Regulon of NanR in Bifidobacterium breve DSM 20213
| Regulator type: | Transcription factor |
| TF locus tag: | BIFBRE_01963 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization |
| Effector: | Sialic acid |
| Regulog: | NanR - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - GntR/Others
- By effector - Sialic acid
- By pathway - Sialic acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -149
Score: 5.5 Sequence: ATAAGTTGTCTGATGTCTTAA
Position: -42
Score: 5.8 Sequence: ATCAGACATCAGATGTCATAT
Locus tag: BIFBRE_01954
Name: nanB Funciton: Predicted sialic acid ABC transporter, solute binding component
Locus tag: BIFBRE_01955
Name: nanC Funciton: Predicted sialic acid ABC transporter, permease component
Locus tag: BIFBRE_01956
Name: nanD Funciton: Predicted sialic acid ABC transporter, permease component and ATP-binding component
Locus tag: BIFBRE_01957
Name: nanF Funciton: Predicted sialic acid ABC transporter, ATP binding component
Locus tag: BIFBRE_01958
Name: nanA Funciton: N-acetylneuraminate lyase (EC 2.5.1.56)
Locus tag: BIFBRE_01959
Name: nagB2 Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nanB
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Predicted sialic acid ABC transporter, solute binding component
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nanC
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Predicted sialic acid ABC transporter, permease component
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nanD
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Predicted sialic acid ABC transporter, permease component and ATP-binding component
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nanF
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Predicted sialic acid ABC transporter, ATP binding component
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nanA
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N-acetylneuraminate lyase (EC 2.5.1.56)
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nagB2
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Position: -36
Score: 6.3 Sequence: ATTGGACATCAGACGTCTGAT
Locus tag: BIFBRE_01949
Name: SSF51658 Funciton: Xylose isomerase-like, TIM barrel domain
Locus tag: BIFBRE_01950
Name: nanK Funciton: N-acetylmannosamine kinase (EC 2.7.1.60) |
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SSF51658
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Xylose isomerase-like, TIM barrel domain
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nanK
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N-acetylmannosamine kinase (EC 2.7.1.60)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |