Regulon of LiuR in Polaromonas sp. JS666

Properties
Regulator type:	Transcription factor
TF locus tag:	Bpro_4192
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	13
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -111 Score: 6.3 Sequence: TTTGACGTTTACGTAAAC Locus tag: Bpro_4192 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Bpro_4192	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -135 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -129 Score: 5.3 Sequence: GTTTACGTAAACGTCAAT Locus tag: Bpro_4191 Name: paaI Funciton: Phenylacetic acid degradation protein paaI Locus tag: Bpro_4190 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Bpro_4189 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Bpro_4188 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Bpro_4187 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Bpro_4186 Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Locus tag: Bpro_4185 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Bpro_4191	paaI	Phenylacetic acid degradation protein paaI
	Bpro_4190	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Bpro_4189	cah	Carbonic anhydrase (EC 4.2.1.1)
	Bpro_4188	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Bpro_4187	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Bpro_4186		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	Bpro_4185	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -47 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -41 Score: 5.7 Sequence: GTTTACGTAAACGTCAAC Locus tag: Bpro_4054 Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
	Bpro_4054	mcm	Methylmalonyl-CoA mutase (EC 5.4.99.2)
Position: -46 Score: 5.6 Sequence: GCTTACGTTTACGTCAAC Position: -40 Score: 5.1 Sequence: GTTTACGTCAACGTCAAT Locus tag: Bpro_3143 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Bpro_3142 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: Bpro_3141 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Bpro_3143	etfB	Electron transfer flavoprotein, beta subunit
	Bpro_3142	etfA	Electron transfer flavoprotein, alpha subunit
	Bpro_3141	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -69 Score: 6.4 Sequence: ATTGACGTTTACGTCAAC Position: -63 Score: 5.5 Sequence: GTTTACGTCAACGTCAAC Locus tag: Bpro_3093 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Bpro_3093	paaH	3-hydroxyacyl-CoA dehydrogenase

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