Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Bifidobacterium breve DSM 20213

Properties
Regulator type: Transcription factor
TF locus tag: BIFBRE_00709
Regulator family: CRP
Regulation mode:
Biological process: Tricarboxylic acid cycle; Energy metabolism
Effector:
Regulog: Crp - Bifidobacteriaceae
Statistics of regulated genes:
- Genes 13
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -113
Score: 5.3
Sequence: GAATGTGAGATAGCTCACTCCC
Locus tag: BIFBRE_01106
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: BIFBRE_01107
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)

Position: -208
Score: 4.6
Sequence: AACCGTGACGATACTCACATGA
Locus tag: BIFBRE_01254
Name: null
Funciton: Major facilitator superfamily, general substrate transporter
Major facilitator superfamily, general substrate transporter

Position: -66
Score: 4.7
Sequence: AAACGTGACCTTCCTCACAGCT
Locus tag: BIFBRE_00121
Name: nox
Funciton: Uncharacterized NAD(FAD)-dependent dehydrogenase
nox
Uncharacterized NAD(FAD)-dependent dehydrogenase

Position: -76
Score: 4.3
Sequence: ACACGTGTCATAAATCACGCAC
Position: -38
Score: 4.7
Sequence: GATTGTGACGTACAGCACTGGG
Locus tag: BIFBRE_00271
Name: aldB
Funciton: Alpha-acetolactate decarboxylase (EC 4.1.1.5)
aldB
Alpha-acetolactate decarboxylase (EC 4.1.1.5)

Position: -162
Score: 5.2
Sequence: AAATGTGAACAATGCCACATAT
Locus tag: BIFBRE_00660
Name: nrdH
Funciton: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Locus tag: BIFBRE_00659
Name: nrdI
Funciton: Ribonucleotide reduction protein NrdI
Locus tag: BIFBRE_00658
Name: nrdE
Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
nrdH
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
nrdI
Ribonucleotide reduction protein NrdI
nrdE
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)

Position: -171
Score: 5.5
Sequence: AATAGTGACCTAGCTCACGTTG
Locus tag: BIFBRE_01899
Name: ilvC2
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
ilvC2
Ketol-acid reductoisomerase (EC 1.1.1.86)

Position: -183
Score: 5.8
Sequence: TAACGTGACGAAAATCACATAA
Locus tag: BIFBRE_01807
Name: ldh
Funciton: L-lactate dehydrogenase (EC 1.1.1.27)
ldh
L-lactate dehydrogenase (EC 1.1.1.27)

Position: -126
Score: 5.6
Sequence: TATTGTGATGCAGGTCACAGGC
Locus tag: BIFBRE_00269
Name: adh
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adh
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -50
Score: 4.8
Sequence: AGCTGTGAGGCAGGTCACGAAC
Locus tag: BIFBRE_00201
Name: ispD
Funciton: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)
Locus tag: BIFBRE_00202
Name: pcp
Funciton: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)
pcp
Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD