Regulon of NagR in Bifidobacterium breve DSM 20213

Properties
Regulator type:	Transcription factor
TF locus tag:	BIFBRE_01707
Regulator family:	ROK
Regulation mode:
Biological process:	Lacto-N-biose utilization; Galacto-N-biose utilization
Effector:	N-acetylglucosamine-6-phosphate
Regulog:	NagR - Bifidobacteriaceae
Statistics of regulated genes:
- Genes	11
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 28 sites [see more]

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By TF family - ROK
By effector - N-acetylglucosamine-6-phosphate
By pathway - Lacto-N-biose utilization
By pathway - Galacto-N-biose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -69 Score: 4.8 Sequence: TTATGTATATATACTTAACAAAT Locus tag: BIFBRE_00337 Name: nahK Funciton: N-acetylhexosamine 1-kinase (EC:2.7.1.162) Locus tag: BIFBRE_00338 Name: galE2 Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
	BIFBRE_00337	nahK	N-acetylhexosamine 1-kinase (EC:2.7.1.162)
	BIFBRE_00338	galE2	UDP-glucose 4-epimerase (EC 5.1.3.2)
Position: -40 Score: 5.9 Sequence: AATTGTTAGGGTAATTAACAATA Locus tag: BIFBRE_00635 Name: galT2 Funciton: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12)
	BIFBRE_00635	galT2	UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Position: -184 Score: 4.6 Sequence: CTTTGTAAGGAGTATTAATAAAA Position: -96 Score: 5.2 Sequence: AATTGTTAGTTAGGTTGACAATA Locus tag: BIFBRE_00332 Name: lnbA Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein Locus tag: BIFBRE_00333 Name: lnbB Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 Locus tag: BIFBRE_00334 Name: lnbC Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 Locus tag: BIFBRE_00335 Name: lnpA Funciton: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211)
	BIFBRE_00332	lnbA	Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein
	BIFBRE_00333	lnbB	Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1
	BIFBRE_00334	lnbC	Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2
	BIFBRE_00335	lnpA	1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211)
Position: -78 Score: 5.3 Sequence: ATTTGTTAAGATAGTTGTCAATA Locus tag: BIFBRE_01708 Name: nagK Funciton: Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59)
	BIFBRE_01708	nagK	Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59)
Position: -196 Score: 6 Sequence: ATTTGTTAATACTACTTACAATT Position: -116 Score: 5.5 Sequence: ATTAGTGAAGTTCCCTAACAGAT Locus tag: BIFBRE_01707 Name: nagR Funciton: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family
	BIFBRE_01707	nagR	Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family
Position: -180 Score: 5.5 Sequence: ATCTGTTAGGGAACTTCACTAAT Position: -100 Score: 6 Sequence: AATTGTAAGTAGTATTAACAAAT Locus tag: BIFBRE_01706 Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Locus tag: BIFBRE_01705 Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
	BIFBRE_01706	nagB	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
	BIFBRE_01705	nagA	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)

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