: GTTAACGTAAACGTCAAT Locus tag: Lcho_4202 Name: paaI Funciton: Phenylacetic acid degradation protein paaI Locus tag: Lcho_4203 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Lcho_4204 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Lcho_4205 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Lcho_4206 Name: null Funciton: Putative amino acid efflux transporter, Rht family Locus tag: Lcho_4207 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Lcho_4202	paaI	Phenylacetic acid degradation protein paaI
	Lcho_4203	cah	Carbonic anhydrase (EC 4.2.1.1)
	Lcho_4204	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Lcho_4205	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Lcho_4206		Putative amino acid efflux transporter, Rht family
	Lcho_4207	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -78 Score: 5.7 Sequence: TATGACGTTTACGTAAAC Position: -72 Score: 5.3 Sequence: GTTTACGTAAACGTCAAT Locus tag: Lcho_3844 Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
	Lcho_3844	mcm	Methylmalonyl-CoA mutase (EC 5.4.99.2)
Position: -99 Score: 6.4 Sequence: ATTGACGTTTACGTCAAC Position: -93 Score: 5.5 Sequence: GTTTACGTCAACGTCAAC Locus tag: Lcho_2559 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Lcho_2559	paaH	3-hydroxyacyl-CoA dehydrogenase

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD