Regulons of Ralstonia eutropha JMP134
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
2 |
2 |
| TF |
CueR |
Copper ion, (Cu+) |
Copper resistance |
2 |
2 |
| TF |
Dnr |
Nitric oxide |
Denitrification |
1 |
1 |
| TF |
FadP |
|
Fatty acid degradation |
16 |
15 |
| TF |
FdsR |
Formate |
Formate oxydation |
2 |
4 |
| TF |
Fur |
Iron ion, (Fe2+) |
Iron homeostasis |
11 |
11 |
| TF |
GguR |
|
Glucarate utilization; Galactarate utilization |
5 |
8 |
| TF |
H16_A0963 |
|
|
1 |
1 |
| TF |
H16_A0970 |
|
|
2 |
2 |
| TF |
H16_A2655 |
|
Metabolite transport |
2 |
2 |
| TF |
H16_B0275 |
|
|
2 |
2 |
| TF |
H16_B1411 |
|
|
2 |
1 |
| TF |
H16_B1468 |
|
|
2 |
2 |
| TF |
H16_B1761 |
|
|
2 |
2 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
3 |
4 |
| TF |
HpxR |
Xanthine |
Xanthine utilization |
1 |
1 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
7 |
5 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
2 |
| TF |
LexA |
DNA damage |
SOS response |
10 |
11 |
| TF |
LiuQ |
|
Branched-chain amino acid degradation |
2 |
4 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
6 |
8 |
| TF |
LldR |
L-lactate |
Lactate utilization |
2 |
2 |
| TF |
MerR |
Mercury ion, (Hg2+) |
Mercury resistance |
2 |
2 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
2 |
2 |
| TF |
MlnR |
|
Malonate metabolism |
1 |
1 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
1 |
1 |
| TF |
ModE3 |
Tungsten |
Tungsten homeostasis |
2 |
2 |
| TF |
NorR |
Nitric oxide |
Nitrosative stress response |
2 |
5 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
1 |
| TF |
NsrR |
Nitric oxide |
Nitrosative stress response |
2 |
2 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
5 |
6 |
| TF |
OapR |
|
Gamma-aminobutyrate utilization |
1 |
1 |
| TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
4 |
3 |
| TF |
PhnF |
|
Phosphonate utilization |
2 |
2 |
| TF |
PhnR2 |
2-aminoethylphosphonate |
2-aminoethylphosphonate utilization |
4 |
4 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
2 |
2 |
| TF |
RALTA_A0216 |
|
|
1 |
1 |
| TF |
Reut_C5892 |
|
Sugar utilization |
1 |
1 |
| TF |
Rmet_4647 |
|
|
2 |
2 |
| TF |
Rmet_5631 |
|
Glycolate utilization; Lactate utilization |
2 |
4 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
1 |
1 |
| TF |
SdaR |
|
Glucuronate utilization; Glucarate utilization; Galactarate utilization |
1 |
1 |
| TF |
SdhR |
|
Tricarboxylic acid cycle |
7 |
5 |
| TF |
TalR |
L-talarate |
L-talarate utilization |
2 |
4 |
| TF |
TauR |
Taurine |
Taurine utilization |
3 |
2 |
| TF |
UraR |
Uracil |
Pyrimidine utilization |
3 |
5 |
| TF |
YdcR |
|
|
2 |
2 |
| TF |
YrdX3 |
|
|
3 |
2 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
3 |
2 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
1 |
1 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
1 |
1 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
3 |
4 |
| RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
1 |
1 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
1 |
1 |
| RNA |
sucA |
|
Tricarboxylic acid cycle |
1 |
1 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
2 |
2 |
| RNA |
yybP-ykoY |
|
|
1 |
1 |
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