Regulog NagR - Bifidobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | |
| Biological process: | Lacto-N-biose utilization; Galacto-N-biose utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - Lacto-N-biose utilization
- By pathway - Galacto-N-biose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium longum subsp. infantis ATCC 15697 | 11 | 4 |
| Bifidobacterium adolescentis ATCC 15703 | ||
| Bifidobacterium angulatum DSM 20098 | ||
| Bifidobacterium animalis subsp. lactis AD011 | ||
| Bifidobacterium bifidum NCIMB 41171 | 10 | 5 |
| Bifidobacterium breve DSM 20213 | 11 | 6 |
| Bifidobacterium dentium Bd1 | ||
| Bifidobacterium gallicum DSM 20093 | ||
| Bifidobacterium longum NCC2705 | 11 | 4 |
| Gardnerella vaginalis 409-05 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| lnbA |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -95 score = 4.94539 sequence = AATTGTTAGTTGGGTTGACAATA Site: position = -175 score = 3.99586 sequence = GTGAGTTAATGAAATGAACAAAC Gene: Blon_2177: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein |
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Bifidobacterium bifidum NCIMB 41171 Site: position = -101 score = 4.71854 sequence = AAATGTTAATGTAGTTGACATTT Gene: BbifN4_010100004949: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein |
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Bifidobacterium breve DSM 20213 Site: position = -96 score = 5.201 sequence = AATTGTTAGTTAGGTTGACAATA Site: position = -184 score = 4.5779 sequence = CTTTGTAAGGAGTATTAATAAAA Gene: BIFBRE_00332: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein |
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Bifidobacterium longum NCC2705 Site: position = -95 score = 5.175 sequence = AATTGTTAGCTAAGTTGACAATA Gene: BL1638: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein |
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein |
| lnbB |
Gene: Blon_2176: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 |
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Gene: BbifN4_010100004944: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 |
Gene: BIFBRE_00333: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 |
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Gene: BL1639: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 |
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1 |
| lnbC |
Gene: Blon_2175: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
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Gene: BbifN4_010100004939: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
Gene: BIFBRE_00334: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
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Gene: BL1640: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
| lnpA |
*
Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -31 score = 4.11728 sequence = TTTTGATGATCAACCTCACAAAG Gene: Blon_2174: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211) |
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Gene: BIFBRE_00335: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211) |
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Gene: BL1641: 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211) |
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1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC:2.4.1.211) |
| nahK |
Gene: Blon_2173: N-acetylhexosamine 1-kinase (EC:2.7.1.162) |
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Bifidobacterium bifidum NCIMB 41171 Site: position = -144 score = 4.9176 sequence = TTATGTAACTATAATTAACAAAT Gene: BbifN4_010100004904: N-acetylhexosamine 1-kinase (EC:2.7.1.162) |
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Bifidobacterium breve DSM 20213 Site: position = -69 score = 4.78152 sequence = TTATGTATATATACTTAACAAAT Gene: BIFBRE_00337: N-acetylhexosamine 1-kinase (EC:2.7.1.162) |
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Gene: BL1642: N-acetylhexosamine 1-kinase (EC:2.7.1.162) |
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N-acetylhexosamine 1-kinase (EC:2.7.1.162) |
| galT2 |
Gene: Blon_2172: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12) |
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Gene: BbifN4_010100004899: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12) |
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Bifidobacterium breve DSM 20213 Site: position = -40 score = 5.91668 sequence = AATTGTTAGGGTAATTAACAATA Gene: BIFBRE_00635: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12) |
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Gene: BL1643: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12) |
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UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12) |
| galE2 |
Gene: Blon_2171: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Gene: BbifN4_010100004894: UDP-glucose 4-epimerase (EC 5.1.3.2) |
Gene: BIFBRE_00338: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Gene: BL1644: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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UDP-glucose 4-epimerase (EC 5.1.3.2) |
| CRON 2. | |||||||||||
| nagB |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -169 score = 6.51124 sequence = AATTGTTAGTATCATTAACAAAT Site: position = -251 score = 5.54749 sequence = AATTGTTATGAAACTTCACCAAT Gene: Blon_0881: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Bifidobacterium bifidum NCIMB 41171 Site: position = -135 score = 6.33079 sequence = ATTAGTTAGTATCATTAACAAAT Gene: BbifN4_010100002384: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Bifidobacterium breve DSM 20213 Site: position = -180 score = 5.46527 sequence = ATCTGTTAGGGAACTTCACTAAT Site: position = -100 score = 6.02054 sequence = AATTGTAAGTAGTATTAACAAAT Gene: BIFBRE_01706: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Bifidobacterium longum NCC2705 Site: position = -251 score = 5.25986 sequence = AACTGTTATGAAACTTCACTAAT Site: position = -169 score = 6.51124 sequence = AATTGTTAGTATCATTAACAAAT Gene: BL1343: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| nagA |
Gene: Blon_0882: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: BbifN4_010100002389: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: BIFBRE_01705: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: BL1344: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| CRON 3. | |||||||||||
| nagR |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -191 score = 6.51124 sequence = ATTTGTTAATGATACTAACAATT Site: position = -109 score = 5.54749 sequence = ATTGGTGAAGTTTCATAACAATT Gene: Blon_0880: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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*2
Bifidobacterium bifidum NCIMB 41171 Site: position = -138 score = 6.33079 sequence = ATTTGTTAATGATACTAACTAAT Gene: BbifN4_010100002379: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family Site: position = -168 score = 4.9176 sequence = ATTTGTTAATTATAGTTACATAA Gene: BbifN4_010100004909: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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Bifidobacterium breve DSM 20213 Site: position = -116 score = 5.46527 sequence = ATTAGTGAAGTTCCCTAACAGAT Site: position = -196 score = 6.02054 sequence = ATTTGTTAATACTACTTACAATT Gene: BIFBRE_01707: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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Bifidobacterium longum NCC2705 Site: position = -109 score = 5.25986 sequence = ATTAGTGAAGTTTCATAACAGTT Site: position = -191 score = 6.51124 sequence = ATTTGTTAATGATACTAACAATT Gene: BL1342: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
| CRON 4. | |||||||||||
| nagK |
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Bifidobacterium longum subsp. infantis ATCC 15697 Site: position = -78 score = 5.34483 sequence = ATTTGTTAAGATAGTTGTCAATA Gene: Blon_0879: Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59) |
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Bifidobacterium breve DSM 20213 Site: position = -78 score = 5.34483 sequence = ATTTGTTAAGATAGTTGTCAATA Gene: BIFBRE_01708: Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59) |
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Bifidobacterium longum NCC2705 Site: position = -78 score = 5.13242 sequence = ATTTGTTAAGATGGTTGTCAATA Gene: BL1341: Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59) |
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Predicted N-acetyl-glucosamine kinase, ROK family (EC 2.7.1.59) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |