Regulon of NagR in Bifidobacterium bifidum NCIMB 41171
| Regulator type: | Transcription factor |
| TF locus tag: | BbifN4_010100002379, BbifN4_010100004909 |
| Regulator family: | ROK |
| Regulation mode: | |
| Biological process: | Lacto-N-biose utilization; Galacto-N-biose utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Regulog: | NagR - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - Lacto-N-biose utilization
- By pathway - Galacto-N-biose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -168
Score: 4.9 Sequence: ATTTGTTAATTATAGTTACATAA
Locus tag: BbifN4_010100004909
Name: nagR Funciton: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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nagR
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Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family
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Position: -101
Score: 4.7 Sequence: AAATGTTAATGTAGTTGACATTT
Locus tag: BbifN4_010100004949
Name: lnbA Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein
Locus tag: BbifN4_010100004944
Name: lnbB Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1
Locus tag: BbifN4_010100004939
Name: lnbC Funciton: Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2 |
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lnbA
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, substrate-binding protein
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lnbB
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 1
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lnbC
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Predicted galacto-N-biose-/lacto-N-biose ABC transporter, permease component 2
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Position: -135
Score: 6.3 Sequence: ATTAGTTAGTATCATTAACAAAT
Locus tag: BbifN4_010100002384
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: BbifN4_010100002389
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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Position: -138
Score: 6.3 Sequence: ATTTGTTAATGATACTAACTAAT
Locus tag: BbifN4_010100002379
Name: nagR Funciton: Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family |
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nagR
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Transciptional regulator of lacto-N-biose and galacto-N-biose utilization, ROK family
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Position: -144
Score: 4.9 Sequence: TTATGTAACTATAATTAACAAAT
Locus tag: BbifN4_010100004904
Name: nahK Funciton: N-acetylhexosamine 1-kinase (EC:2.7.1.162)
Locus tag: BbifN4_010100004899
Name: galT2 Funciton: UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Locus tag: BbifN4_010100004894
Name: galE2 Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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nahK
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N-acetylhexosamine 1-kinase (EC:2.7.1.162)
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galT2
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UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12)
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galE2
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UDP-glucose 4-epimerase (EC 5.1.3.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |