Regulon of LiuR in Acidovorax avenae subsp. citrulli AAC00-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Aave_4372
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	9
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -102 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -96 Score: 4.8 Sequence: GTTTACGTAAACGTAATG Locus tag: Aave_4371 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Aave_4370 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Aave_4369 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Aave_4368 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Aave_4367 Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Locus tag: Aave_4366 Name: null Funciton: acyltransferase 3 Locus tag: Aave_4365 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Aave_4371	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Aave_4370	cah	Carbonic anhydrase (EC 4.2.1.1)
	Aave_4369	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Aave_4368	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Aave_4367		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	Aave_4366		acyltransferase 3
	Aave_4365	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -70 Score: 4.9 Sequence: ATTGACGTGCGCGTCAAC Locus tag: Aave_4372 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Aave_4372	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -42 Score: 6.4 Sequence: ATTGACGTTTACGTCAAC Locus tag: Aave_2867 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Aave_2867	paaH	3-hydroxyacyl-CoA dehydrogenase

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