# TF - LtbR: BIFBRE_00110
>BIFBRE_00110(ltbR) Score=6.2 Pos=-36 [Bifidobacterium breve DSM 20213]
TATTTCACTATGTGAGATG
>BIFBRE_00111(leuC) Score=6.2 Pos=-178 [Bifidobacterium breve DSM 20213]
CATCTCACATAGTGAAATA
# TF - NrdR: BIFBRE_01802
>BIFBRE_00457(nrdD) Score=3.9 Pos=-174 [Bifidobacterium breve DSM 20213]
CCACTATAAATAGTTC
>BIFBRE_00457(nrdD) Score=5.1 Pos=-142 [Bifidobacterium breve DSM 20213]
ACACTAGATATAGGGG
>BIFBRE_00660(nrdH) Score=4.5 Pos=-75 [Bifidobacterium breve DSM 20213]
CCACTATATCTAGGTT
>BIFBRE_00660(nrdH) Score=5.2 Pos=-43 [Bifidobacterium breve DSM 20213]
CCACTACATATAGTGC
# TF - AraQ: BIFBRE_02212
>BIFBRE_01690(gap) Score=6.2 Pos=-155 [Bifidobacterium breve DSM 20213]
CAATGTGAGCGCTCACAAAA
>BIFBRE_01051(pyk) Score=6 Pos=-77 [Bifidobacterium breve DSM 20213]
CAGTGTGAGCGCTCACAACA
>BIFBRE_01332(tkt) Score=5.8 Pos=-156 [Bifidobacterium breve DSM 20213]
AATTGTGAACGCTAACAGAA
>BIFBRE_01694(galM) Score=4.9 Pos=-44 [Bifidobacterium breve DSM 20213]
GATTGCGAGCGGTAACAATA
>BIFBRE_01039(glgB) Score=5.4 Pos=-108 [Bifidobacterium breve DSM 20213]
CAATGAGAGCGCTCACAATC
>BIFBRE_00012(malE) Score=4.9 Pos=-229 [Bifidobacterium breve DSM 20213]
GCATGTTAGCGCTCTCATTG
>BIFBRE_00165 Score=5.2 Pos=-213 [Bifidobacterium breve DSM 20213]
CGGTGTGAACGCTCACACGT
>BIFBRE_00166 Score=5.2 Pos=-107 [Bifidobacterium breve DSM 20213]
ACGTGTGAGCGTTCACACCG
>BIFBRE_01807(ldh) Score=5.9 Pos=-160 [Bifidobacterium breve DSM 20213]
GGCTGTGAGCGCTAACAACT
>BIFBRE_01016(eno) Score=6.1 Pos=-108 [Bifidobacterium breve DSM 20213]
CATTGTGAGCGCTCACATCA
>BIFBRE_02212(araQ) Score=5.4 Pos=-146 [Bifidobacterium breve DSM 20213]
CAATGTGAGCGCTCACGCGA
# RNA - FMN
>BIFBRE_00572(ribU) Score=88.2 Pos=-138 [Bifidobacterium breve DSM 20213]
CTGTCAGTTTCAGGGAAGGTGTAATTCCTTACTGGCGGTGATCTGCACTCCGGGTTTCATAACGGAGATGTCAGGAAGCCCGCGACCCGCGTAAGCGGCTGATCCGGTGAGATTCCGGAGCCAACGGTTATAGTCCGGATGGAAGAAACGAGGG
# RNA - TPP
>BIFBRE_01283(tenA) Score=38 Pos=-156 [Bifidobacterium breve DSM 20213]
GCGCATTGCAGGGGAACCCGTGAACCAAGCCGATACCAGCCGAGCCGGTACGGTGCCATTCGCGCCGAGACCGAATCAATCGCCGACATGCGGGTTGAGAAAAGGCATAAGGCCTGACCCTTGGAGCCTGTTGGCCAACACCATCGGAGGGAGCAAATGATGACTTTTGAC
>BIFBRE_00589(thiM) Score=58.2 Pos=-201 [Bifidobacterium breve DSM 20213]
CAACGTAATGCAGGGGAACTCGCATGTGGTTCGCGAGTTGAGAAAGGCCTAAGCCTGACCCTTAGAACCTGTTGGTTAAGACCATCGTAGGGAGCAGTAATGAGCAGTAG
>BIFBRE_00957(ykoE) Score=46.3 Pos=-170 [Bifidobacterium breve DSM 20213]
GGAGTTGACACGGGAGCTGCCGACAGGCGGCTGAGAGGAGACGCATAGTCTCGACCGATGGAACGTGACCGGATAATGCTGGCGCACGGAATTGTCGCTCTTATTTACC
>BIFBRE_00980(thiS) Score=51.3 Pos=-279 [Bifidobacterium breve DSM 20213]
CGTAACGAACGGGAGCCGTAAGGCTGAGAGGAAGTTGCCAGACTTCGACCGGGGAACTTGACGCGGGTCATGCCGCCGTAAGGAATCGTTGTTCTTGATTTGT
# TF - HrcA: BIFBRE_01333
>BIFBRE_01333(hrcA) Score=6.7 Pos=-95 [Bifidobacterium breve DSM 20213]
TTAGCACTCGAAACCAATGAGTGCTAA
>BIFBRE_00229(groS) Score=7.4 Pos=-138 [Bifidobacterium breve DSM 20213]
TTAGCACTCGAGTTGGCAGAGTGCTAA
>BIFBRE_00532(groL) Score=7 Pos=-111 [Bifidobacterium breve DSM 20213]
TTAGCACTCGGAGATCGAGAGTGATAA
>BIFBRE_00532(groL) Score=7 Pos=-146 [Bifidobacterium breve DSM 20213]
TTGGCACTCGGCAAGGGCGAGTGCTAA
# TF - BIFBRE_03467: BIFBRE_00795
>BIFBRE_00793 Score=8.5 Pos=-118 [Bifidobacterium breve DSM 20213]
CGTCGA-----TCGAAA
# TF - ArgR: BIFBRE_00969
>BIFBRE_00979(argH) Score=4.7 Pos=-207 [Bifidobacterium breve DSM 20213]
TTGCGTATATATTCAA
>BIFBRE_00755(artX) Score=5.3 Pos=-87 [Bifidobacterium breve DSM 20213]
TTGTATATGTATGCAC
>BIFBRE_00755(artX) Score=5.1 Pos=-67 [Bifidobacterium breve DSM 20213]
GTGTATAAATATGCTT
>BIFBRE_00970(argG) Score=5.6 Pos=-72 [Bifidobacterium breve DSM 20213]
GTGCATAAATATACAA
>BIFBRE_00970(argG) Score=4.2 Pos=-52 [Bifidobacterium breve DSM 20213]
CTGTATATACTTACAT
>BIFBRE_00964(argC) Score=5.3 Pos=-66 [Bifidobacterium breve DSM 20213]
CTGTATAACTATGCAA
# TF - LexA: BIFBRE_01804
>BIFBRE_01637(recA) Score=5.7 Pos=-157 [Bifidobacterium breve DSM 20213]
TCGAACAAATGTTCGC
>BIFBRE_01347(ruvA) Score=6 Pos=-36 [Bifidobacterium breve DSM 20213]
TCGAACAGTTGTTCGA
>BIFBRE_01804(lexA) Score=5.7 Pos=-67 [Bifidobacterium breve DSM 20213]
TCGAACAGATGTTTGA
>BIFBRE_01621(lhr) Score=5.7 Pos=22 [Bifidobacterium breve DSM 20213]
TCGAACATATGTGCGA
>BIFBRE_01804(lexA) Score=5.4 Pos=-120 [Bifidobacterium breve DSM 20213]
TCGAACATCTGTTCTT
>BIFBRE_01804(lexA) Score=5 Pos=-100 [Bifidobacterium breve DSM 20213]
TGGCACAAATGTTCGA
>BIFBRE_01317(uvrA) Score=6 Pos=-106 [Bifidobacterium breve DSM 20213]
TCGAACATGTGTTCGA
>BIFBRE_00833(dinP1) Score=6.1 Pos=-8 [Bifidobacterium breve DSM 20213]
TCGAACAAATGTTCGA
>BIFBRE_00563(rarA) Score=5.9 Pos=-39 [Bifidobacterium breve DSM 20213]
TCGAACGTCTGTTCGA
>BIFBRE_01804(lexA) Score=5.6 Pos=-136 [Bifidobacterium breve DSM 20213]
TCGAACAAGTGTTCTA
# TF - CsoR: BIFBRE_02066
>BIFBRE_02066(csoR) Score=6.3 Pos=-8 [Bifidobacterium breve DSM 20213]
ATACCCCTATGGGGTAT
>BIFBRE_02065(copA) Score=6.3 Pos=-64 [Bifidobacterium breve DSM 20213]
ATACCCCATAGGGGTAT
# TF - NrtR: BIFBRE_01679
>BIFBRE_01679(nrtR) Score=6.5 Pos=-29 [Bifidobacterium breve DSM 20213]
TTATAGTCATTATGACTATAA
# TF - Zur: BIFBRE_00816, BIFBRE_00810
>BIFBRE_00822(rpsN2) Score=5.7 Pos=-19 [Bifidobacterium breve DSM 20213]
TATTGAGAATTATTATCATTT
>BIFBRE_01806(czcD) Score=5.5 Pos=-211 [Bifidobacterium breve DSM 20213]
AAATGAGAAGCGGTTTCAACA
>BIFBRE_00816(zur) Score=5.1 Pos=-45 [Bifidobacterium breve DSM 20213]
TAACGATAATGAATATCATTT
>BIFBRE_00824(znuA) Score=6.1 Pos=-287 [Bifidobacterium breve DSM 20213]
AAATGATAATAATTCTCAATA
>BIFBRE_01043(znuC) Score=6.3 Pos=-43 [Bifidobacterium breve DSM 20213]
TATTGAGAACGATTGTCAGCA
# TF - BglR: BIFBRE_00246
>BIFBRE_00248(bglE) Score=6.4 Pos=-52 [Bifidobacterium breve DSM 20213]
CAATCTACGCGGTTAGATTG
# TF - BIFBRE_03542: BIFBRE_00877
>BIFBRE_00875 Score=6.8 Pos=-275 [Bifidobacterium breve DSM 20213]
TGCTGAGAACGCTCCCAATA
>BIFBRE_00875 Score=6.8 Pos=-137 [Bifidobacterium breve DSM 20213]
CACTGGGAGCGCTCCGAAGA
# TF - GosR: BIFBRE_02226
>BIFBRE_02223(gosB) Score=6.3 Pos=-260 [Bifidobacterium breve DSM 20213]
TTGGTACACAGGTGTATCAT
>BIFBRE_02223(gosB) Score=5.6 Pos=-232 [Bifidobacterium breve DSM 20213]
TTGGTACATGGGTGTACCAA
# TF - BDP_1267: BIFBRE_00098
>BIFBRE_00098(BDP_1267) Score=6 Pos=-226 [Bifidobacterium breve DSM 20213]
TCATTAGAACGTTCAAATAA
>BIFBRE_00099(BDP_1268) Score=6 Pos=-86 [Bifidobacterium breve DSM 20213]
TTATTTGAACGTTCTAATGA
# TF - CscR: BIFBRE_00578
>BIFBRE_00577(cscB) Score=6.8 Pos=-114 [Bifidobacterium breve DSM 20213]
GACGTAAATCGATTGACGTC
>BIFBRE_00577(cscB) Score=7.1 Pos=-128 [Bifidobacterium breve DSM 20213]
GACGTCAATCGATTGACGTA
# TF - BDP_2100: BIFBRE_00641
>BIFBRE_00641 Score=6.7 Pos=-22 [Bifidobacterium breve DSM 20213]
AAAAATAAACGTTTAGGATT
# TF - BDP_2111: BIFBRE_02138
>BIFBRE_02141(BIFBRE_02141) Score=6.2 Pos=-81 [Bifidobacterium breve DSM 20213]
TTATCTTAACGATACGATAT
# TF - FucR: BIFBRE_00139
>BIFBRE_00138(fucD) Score=5 Pos=-88 [Bifidobacterium breve DSM 20213]
AAAAATTTTCGCAAATAGGC
>BIFBRE_00139(fucR) Score=5 Pos=79 [Bifidobacterium breve DSM 20213]
GCCTATTTGCGAAAATTTTT
# TF - GlcR: BIFBRE_00328
>BIFBRE_00327(ptsG) Score=9.3 Pos=-192 [Bifidobacterium breve DSM 20213]
AGGGTTGCTACTC-------GAGGCAAGACCTG
# TF - PtsR: BIFBRE_01975
>BIFBRE_01976(hpr) Score=5.9 Pos=-74 [Bifidobacterium breve DSM 20213]
AACGGTAATCGTTTTCTGGA
>BIFBRE_01978(ptsI) Score=5.9 Pos=-164 [Bifidobacterium breve DSM 20213]
TCCAGAAAACGATTACCGTT
# TF - RafR: BIFBRE_00617
>BIFBRE_00616(rafB) Score=5.5 Pos=-152 [Bifidobacterium breve DSM 20213]
TTTATTGCGTTAATCACAAAATA
>BIFBRE_00617(rafR) Score=5.5 Pos=-25 [Bifidobacterium breve DSM 20213]
TATTTTGTGATTAACGCAATAAA
# TF - MsmR1: BIFBRE_01266
>BIFBRE_01266(msmR1) Score=6.2 Pos=-181 [Bifidobacterium breve DSM 20213]
TTCTGAAACCGGTTTCAGAA
# TF - FruR: BIFBRE_01709
>BIFBRE_01709(fruR) Score=7 Pos=-91 [Bifidobacterium breve DSM 20213]
ATAGATTAACTACGTTAATATCT
# TF - LacR: BIFBRE_01477, BIFBRE_00376
>BIFBRE_00378(lacS) Score=4.1 Pos=-146 [Bifidobacterium breve DSM 20213]
AGTTCTATACTGAAGTTTT
>BIFBRE_00376(lacR) Score=5.2 Pos=-32 [Bifidobacterium breve DSM 20213]
AACCCTTTACTAAAGTTTG
>BIFBRE_01480(lacZ) Score=5 Pos=-56 [Bifidobacterium breve DSM 20213]
TTATATTTAGTAAACATTT
>BIFBRE_01480(lacZ) Score=3.9 Pos=-221 [Bifidobacterium breve DSM 20213]
AAACCATAACTAAATGCAT
>BIFBRE_00377(lacZ) Score=4.1 Pos=-303 [Bifidobacterium breve DSM 20213]
AAAACTTCAGTATAGAACT
# TF - RbsR2: BIFBRE_00472
>BIFBRE_00473(BL1769) Score=6.1 Pos=-67 [Bifidobacterium breve DSM 20213]
TTGGTAAAAGGTTATATCAT
>BIFBRE_00473(BL1769) Score=6.5 Pos=-35 [Bifidobacterium breve DSM 20213]
TTGATTAAACGTTTTATCAA
# TF - GalR: BIFBRE_00714
>BIFBRE_00714(galR) Score=7.7 Pos=-18 [Bifidobacterium breve DSM 20213]
GTGTGCG---ATGTTCG
>BIFBRE_00714(galR) Score=6.9 Pos=-122 [Bifidobacterium breve DSM 20213]
ATGTGCG---TTGCGCG
# TF - Crp: BIFBRE_00709
>BIFBRE_00269(adh) Score=5.6 Pos=-126 [Bifidobacterium breve DSM 20213]
TATTGTGATGCAGGTCACAGGC
>BIFBRE_01106(pflB) Score=5.3 Pos=-113 [Bifidobacterium breve DSM 20213]
GAATGTGAGATAGCTCACTCCC
>BIFBRE_01807(ldh) Score=5.8 Pos=-183 [Bifidobacterium breve DSM 20213]
TAACGTGACGAAAATCACATAA
>BIFBRE_00201(ispD) Score=4.8 Pos=-50 [Bifidobacterium breve DSM 20213]
AGCTGTGAGGCAGGTCACGAAC
>BIFBRE_01899(ilvC2) Score=5.5 Pos=-171 [Bifidobacterium breve DSM 20213]
AATAGTGACCTAGCTCACGTTG
>BIFBRE_00660(nrdH) Score=5.2 Pos=-162 [Bifidobacterium breve DSM 20213]
AAATGTGAACAATGCCACATAT
>BIFBRE_00271(aldB) Score=4.3 Pos=-76 [Bifidobacterium breve DSM 20213]
ACACGTGTCATAAATCACGCAC
>BIFBRE_00271(aldB) Score=4.7 Pos=-38 [Bifidobacterium breve DSM 20213]
GATTGTGACGTACAGCACTGGG
>BIFBRE_00121(nox) Score=4.7 Pos=-66 [Bifidobacterium breve DSM 20213]
AAACGTGACCTTCCTCACAGCT
>BIFBRE_01254 Score=4.6 Pos=-208 [Bifidobacterium breve DSM 20213]
AACCGTGACGATACTCACATGA
# TF - BLA_0357: BIFBRE_00264
>BIFBRE_00264(BLA_0357) Score=5.2 Pos=-75 [Bifidobacterium breve DSM 20213]
ATTTCAAAAAGTCTTTTGCTAAA
>BIFBRE_00259(glgX) Score=6.3 Pos=-215 [Bifidobacterium breve DSM 20213]
TTTTGCAAATTTCTTTTCATAAA
# TF - ScrR: BIFBRE_01889, BIFBRE_01893
>BIFBRE_01891(scrP) Score=6.4 Pos=-156 [Bifidobacterium breve DSM 20213]
GCATCAAACCGGTTCGACAC
>BIFBRE_01891(scrP) Score=6.7 Pos=-91 [Bifidobacterium breve DSM 20213]
ATATCAAACCGGTTCGATAC
>BIFBRE_01889(scrR) Score=5.9 Pos=-95 [Bifidobacterium breve DSM 20213]
CTGTCGAACAGGTTCGAGAG
# TF - MalR1/MalR2/MalR3: BIFBRE_01901, BIFBRE_01915, BIFBRE_00013
>BIFBRE_00012(malE) Score=4.8 Pos=-209 [Bifidobacterium breve DSM 20213]
TTGCCAACGCTTGCAT
>BIFBRE_00012(malE) Score=5.1 Pos=-109 [Bifidobacterium breve DSM 20213]
ATGCCATCGTTTGCAA
>BIFBRE_00014(malF) Score=5.2 Pos=-239 [Bifidobacterium breve DSM 20213]
TTACAAACGTTTGCAG
>BIFBRE_00013(malR1) Score=5.2 Pos=-108 [Bifidobacterium breve DSM 20213]
CTGCAAACGTTTGTAA
>BIFBRE_01907(malQ) Score=5.2 Pos=-121 [Bifidobacterium breve DSM 20213]
TTGCAATCGTTGTCAA
>BIFBRE_01901(malR2) Score=5 Pos=-240 [Bifidobacterium breve DSM 20213]
ATGCAAACGATGTCAA
>BIFBRE_02204(pgi) Score=4.3 Pos=-141 [Bifidobacterium breve DSM 20213]
GTGCAATCGATGTCAT
>BIFBRE_00575(ppgK) Score=4.9 Pos=-26 [Bifidobacterium breve DSM 20213]
ATGCACACGTTTGCAC
>BIFBRE_01915(malR3) Score=5.5 Pos=-240 [Bifidobacterium breve DSM 20213]
TTGACAACGTTTGCAA
>BIFBRE_01915(malR3) Score=5 Pos=-175 [Bifidobacterium breve DSM 20213]
CTGCATACGTTCGCAA
>BIFBRE_01909(agl3) Score=5.2 Pos=-85 [Bifidobacterium breve DSM 20213]
TTGCATACGTATGCAG
>BIFBRE_01916(aapA) Score=5 Pos=-157 [Bifidobacterium breve DSM 20213]
TTGCGAACGTATGCAG
>BIFBRE_01916(aapA) Score=5.5 Pos=-92 [Bifidobacterium breve DSM 20213]
TTGCAAACGTTGTCAA
>BIFBRE_01909(agl3) Score=4.9 Pos=-212 [Bifidobacterium breve DSM 20213]
ATGCACACGTTTTCAG
>BIFBRE_00256(malQ1) Score=5.1 Pos=-67 [Bifidobacterium breve DSM 20213]
TTGCAAACGTAAGCAT
>BIFBRE_01910(malE1) Score=5.2 Pos=-187 [Bifidobacterium breve DSM 20213]
CTGCATACGTATGCAA
>BIFBRE_01910(malE1) Score=4.9 Pos=-60 [Bifidobacterium breve DSM 20213]
CTGAAAACGTGTGCAT
# TF - NanR: BIFBRE_01963
>BIFBRE_01949(SSF51658) Score=6.3 Pos=-36 [Bifidobacterium breve DSM 20213]
ATTGGACATCAGACGTCTGAT
>BIFBRE_01954(nanB) Score=5.5 Pos=-149 [Bifidobacterium breve DSM 20213]
ATAAGTTGTCTGATGTCTTAA
>BIFBRE_01954(nanB) Score=5.8 Pos=-42 [Bifidobacterium breve DSM 20213]
ATCAGACATCAGATGTCATAT
# TF - RbtR: BIFBRE_00268
>BIFBRE_00266(rbtT) Score=5.9 Pos=-125 [Bifidobacterium breve DSM 20213]
AAAAAAGTATCA
# TF - NagR: BIFBRE_01707
>BIFBRE_01707(nagR) Score=5.5 Pos=-116 [Bifidobacterium breve DSM 20213]
ATTAGTGAAGTTCCCTAACAGAT
>BIFBRE_01706(nagB) Score=5.5 Pos=-180 [Bifidobacterium breve DSM 20213]
ATCTGTTAGGGAACTTCACTAAT
>BIFBRE_00332(lnbA) Score=5.2 Pos=-96 [Bifidobacterium breve DSM 20213]
AATTGTTAGTTAGGTTGACAATA
>BIFBRE_00332(lnbA) Score=4.6 Pos=-184 [Bifidobacterium breve DSM 20213]
CTTTGTAAGGAGTATTAATAAAA
>BIFBRE_01706(nagB) Score=6 Pos=-100 [Bifidobacterium breve DSM 20213]
AATTGTAAGTAGTATTAACAAAT
>BIFBRE_01708(nagK) Score=5.3 Pos=-78 [Bifidobacterium breve DSM 20213]
ATTTGTTAAGATAGTTGTCAATA
>BIFBRE_00337(nahK) Score=4.8 Pos=-69 [Bifidobacterium breve DSM 20213]
TTATGTATATATACTTAACAAAT
>BIFBRE_00635(galT2) Score=5.9 Pos=-40 [Bifidobacterium breve DSM 20213]
AATTGTTAGGGTAATTAACAATA
>BIFBRE_01707(nagR) Score=6 Pos=-196 [Bifidobacterium breve DSM 20213]
ATTTGTTAATACTACTTACAATT
# TF - BgaR: BIFBRE_00761
>BIFBRE_00764(bgaX) Score=5.3 Pos=-156 [Bifidobacterium breve DSM 20213]
AGATGTTATCGCAACCATAG
>BIFBRE_00761(bgaR) Score=5.5 Pos=-208 [Bifidobacterium breve DSM 20213]
AATTGTTTACGTTATCATCA
# TF - BgrT1: BIFBRE_00467
>BIFBRE_00467(bgrT1) Score=6.3 Pos=-92 [Bifidobacterium breve DSM 20213]
ACCAACCGGTTGGTAGGT
>BIFBRE_00468(bglX1) Score=6.3 Pos=-172 [Bifidobacterium breve DSM 20213]
ACCTACCAACCGGTTGGT
# TF - BgrT2: BIFBRE_00461
>BIFBRE_00462(bglX2) Score=7 Pos=-56 [Bifidobacterium breve DSM 20213]
AACTACCAATTGGTAATT