Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TPP in Bifidobacterium breve DSM 20213

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Bifidobacteriaceae
Under regulation:
- Genes 8
- Operons 4
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -279
Score: 51.3
Sequence: CGTAACGAACGGGAG...
Locus tag: BIFBRE_00980
Name: thiS
Funciton: Sulfur carrier protein ThiS
Locus tag: BIFBRE_00981
Name: thiG
Funciton: Thiazole biosynthesis protein ThiG
thiS
Sulfur carrier protein ThiS
thiG
Thiazole biosynthesis protein ThiG

Position: -170
Score: 46.3
Sequence: GGAGTTGACACGGGA...
Locus tag: BIFBRE_00957
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00958
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: BIFBRE_00959
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoD
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoC
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Position: -201
Score: 58.2
Sequence: CAACGTAATGCAGGG...
Locus tag: BIFBRE_00589
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: BIFBRE_00588
Name: thiEC
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC
thiM
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiEC
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC

Position: -156
Score: 38
Sequence: GCGCATTGCAGGGGA...
Locus tag: BIFBRE_01283
Name: tenA
Funciton: Thiaminase II (EC 3.5.99.2)
tenA
Thiaminase II (EC 3.5.99.2)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD