Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pediococcus pentosaceus ATCC 25745

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR2 N-acetylgalactosamine N-acetylgalactosamine utilization 1 1
TF AguR Agmatine utilization 1 1
TF AraR Arabinose Arabinose utilization 2 2
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 2 1
TF BirA Biotin Biotin biosynthesis 2 1
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 55 56
TF CggR Fructose-1,6-bisphosphate Glycolysis 1 1
TF CopR Copper ion, (Cu2+) Copper homeostasis 1 2
TF CtsR Heat shock Heat shock response 7 5
TF CzcR2 Zinc resistance; Cobalt resistance; Cadmium resistance 2 2
TF FlpA Oxygen Heavy metal resistance 2 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF GalR Galactose Galactosides utilization; Galactose utilization 5 8
TF GlnR Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 2
TF GntR1 Gluconate Gluconate utilization 2 4
TF HrcA Heat shock Heat shock response 6 3
TF LexA DNA damage SOS response 11 7
TF Lp_2742 Multidrug efflux; Multidrug resistance 2 2
TF MalR Maltose Maltose utilization; Maltodextrin utilization 2 1
TF MleR L-malate Malate utilization 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 7 8
TF NiaR Niacin NAD biosynthesis 2 2
TF NihR Nickel homeostasis 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 5 5
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 1 1
TF PerR Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide Manganese homeostasis; Oxidative stress response; Iron homeostasis 5 2
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 9 6
TF RbsR Ribose Ribose utilization 2 2
TF Rex NADH Energy metabolism 8 3
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 4
TF TagR Tagatose-6-phosphate Tagatose utilization 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 2 4
TF XylR Xylose Xylose utilization 2 2
TF YhcF Multidrug resistance; Multidrug efflux 2 1
TF YwzG Transport 1 1
TF YxeR Antibiotic resistance 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 3 1
RNA PyrR PyrR Pyrimidine metabolism 6 3
RNA S15 Ribosome biogenesis 1 1
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 2 2
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 1 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 3 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 1 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 1 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 2
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA THF Tetrahydrofolate Folate metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA preQ1-II Pre-queuosine Queuosine biosynthesis 2 1
RNA yybP-ykoY 1 1
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