Regulons of Bifidobacterium breve DSM 20213

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AraQ		Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization	12	11
TF	ArgR	Arginine	Arginine biosynthesis	4	6
TF	BDP_1267		Carbohydrate metabolism	2	2
TF	BDP_2100		Carbohydrate metabolism	1	1
TF	BDP_2111		Carbohydrate metabolism	2	1
TF	BIFBRE_03467		Carbohydrate metabolism	1	1
TF	BIFBRE_03542		Carbohydrate metabolism	1	2
TF	BLA_0357		Galactooligosaccharide utilization	2	2
TF	BgaR	Beta-galactosides	Galactosides utilization	3	2
TF	BglR	Beta-glucoside	Beta-glucosides utilization	2	1
TF	BgrT1		Beta-glucosides utilization	2	2
TF	BgrT2		Beta-glucosides utilization	1	1
TF	Crp		Tricarboxylic acid cycle; Energy metabolism	11	10
TF	CscR	Sucrose	Sucrose utilization	1	2
TF	CsoR	Copper ion, (Cu+)	Copper homeostasis	2	2
TF	FruR		Fructose utilization	2	1
TF	FucR	Fucose	Fucose utilization	4	2
TF	GalR		Galactose utilization	1	2
TF	GlcR		Glucose utilization	1	1
TF	GosR	Galactobiose	Galactooligosaccharide utilization; Galactan utilization	2	2
TF	HrcA	Heat shock	Heat shock response	3	4
TF	LacR	Lactose	Lactose utilization	5	5
TF	LexA	DNA damage	SOS response	10	10
TF	LtbR		Leucine biosynthesis	2	2
TF	MalR1/MalR2/MalR3	Maltose	Maltose utilization; Maltodextrin utilization	15	17
TF	MsmR1	Alpha-galactosides	Alpha-galactosides utilization	1	1
TF	NagR	N-acetylglucosamine-6-phosphate	Lacto-N-biose utilization; Galacto-N-biose utilization	6	9
TF	NanR	Sialic acid	Sialic acid utilization	3	3
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	NrtR	Adenosine diphosphate ribose	NAD biosynthesis	1	1
TF	PtsR		Carbohydrate metabolism	2	2
TF	RafR		Raffinose utilization	3	2
TF	RbsR2	Ribose	Ribonucleoside utilization	1	2
TF	RbtR		Ribitol utilization; Xylitol utilization	1	1
TF	ScrR	Sucrose	Sucrose utilization	2	3
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	6	5
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	5	4

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Bifidobacterium breve DSM 20213

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --