Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Shewanella piezotolerans WP3

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella piezotolerans WP3
Orthologous TF(s) swp_0755
Regulated genes 195
Built upon 2713 sites [see more]
Predicted regulatory interactions in Shewanella piezotolerans WP3
Locus tag Position Score Sequence
Position: -127
Score: 4.4
Sequence: TTATGTGATTAGTCGCACACTG
Locus tag: swp_0035
swp_0035 -127 4.4 TTATGTGATTAGTCGCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewanella oneidensis MR-1 SO0021 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp W3-18-1 Sputw3181_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp ANA-3 Shewana3_0024 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-4 Shewmr4_0018 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-7 Shewmr7_0016 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella baltica OS155 Sbal_0021 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella amazonensis SB2B Sama_0032 -193 3.8 TGCTGTGCAGTGTATCACAAAG
Shewanella pealeana ATCC 700345 Spea_0018 -134 4.6 TTTTGTGATTCGTCGCACACTG
Shewanella halifaxensis HAW-EB4 Shal_0016 -134 4.4 TTTTGTGATTAGTCGCACACTG
Shewanella piezotolerans WP3 swp_0035 -127 4.4 TTATGTGATTAGTCGCACACTG
Position: -177
Score: 4.2
Sequence: ATTTGTGAGCTAGCTTGTATTT
Locus tag: swp_0132
swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1 SO0096 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0078 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3999 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0099 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0098 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0093 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4253 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3758 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4170 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0072 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4839 -201 4.1 AAGTGTGATCCAACTTGTATTT
Position: -63
Score: 3.7
Sequence: AAAAGTGACAGGATTCTCTAAT
Locus tag: swp_0136
swp_0136 -63 3.7 AAAAGTGACAGGATTCTCTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutH
Ortholog function: histidine ammonia-lyase (EC 4.3.1.3)
Shewanella oneidensis MR-1 SO0098 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0080 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3997 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0101 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0100 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0095 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4251 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3756 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4168 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0074 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0134 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4446 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4837 -201 4.1 AAGTGTGATCCAACTTGTATTT
Position: -156
Score: 4
Sequence: ATTCGTGACCTAGATTAGACTT
Locus tag: swp_0168
swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1 SO0141 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32 Sputcn32_0133 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1 Sputw3181_3939 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3 Shewana3_0133 -163 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4 Shewmr4_0134 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7 Shewmr7_0128 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4220 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4221 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4 Shew_0041 -55 4 TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3 swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3 Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4765 -240 4 AATCGTGACTTAGATTAGACTT
Position: -113
Score: 4.9
Sequence: TTTTTTGATCTAGTCCACATAT
Locus tag: swp_0182
swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: 27
Score: 5.1
Sequence: AACTGTGATCTTGCTCACAGTT
Locus tag: swp_0262
swp_0262 27 5.1 AACTGTGATCTTGCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3921
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345 Spea_3921 -41 4.4 AACTGTGACAAAGATCACTATT
Shewanella halifaxensis HAW-EB4 Shal_0348 -42 5 AAGTGTGACGCAGATCACCATT
Shewanella sediminis HAW-EB3 Ssed_0288 -42 5 TCTTGTGATACAGGTCACATTA
Shewanella woodyi ATCC 51908 Swoo_3910 -48 5.2 AAGTGTGACTTAGATCACACAA
Position: -127
Score: 3.9
Sequence: AAAGTTGTCATAGATCACATTT
Locus tag: swp_0315
swp_0315 -127 3.9 AAAGTTGTCATAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0355
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO0355 -84 4.4 TTATTTGCGCTACATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3634 -84 3.8 CTATTTGCGCAGCATCACAAAA
-45 3.9 TAAAGTGATGGGGTAAAAATAA
Shewanella sp W3-18-1 Sputw3181_3774 -84 3.8 CTATTTGCGCAGCATCACAAAA
-45 3.9 TAAAGTGATGGGGTAAAAATAA
Shewanella baltica OS155 Sbal_0351 -73 3.8 CTATTTGCGCGGGCTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0361 -51 4.3 TTGTGTTACCTAGCACACATAT
Shewanella pealeana ATCC 700345 Spea_3882 -124 4.3 AAGTTTGTCTTAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_0387 -124 4.3 AAGTTTGTCTTAGATCACATTT
Shewanella piezotolerans WP3 swp_0315 -127 3.9 AAAGTTGTCATAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0331 -110 3.9 GAATTTGTCATAGATCACATTT
Position: -77
Score: 4.6
Sequence: TATAGTGATCTCAATCACAGCT
Locus tag: swp_0358
swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO4349 -86 4 TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32 Sputcn32_3615 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1 Sputw3181_3755 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3 Shewana3_0355 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-4 Shewmr4_0361 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-7 Shewmr7_3665 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella baltica OS155 Sbal_4032 -85 4.3 TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400 Sfri_0421 -85 4.1 TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4 Shew_0288 -126 3.7 CAATGTGACGTTTCGAATATAT
-77 3.8 ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3 swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3 Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908 Swoo_0441 -78 3.5 TATAGTGAATTCAATCACTGCT
Position: -40
Score: 4.3
Sequence: AAATGTAATCCGTATCGCAACA
Locus tag: swp_0402
swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1 SO4313 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3587 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3726 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0386 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0388 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3638 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4000 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0388 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0440 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0318 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0373 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3917 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0483 -229 4.6 AAATGAGACCAAGATCACACTT
Position: -106
Score: 5.5
Sequence: AAATGTGATCGGAGTCACATTT
Locus tag: swp_0403
swp_0403 -106 5.5 AAATGTGATCGGAGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO4312 -91 5 AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3586 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1 Sputw3181_3725 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3 Shewana3_0387 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4 Shewmr4_0389 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7 Shewmr7_3637 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_0441 -129 3.8 AAATGCTACGATGATCACCATT
-100 3.9 AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B Sama_3253 -90 5.4 AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4 Shew_0319 -88 5.1 AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345 Spea_0374 -87 5.3 AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3916 -88 5.3 AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3 swp_0403 -106 5.5 AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_4132 -90 5.2 AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908 Swoo_0484 -98 5 AAGTGTGATCTTGGTCTCATTT
Position: -286
Score: 4.5
Sequence: AATCGTGACTTTGCTCACCCTA
Locus tag: swp_0427
swp_0427 -286 4.5 AATCGTGACTTTGCTCACCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prmA
Ortholog function: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Shewanella loihica PV-4 Shew_0331 -274 3.8 AAGCGTGAGACACCTCACCCTG
-242 4.1 ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345 Spea_0391 -283 4.3 TTTCGTGAAGGAACTCACCCTT
-251 4.1 CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_3900 -281 3.9 TTTCGTGATCAGTGTCACTACA
-249 3.7 CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3 swp_0427 -286 4.5 AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3 Ssed_4117 -53 5 TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0506 -233 4.5 TTTTTTGAACCACATCACAAAC
Position: -106
Score: 3.8
Sequence: TAGGGTGAGCAAAGTCACGATT
Locus tag: swp_0428
swp_0428 -106 3.8 TAGGGTGAGCAAAGTCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0396 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3441 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0498 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0401 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3623 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3937 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B Sama_3222 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345 Spea_0392 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3899 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0428 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4116 -126 4.5 GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908 Swoo_0507 -138 4.8 GTTTGTGATGTGGTTCAAAAAA
Position: -94
Score: 3.9
Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0429
swp_0429 -94 3.9 TTTGTTGATCTATCTCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdrC
Ortholog function: fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0397 -79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella oneidensis MR-1 SO0397 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3440 -67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella putrefaciens CN-32 Sputcn32_3440 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0499 -67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0499 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0402 -77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp ANA-3 Shewana3_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0403 -77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0403 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3622 -76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3622 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3936 -105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella baltica OS155 Sbal_3936 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella amazonensis SB2B Sama_3221 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella loihica PV-4 Shew_0333 -98 4.4 TGTTTTGATCTATCTCACGGTT
Shewanella loihica PV-4 Shew_0333 -98 4.4 TGTTTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345 Spea_0393 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella pealeana ATCC 700345 Spea_0393 -94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3898 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3898 -94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0429 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella piezotolerans WP3 swp_0429 -94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4115 -104 4.4 TGTTTTGATCTGCCTCACGGTT
-74 3.9 ATATGTGAGCGACATTATGATT
Shewanella sediminis HAW-EB3 Ssed_4115 -104 4.4 TGTTTTGATCTGCCTCACGGTT
-74 3.9 ATATGTGAGCGACATTATGATT
Shewanella woodyi ATCC 51908 Swoo_0508 -109 4.7 TGATTTGATCTGTCTCACAGTA
-79 4 ATTTGTGAGCGACATTATCTAA
Shewanella woodyi ATCC 51908 Swoo_0508 -109 4.7 TGATTTGATCTGTCTCACAGTA
-79 4 ATTTGTGAGCGACATTATCTAA
Position: -181
Score: 3.8
Sequence: TATAGCGATAAAGTTAAAATTT
Locus tag: swp_0481
swp_0481 -181 3.8 TATAGCGATAAAGTTAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4118
Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40)
Shewanella oneidensis MR-1 SO4118 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0554 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3618 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3669 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3492 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0460 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3353 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3757 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3774 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3859 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella piezotolerans WP3 swp_0481 -181 3.8 TATAGCGATAAAGTTAAAATTT
Shewanella woodyi ATCC 51908 Swoo_4423 -345 3.8 AAGTTTTATCTAGTTAACCCTT
Position: -156
Score: 4.6
Sequence: TTTTGTTACACAGATCGCATAT
Locus tag: swp_0532
swp_0532 -156 4.6 TTTTGTTACACAGATCGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0543
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO0543 -192 3.7 CGTTATGCGCTAAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3331 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp W3-18-1 Sputw3181_0610 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp ANA-3 Shewana3_0541 -193 4.1 AGTTATGCGCTAAATCACAAAA
Shewanella sp MR-4 Shewmr4_0542 -192 4 AGTTATGCGCTTAATCACAAAA
Shewanella sp MR-7 Shewmr7_3488 -191 4 AGTTATGCGCTTAATCACAAAA
Shewanella baltica OS155 Sbal_0501 -201 4.8 TGTTGTGCTCTCAATCACAAAA
-88 3.9 AATTTTACCCTGATTCACAAAA
Shewanella denitrificans OS217 Sden_0657 -34 3.9 TAATATGACTAGAGTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_3534 -200 4 ATATTTGATCACAAGCACACTC
Shewanella amazonensis SB2B Sama_3164 -240 3.9 CATTGTTACTCACTTCATACAT
-126 3.9 ATTTATGACCATACTCACAGAG
Shewanella loihica PV-4 Shew_0428 -190 4.2 TAGTGTTAACTCGATCAAACAA
Shewanella pealeana ATCC 700345 Spea_3733 -197 4.2 TTTTGCTACATAGATCGCATAT
Shewanella halifaxensis HAW-EB4 Shal_3818 -235 4.7 TTTTGTTACATGGATCGCATAT
Shewanella piezotolerans WP3 swp_0532 -156 4.6 TTTTGTTACACAGATCGCATAT
Shewanella sediminis HAW-EB3 Ssed_0598 -213 4.2 TAATGTTAAATCGATCTCACTT
Shewanella woodyi ATCC 51908 Swoo_4355 -215 3.8 AATTGCTAGATAGATCTCACTT
Position: -110
Score: 3.6
Sequence: TTTATTGACGATAGTCAAAAAA
Locus tag: swp_0563
swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1 SO0572 -102 4.4 TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_3304 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1 Sputw3181_0637 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3 Shewana3_0572 -102 4.4 TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4 Shewmr4_0573 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7 Shewmr7_3457 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155 Sbal_0533 -102 4.3 TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217 Sden_0534 -100 3.7 ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_3510 -237 4.2 CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4 Shew_0454 -124 4.3 TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3709 -110 3.7 AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4 Shal_3794 -110 3.9 TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3 swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_0623 -108 4.1 TTTTTTGACTGAAGTCAAACTT
Position: -100
Score: 5.7
Sequence: TTTTGTGATCTGCCTCACAAAT
Locus tag: swp_0564
swp_0564 -100 5.7 TTTTGTGATCTGCCTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_3134
Ortholog function: membrane protein
Shewanella loihica PV-4 Shew_0455 -94 4.9 CAATGTGATCTGCTTCACACTC
Shewanella pealeana ATCC 700345 Spea_3708 -85 4.7 AAGTGTGACCAGGTTCACGAAT
Shewanella halifaxensis HAW-EB4 Shal_3793 -156 4.9 AAGCGTGATCTGGTTCACGAAT
Shewanella piezotolerans WP3 swp_0564 -100 5.7 TTTTGTGATCTGCCTCACAAAT
Position: -105
Score: 4.1
Sequence: TTCTGCGACTTACTTCAAATAA
Locus tag: swp_0644
swp_0644 -105 4.1 TTCTGCGACTTACTTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: modE
Ortholog function: molybdate-binding domain of ModE
Shewanella pealeana ATCC 700345 Spea_3636 -143 4.4 AAACATGATCCAGTTCACAACA
-102 4 AAATGTGACTCAACCCAAGATA
Shewanella halifaxensis HAW-EB4 Shal_3720 -102 4.3 AAATGCGACCTAATTCAAGTAA
Shewanella piezotolerans WP3 swp_0644 -105 4.1 TTCTGCGACTTACTTCAAATAA
Position: -267
Score: 3.7
Sequence: TTACTTGCTCTAGATAACTTTT
Position: -140
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Locus tag: swp_0747
swp_0747 -267 3.7 TTACTTGCTCTAGATAACTTTT
-140 4.1 AACTGGTATTTTGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO0617 -142 4 AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_0645 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1 Sputw3181_3529 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3 Shewana3_0610 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-4 Shewmr4_0611 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-7 Shewmr7_3419 -308 3.8 AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155 Sbal_0571 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217 Sden_3193 -136 4.1 AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3299 -137 4.1 AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B Sama_3011 -142 4 AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4 Shew_0578 -140 3.8 AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_3516 -138 4.1 AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_3610 -138 3.7 AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3 swp_0747 -140 4.1 AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0809 -141 4.1 AACTGGTATTTTGATCACATTT
-121 3.9 TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908 Swoo_0655 -172 4.3 ATATGTGCTGCTGATCTTATTT
Position: -309
Score: 4.2
Sequence: TTTATTGATAAGGTTCAAAAAA
Locus tag: swp_0755
swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: -153
Score: 3.8
Sequence: TTTTTTGAACCTTATCAATAAA
Locus tag: swp_0756
swp_0756 -153 3.8 TTTTTTGAACCTTATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sel1
Ortholog function: Sel1 domain protein repeat-containing protein precursor
Shewanella oneidensis MR-1 SO0625 -267 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella putrefaciens CN-32 Sputcn32_0653 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp W3-18-1 Sputw3181_3521 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp ANA-3 Shewana3_0618 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-4 Shewmr4_0619 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-7 Shewmr7_3411 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella baltica OS155 Sbal_0579 -278 4.4 TTTAGTGATTTAAGTCAACTAA
Shewanella frigidimarina NCIMB 400 Sfri_3291 -222 4.1 AACTTTGATAGAGATCGTATTT
-147 4.3 ATTTGTGATGACGGTCGACTTT
-38 4 TTATTTAATCAGCTTCATAAAT
Shewanella amazonensis SB2B Sama_3003 -319 3.8 AACCATGATGCAGATCGAAATT
Shewanella loihica PV-4 Shew_0586 -279 3.8 ATTAGTAATATATGTCAACTAA
Shewanella piezotolerans WP3 swp_0756 -153 3.8 TTTTTTGAACCTTATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_3872 -296 4.3 ATTAGTGATATAAGTCAACTAA
Shewanella woodyi ATCC 51908 Swoo_0663 -298 4.3 ATTAGTGATATAAGTCAACTAA
Position: -131
Score: 4.2
Sequence: AACTATGATCTGGTTCTAATTT
Position: -102
Score: 3.9
Sequence: TAATGAGCCCCGCCTCAAATTT
Locus tag: swp_0793
swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
-102 3.9 TAATGAGCCCCGCCTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -137
Score: 3.9
Sequence: AAAGGTGTCGCTCGTCACATTT
Locus tag: swp_0809
swp_0809 -137 3.9 AAAGGTGTCGCTCGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3774
Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO3774 -146 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella putrefaciens CN-32 Sputcn32_3099 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp W3-18-1 Sputw3181_0845 -128 3.8 GATAGTGTTGTCCGTCACATTT
Shewanella sp ANA-3 Shewana3_0819 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-4 Shewmr4_3122 -132 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella sp MR-7 Shewmr7_0850 -131 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella baltica OS155 Sbal_3458 -128 4.4 TATAGTGTTGTCCGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0568 -172 3.8 TTCAGTGAACAAAATCAAACAA
-131 4.1 TTGAGTGTCCAAGTTCACATTT
Shewanella loihica PV-4 Shew_0615 -146 3.9 AAGAGTGTCCCTCGTCACATTT
Shewanella pealeana ATCC 700345 Spea_3490 -127 3.9 ATTATTGCCACTCATCACATTT
Shewanella piezotolerans WP3 swp_0809 -137 3.9 AAAGGTGTCGCTCGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_3846 -162 4 AATGGTGTCCCTCGTCACATTT
Shewanella woodyi ATCC 51908 Swoo_0714 -176 3.9 AAGAGTGTCCCTCGTCACATTT
Position: -113
Score: 4
Sequence: GAAGTTGATCTTGCTCACAAAA
Locus tag: swp_1052
swp_1052 -113 4 GAAGTTGATCTTGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3683
Ortholog function: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Shewanella putrefaciens CN-32 Sputcn32_2982 -168 4.3 AGCCGTGATCTTGCTCAAAAAT
Shewanella sp W3-18-1 Sputw3181_0965 -168 4.3 AGCCGTGATCTTGCTCAAAAAT
Shewanella baltica OS155 Sbal_3332 -189 4.2 AGCCGTGATATTGCTCAAAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0937 -146 3.9 CTTAGTGATCAAAATCAAATCA
Shewanella amazonensis SB2B Sama_2855 -106 4.4 ACTCGTGATCCAGATCAAGTTT
Shewanella loihica PV-4 Shew_3103 -201 4.2 CCACTTGATCCAGATCACATTT
Shewanella pealeana ATCC 700345 Spea_3357 -113 4.6 GAGTTTGATCTAGCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_3429 -113 4.4 GAATTTGATCTCAGTCACAATT
Shewanella piezotolerans WP3 swp_1052 -113 4 GAAGTTGATCTTGCTCACAAAA
Position: -79
Score: 4.3
Sequence: TTTTGTGAGCAAGATCAACTTC
Locus tag: swp_1054
swp_1054 -79 4.3 TTTTGTGAGCAAGATCAACTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3682 -109 3.8 TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32 Sputcn32_2981 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1 Sputw3181_0966 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4 Shewmr4_0873 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7 Shewmr7_3149 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155 Sbal_3331 -76 3.7 ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B Sama_2854 -78 4 AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4 Shew_3102 -84 4.2 AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345 Spea_3356 -102 4.7 AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4 Shal_3428 -90 4.8 AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3 swp_1054 -79 4.3 TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3 Ssed_3715 -111 4.2 CAGTGTGATCTCGATCAACTTC
Position: -105
Score: 4.5
Sequence: AAAGGTGAACTAGATCACAAAG
Locus tag: swp_1085
swp_1085 -105 4.5 AAAGGTGAACTAGATCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_1222
Ortholog function: hypothetical protein
Shewanella loihica PV-4 Shew_1222 -66 5 TAGTGTGATGCAGCTCTCAATA
Shewanella pealeana ATCC 700345 Spea_3260 -217 3.7 TTCAGTGATTTATATCGCCACT
-121 4.4 AAAGGTGAGCTCGATCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3336 -216 4.5 TTAAGTGATTTGTATCGCCATA
-119 4.8 AATAGTGAGGTGGGTCACAAAT
Shewanella piezotolerans WP3 swp_1085 -105 4.5 AAAGGTGAACTAGATCACAAAG
Shewanella sediminis HAW-EB3 Ssed_1323 -145 5.1 AAAGGTGATCGATATCACATAT
Shewanella woodyi ATCC 51908 Swoo_3332 -69 4 GAAGGTGATTAATATCACGTTA
Position: -132
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: swp_1167
swp_1167 -132 4.3 CAGCGTGATTGCGATCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1 SO1103 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_0940 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1 Sputw3181_3236 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3 Shewana3_0938 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4 Shewmr4_0936 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7 Shewmr7_0974 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155 Sbal_0924 -128 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217 Sden_0982 -128 4.3 CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0949 -127 4.3 CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B Sama_2539 -127 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4 Shew_2881 -131 4.3 CAGCGTGATTGCGATCGCATTT
-73 4.1 ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345 Spea_3103 -133 4.4 CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3187 -127 3.7 CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3 swp_1167 -132 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3 Ssed_3431 -130 4.1 CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908 Swoo_3617 -46 4 CAGCGTGATTGCGGTCGCAAAT
Position: -139
Score: 4.8
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: swp_1230
swp_1230 -139 4.8 AAGTGTGATCTAAATCTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1 SO1218 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32 Sputcn32_2821 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1 Sputw3181_1190 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3 Shewana3_1042 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4 Shewmr4_1038 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7 Shewmr7_1103 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155 Sbal_3226 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B Sama_0974 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4 Shew_2814 -133 4 AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345 Spea_3047 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4 Shal_3135 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3 swp_1230 -139 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3 Ssed_3377 -134 4 AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908 Swoo_3548 -157 4.2 AAGTGTGATCTAAATCTAGTTG
Position: -191
Score: 4.4
Sequence: AACTGTGAAACAACTCACAAAG
Locus tag: swp_1238
swp_1238 -191 4.4 AACTGTGAAACAACTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: polysulfide reductase, subunit A
Shewanella sp ANA-3 Shewana3_3619 -278 3.8 TCTATTGATCCTATTCACGAAT
Shewanella sp MR-4 Shewmr4_3444 -273 4 CTTATTGATCTTATTCACGATT
Shewanella sp MR-7 Shewmr7_0507 -273 4 CTTATTGATCTTATTCACGATT
Shewanella frigidimarina NCIMB 400 Sfri_1999 -181 3.8 AACCGTGACATCAATCAAATCA
Shewanella pealeana ATCC 700345 Spea_3039 -182 4.4 AACTGTGAATTGCCTCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3127 -183 4.5 AACTGTGAATTGCTTCACAAAC
Shewanella piezotolerans WP3 swp_1238 -191 4.4 AACTGTGAAACAACTCACAAAG
Shewanella sediminis HAW-EB3 Ssed_4047 -228 3.9 ACATTAGATAAATATCACATTT
Position: -336
Score: 3.7
Sequence: TTGATTGATTTGAATCAATTTT
Position: -231
Score: 4.2
Sequence: AGGTGAGACGGTGATCACAATA
Locus tag: swp_1469
swp_1469 -336 3.7 TTGATTGATTTGAATCAATTTT
-231 4.2 AGGTGAGACGGTGATCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA
Shewanella oneidensis MR-1 SO3286 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp W3-18-1 Sputw3181_1366 -204 4.3 TAGTGTGACGCTTGTCCCAATA
Shewanella sp ANA-3 Shewana3_1241 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-4 Shewmr4_1239 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella sp MR-7 Shewmr7_1310 -203 4.2 TAGTGTGACTAGGGTCTCAGTA
Shewanella baltica OS155 Sbal_2979 -207 4.4 TAGTGTGACTCGCGTCTCAATA
Shewanella denitrificans OS217 Sden_1274 -157 4.1 TAAATTGATCTAAATCAATTTA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -240 4.2 AAATCTAATGCTGGTCACATAA
Shewanella loihica PV-4 Shew_1302 -206 4.7 TTTTGTGAGCCGCCTCTCAAAA
Shewanella pealeana ATCC 700345 Spea_1318 -235 4 ATTCGGGATGGGTGTCACAAAG
Shewanella halifaxensis HAW-EB4 Shal_1381 -234 4.1 ATTTGGGATGAGTATCACGGAA
Shewanella piezotolerans WP3 swp_1469 -231 4.2 AGGTGAGACGGTGATCACAATA
Shewanella sediminis HAW-EB3 Ssed_3118 -203 4 TAGTGTGAAGTTCGTCGTAAAA
Shewanella woodyi ATCC 51908 Swoo_1565 -204 3.8 TTTTGTGAGATCGGTCGGAAAG
Position: -204
Score: 3.9
Sequence: TTTTGTTATGACGGTTGCATTT
Locus tag: swp_1592
swp_1592 -204 3.9 TTTTGTTATGACGGTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysC
Ortholog function: adenylylsulfate kinase (EC 2.7.1.25)
Shewanella sp ANA-3 Shewana3_0866 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella sp MR-4 Shewmr4_3069 -248 4.2 TTATGTGAGGTGACGCAAGTTT
Shewanella sp MR-7 Shewmr7_0903 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_3184 -37 4.2 ATATTTGAACATGGTCAAATAT
-7 4.1 AAATGTGATGGAGTTAGTATCT
Shewanella pealeana ATCC 700345 Spea_0666 -148 4.1 CAATGTGTTGCATGGCACATAA
Shewanella piezotolerans WP3 swp_4055 -119 4.3 TTTTATGATATGCATCACCTCA
Shewanella piezotolerans WP3 swp_1592 -204 3.9 TTTTGTTATGACGGTTGCATTT
Shewanella woodyi ATCC 51908 Swoo_1689 -66 4.2 TAAAGTGATGAATCTTAAATTT
Position: -76
Score: 5
Sequence: AACTGTGATCTGGTTAACAAAA
Locus tag: swp_1650
swp_1650 -76 5 AACTGTGATCTGGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO1666 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_1386 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_2715 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3 Shewana3_2781 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4 Shewmr4_2607 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7 Shewmr7_2674 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155 Sbal_1484 -75 4.7 AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217 Sden_2595 -61 4.1 AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -74 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B Sama_2222 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4 Shew_1435 -40 4.7 AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345 Spea_1448 -126 4.9 AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4 Shal_1531 -86 4.7 AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3 swp_1650 -76 5 AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_2930 -75 4.8 AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_1715 -74 4.7 AAGTGTGAAGTGGTTAACAAAA
Position: -140
Score: 5
Sequence: TAGTGTGATTTAGCTCACGCTA
Locus tag: swp_1653
swp_1653 -140 5 TAGTGTGATTTAGCTCACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fahA
Ortholog function: Fumarylacetoacetate hydrolase family protein
Shewanella oneidensis MR-1 SO1670 -200 5.1 AAATGTGATTTTGTTCACGCTA
Shewanella putrefaciens CN-32 Sputcn32_1389 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp W3-18-1 Sputw3181_2712 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp ANA-3 Shewana3_2778 -197 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-4 Shewmr4_2604 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-7 Shewmr7_2671 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella baltica OS155 Sbal_1487 -235 5 AAATGTGATTTTGGTCACGCTA
Shewanella denitrificans OS217 Sden_2592 -107 4.7 AAATGTGATTTTGCGCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_1331 -116 4.1 AAATGTGATTTGGTACTTACTA
Shewanella amazonensis SB2B Sama_2219 -111 5 AATTGTGATTTGAGTCACGCTA
Shewanella loihica PV-4 Shew_1438 -130 4.4 GAGTGTGATTTGTATCACGCTA
Shewanella pealeana ATCC 700345 Spea_1451 -158 5.3 AAGTGTGATTTCGTTCACACTA
Shewanella halifaxensis HAW-EB4 Shal_1534 -144 4.5 CAGTGTGATTTATCTCACGCTA
Shewanella piezotolerans WP3 swp_1653 -140 5 TAGTGTGATTTAGCTCACGCTA
Shewanella sediminis HAW-EB3 Ssed_2927 -116 4.1 GAGCGTGATTCATGTCACACTA
Shewanella woodyi ATCC 51908 Swoo_1718 -133 5 TATTGTGATTTGTGTCACGCTA
Position: -185
Score: 3.7
Sequence: AAACGCGATTTAAGTCACTTTC
Position: -70
Score: 3.7
Sequence: TTGTTTGATTATAAAAACAAAA
Locus tag: swp_1670
swp_1670 -185 3.7 AAACGCGATTTAAGTCACTTTC
-70 3.7 TTGTTTGATTATAAAAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3120
Ortholog function: oxidoreductase, Gfo/Idh/MocA family
Shewanella oneidensis MR-1 SO3120 -186 4.3 AAACGCGATCTTTATCACTATT
Shewanella putrefaciens CN-32 Sputcn32_2490 -173 4.3 AAACGCGATCTTTATCACTATT
Shewanella sp W3-18-1 Sputw3181_1518 -173 4.3 AAACGCGATCTTTATCACTATT
Shewanella sp ANA-3 Shewana3_1428 -187 4.3 AAACGCGATCTTTATCACTATT
Shewanella sp MR-4 Shewmr4_1375 -186 4.3 AAACGCGATCTTTATCACTATT
Shewanella sp MR-7 Shewmr7_1440 -186 4.3 AAACGCGATCTTTATCACTATT
Shewanella baltica OS155 Sbal_2793 -202 4.3 AAACGCGATCTTTATCACTATT
Shewanella pealeana ATCC 700345 Spea_1465 -158 4 AAACGCGATATAAATCACTTTC
Shewanella halifaxensis HAW-EB4 Shal_1548 -207 4 AAACGCGATATAAATCACTTTC
Shewanella piezotolerans WP3 swp_1670 -185 3.7 AAACGCGATTTAAGTCACTTTC
Shewanella woodyi ATCC 51908 Swoo_1749 -214 4.2 AAACGCGATCTAAGTCACTTAA
Position: -220
Score: 3.8
Sequence: GAAAGTGACTTAAATCGCGTTT
Locus tag: swp_1671
swp_1671 -220 3.8 GAAAGTGACTTAAATCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3119 -166 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2489 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1 Sputw3181_1519 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3 Shewana3_1429 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4 Shewmr4_1376 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7 Shewmr7_1441 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155 Sbal_2792 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B Sama_2198 -151 4.4 AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345 Spea_1466 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1549 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3 swp_1671 -220 3.8 GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3 Ssed_2897 -173 4.7 TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908 Swoo_1750 -148 4.4 TTAAGTGACTTAGATCGCGTTT
Position: 27
Score: 4.3
Sequence: AACTGTGAAAGGTATCACACAC
Locus tag: swp_1689
swp_1689 27 4.3 AACTGTGAAAGGTATCACACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2806 -95 4.3 TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32 Sputcn32_1554 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1 Sputw3181_2545 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3 Shewana3_2588 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4 Shewmr4_2426 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7 Shewmr7_2496 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155 Sbal_1679 -94 4.2 ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217 Sden_1453 -35 3.9 ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B Sama_1287 -85 4 AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345 Spea_1483 -84 4.4 AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4 Shal_1567 -84 4.7 AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3 swp_1689 27 4.3 AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3 Ssed_2877 -82 4.5 TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908 Swoo_1771 -81 4.6 TATTGTGAAAGTCATCACACAG
Position: -21
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: swp_1711
swp_1711 -21 4.1 AAAATTGATCTAGATCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2010 -70 4.7 TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32 Sputcn32_2305 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1 Sputw3181_1703 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4 Shewmr4_2257 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7 Shewmr7_2329 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155 Sbal_2577 -65 5 TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217 Sden_2384 -81 4.8 AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400 Sfri_2410 -116 4.8 TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B Sama_1307 -51 4.3 TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4 Shew_2238 -48 4.1 AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345 Spea_1505 -51 4.1 AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4 Shal_1587 -80 4 TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3 swp_1711 -21 4.1 AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_2855 -49 4.1 AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1790 -48 4.1 TAAATTGATCTAGATCAATAAA
Position: -100
Score: 4.1
Sequence: CTCTATGATATAGCTCACAGAT
Locus tag: swp_1789
swp_1789 -100 4.1 CTCTATGATATAGCTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2271
Ortholog function: permease of the major facilitator superfamily
Shewanella frigidimarina NCIMB 400 Sfri_2271 -125 4.1 TTTTATGACTTAGGTCAACTTA
Shewanella loihica PV-4 Shew_1497 -123 4.3 TAACTTGAACTGGCTCACGTAA
Shewanella pealeana ATCC 700345 Spea_1591 -100 4.8 ATATTTGATCCAGCTCAAACTT
Shewanella halifaxensis HAW-EB4 Shal_1659 -100 4.3 ATGCTTGATCTAGCTCAAACTT
Shewanella piezotolerans WP3 swp_1789 -100 4.1 CTCTATGATATAGCTCACAGAT
Shewanella sediminis HAW-EB3 Ssed_1826 -165 3.8 CAACTTGATTTCGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2762 -220 4.1 AAACTTGATTTCGCTCAAGTAA
Position: -77
Score: 4.1
Sequence: ATTTGAGAGCAATATCACTTTT
Locus tag: swp_1820
swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1 SO2757 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_1598 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1 Sputw3181_2424 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3 Shewana3_2542 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-4 Shewmr4_2377 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-7 Shewmr7_2449 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella baltica OS155 Sbal_1737 -227 4.2 ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217 Sden_2092 -208 4.3 ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400 Sfri_1454 -191 3.5 TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4 Shew_1515 -230 4 ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4 Shal_1682 -225 3.9 ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3 swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3 Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2742 -155 4 TTTAGTGCTGTTATTTACACTT
Position: -108
Score: 4.7
Sequence: AAAAGTGATATTGCTCTCAAAT
Locus tag: swp_1821
swp_1821 -108 4.7 AAAAGTGATATTGCTCTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32 Sputcn32_1599 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1 Sputw3181_2423 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3 Shewana3_2541 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4 Shewmr4_2376 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7 Shewmr7_2448 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155 Sbal_1738 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217 Sden_2091 -88 4.7 GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B Sama_2094 -115 4.3 TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4 Shew_1516 -105 4.1 AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4 Shal_1683 -108 4.4 AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3 swp_1821 -108 4.7 AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3 Ssed_1848 -106 4.4 AAAGGTGATATTGATCCCAAAT
Position: -248
Score: 3.6
Sequence: TTGTGAGTCCTTAATCACGTTT
Position: -229
Score: 3.5
Sequence: TTTTTTGCATAATTTCACTTAA
Locus tag: swp_1825
swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
-229 3.5 TTTTTTGCATAATTTCACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO2753 -235 4.7 TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32 Sputcn32_1602 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1 Sputw3181_2420 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3 Shewana3_2536 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4 Shewmr4_2373 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7 Shewmr7_2445 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155 Sbal_1741 -233 4.7 AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B Sama_2091 -226 4.7 TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4 Shew_1522 -276 3.5 ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345 Spea_2569 -251 3.9 TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1686 -266 3.6 TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3 swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908 Swoo_2736 -259 3.7 TAGTGTGATCTAGGTTGGGTAA
Position: -143
Score: 4.3
Sequence: ATTTGTGATCCATGTGGCAATT
Locus tag: swp_1858
swp_1858 -143 4.3 ATTTGTGATCCATGTGGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2637
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2066 -139 4 ATTTGTGATCACTGTGGCAATT
Shewanella loihica PV-4 Shew_1556 -132 4.2 AATTGTGATCGGCGTGGCAATT
Shewanella pealeana ATCC 700345 Spea_2542 -138 4.3 ATTTGTGATTTGTCTGGCAATT
Shewanella halifaxensis HAW-EB4 Shal_1712 -140 4.1 ATTTGTGAACTATCTGGCAATT
Shewanella piezotolerans WP3 swp_1858 -143 4.3 ATTTGTGATCCATGTGGCAATT
Shewanella sediminis HAW-EB3 Ssed_1878 -136 4.4 AATTGTGATCTGCGTGGCAATT
Shewanella woodyi ATCC 51908 Swoo_2709 -136 4.4 AATTGTGATCTGTGTGGCAATT
Position: -311
Score: 4
Sequence: AGTTGTTAAGTCGCTCTCAATT
Locus tag: swp_1953
swp_1953 -311 4 AGTTGTTAAGTCGCTCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_1673
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_2377 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella sp W3-18-1 Sputw3181_1632 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_2472 -298 4.1 ACTTGTTATCCAGCTCTCACTT
Shewanella amazonensis SB2B Sama_1499 -278 3.9 CTATGTTAGCTGTGTCGCAAAT
Shewanella loihica PV-4 Shew_2389 -301 4 AGATGTTAACTAGCTCCCAAAT
Shewanella pealeana ATCC 700345 Spea_1673 -311 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella halifaxensis HAW-EB4 Shal_2591 -312 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella piezotolerans WP3 swp_1953 -311 4 AGTTGTTAAGTCGCTCTCAATT
Shewanella sediminis HAW-EB3 Ssed_1709 -311 3.9 AGTTGTTAAGTGGCTCCCAATT
Shewanella woodyi ATCC 51908 Swoo_2882 -310 4.2 AGTTGTTAACTGGATCTCAAAT
Position: -212
Score: 5
Sequence: ATTTGTGATTTAAATCGCGTTA
Position: -112
Score: 3.8
Sequence: ATATTCGAACTACATCAAATTG
Locus tag: swp_2043
swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -231
Score: 4.4
Sequence: CAATTTGATGTAGTTCGAATAT
Position: -131
Score: 4.8
Sequence: TAACGCGATTTAAATCACAAAT
Locus tag: swp_2044
swp_2044 -231 4.4 CAATTTGATGTAGTTCGAATAT
-131 4.8 TAACGCGATTTAAATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1 SO0264 -234 4 CAATTTGATATGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3726 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_0189 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3 Shewana3_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4 Shewmr4_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7 Shewmr7_0227 -234 4 CAATTTGATGTGGTTCCAATAA
-125 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155 Sbal_0229 -228 3.9 CAATATGATGTGGTTCCAATAA
-128 4.5 TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217 Sden_3568 -131 3.8 AGCTGGGAGGCTTATCACAAAA
-109 4.1 AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400 Sfri_0180 -233 3.9 CAATTTGATATGGTTCCAAAAT
-133 4.1 AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B Sama_0246 -225 4 CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4 Shew_0191 -242 3.8 CAATTTGATATGCTTCCAAAAA
-131 4.8 AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345 Spea_0216 -230 4.4 CAATTTGATGTAGTTCGAATAT
-130 4 TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_4103 -230 4.4 CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3 swp_2044 -231 4.4 CAATTTGATGTAGTTCGAATAT
-131 4.8 TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_4286 -145 4.4 AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4658 -256 3.8 CAATTTGATATGCTTCCAAAAA
-144 3.9 TACTTTGATTAAAGTCATAAAA
Position: -106
Score: 4.4
Sequence: TAAAGTGAGGTAGAGCACATTC
Locus tag: swp_2053
swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewanella sp ANA-3 Shewana3_3906 -233 3.7 AATATTGCGTTAGCTCGCATTT
-189 3.7 TATCGCGATTAGTTGCATATAA
Shewanella sp MR-4 Shewmr4_3710 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella sp MR-7 Shewmr7_0235 -228 3.7 AATATTGCGTTAGCTCGCATTT
-184 4.3 TATCGTGATTAGTTGCATATAA
Shewanella loihica PV-4 Shew_0200 -107 4.3 CAAGGTGATATAGAACACATAA
Shewanella halifaxensis HAW-EB4 Shal_4095 -106 5 AAAAGTGATATAGAGCACATTA
Shewanella piezotolerans WP3 swp_2053 -106 4.4 TAAAGTGAGGTAGAGCACATTC
Shewanella sediminis HAW-EB3 Ssed_4278 -111 3.9 CCGAGTGATGTAGAGCACATAA
Shewanella woodyi ATCC 51908 Swoo_0327 -111 4.7 AGAAGTGATGTAGAACACATAA
Position: -120
Score: 4.3
Sequence: ATGAGTGATCTTGTTCATAGTA
Locus tag: swp_2077
swp_2077 -120 4.3 ATGAGTGATCTTGTTCATAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0296
Ortholog function: integral membrane domain protein
Shewanella frigidimarina NCIMB 400 Sfri_0385 -7 4.1 AAGTGTAATGAAATCCACAATA
Shewanella pealeana ATCC 700345 Spea_0248 -118 4.3 ATAGGTGATCTTTATCATAGTA
Shewanella halifaxensis HAW-EB4 Shal_4072 -133 4.3 ATAGGTGATCTTTATCATAGTA
Shewanella piezotolerans WP3 swp_2077 -120 4.3 ATGAGTGATCTTGTTCATAGTA
Position: -96
Score: 4
Sequence: TTTTGTGCGCACCTTCAAACTT
Locus tag: swp_2171
swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1 SO0324 -97 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1 Sputw3181_3804 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3 Shewana3_3845 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4 Shewmr4_3649 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7 Shewmr7_0295 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155 Sbal_4067 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -142 4 TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4 Shew_0259 -96 4.1 TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345 Spea_0303 -96 3.9 TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4 Shal_3986 -96 4 TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3 swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3 Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908 Swoo_0395 -82 3.4 TTCTGTGCGCACCTTCATAGAT
Position: -153
Score: 5
Sequence: ATATGTGATGATAATCAAAATT
Locus tag: swp_2289
swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO2581 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1 Sputw3181_2264 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3 Shewana3_2386 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-4 Shewmr4_2177 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-7 Shewmr7_2254 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella baltica OS155 Sbal_1864 -156 5.1 TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217 Sden_1625 -189 4.1 TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -165 4.7 TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4 Shew_2188 -149 4.9 TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345 Spea_2448 -156 5 TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -155 5 TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3 swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3 Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908 Swoo_2110 -153 5.1 TTATGTGATGATGTTCAAAATT
Position: -97
Score: 3.5
Sequence: AATTGTGACGTAGACCCGCAAA
Locus tag: swp_2312
swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -310
Score: 4.7
Sequence: AAGCGTGACCTGTGTCACACTT
Locus tag: swp_2362
swp_2362 -310 4.7 AAGCGTGACCTGTGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2427
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO2427 -319 5.1 AAGTGTGATTAAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_1940 -318 5.7 TAGTGTGATCTACATCACATAA
-274 4 AAATGTTATTTTATTAACAGAG
Shewanella sp W3-18-1 Sputw3181_2068 -318 4.6 GCGTGTGATCTATATCACATAA
Shewanella sp ANA-3 Shewana3_1958 -320 5.2 AAGTGTGACACACATCACATAT
-276 4.4 AAATGTTATTTTCTTAACAGTT
Shewanella sp MR-4 Shewmr4_1903 -319 5.6 AAATGTGATGTGCGTCACATTT
-275 3.9 AAATGTTATTTTATTAACAGCT
Shewanella sp MR-7 Shewmr7_2075 -319 5.2 AAGTGTGACGTGTGTCACATTT
-275 4.3 AAATGTTATTTTATTAACAGTA
Shewanella baltica OS155 Sbal_2044 -317 5.1 AAGCGTGATCTGTGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -149 5 AAATGTGATGTTGTTCACATGT
-4 4.1 ATTCATGAGTTCAGTCACATTA
Shewanella amazonensis SB2B Sama_1838 -324 3.8 TTAATCGATATGGGTCACAGAA
-301 5.2 AAGTGTGATGCACGTCACAAAA
Shewanella loihica PV-4 Shew_2074 -308 5.1 TTTTGTGATAATGGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1923 -306 5.5 AATTGTGATGCGCGTCACAATT
-199 4.1 ACTTGTGCTGTTTGTCACAATG
Shewanella piezotolerans WP3 swp_2362 -310 4.7 AAGCGTGACCTGTGTCACACTT
Shewanella sediminis HAW-EB3 Ssed_2036 -316 4.6 TTTCGTGACGCGCGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_2565 -321 4.9 TTCTGTGACCTGTGTCACAAAA
Position: -340
Score: 3.8
Sequence: TTCTGTGCGCCATCGCACACAA
Locus tag: swp_2363
swp_2363 -340 3.8 TTCTGTGCGCCATCGCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32 Sputcn32_2101 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1 Sputw3181_1911 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3 Shewana3_2232 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.4 CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4 Shewmr4_2107 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7 Shewmr7_1867 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155 Sbal_2269 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155 Sbal_4555 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400 Sfri_2179 -101 4.6 AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400 Sfri_2098 -213 3.8 AAACGTTAAATCCATTACATTA
-41 3.7 TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B Sama_1837 -96 4.3 AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4 Shal_1924 -95 4 TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3 Ssed_2709 -312 3.8 TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2563 -243 3.8 TTTTATGACTCTATTAATATAA
Position: -105
Score: 4.4
Sequence: TTGTTTGACAGAGATAACATTT
Locus tag: swp_2515
swp_2515 -105 4.4 TTGTTTGACAGAGATAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbE
Ortholog function: thiamin biosynthesis lipoprotein ApbE
Shewanella oneidensis MR-1 SO1418 -91 3.8 ATCTATGAGTTAGCTAACACTT
Shewanella loihica PV-4 Shew_1971 -99 4.9 TATTTTGATCTGCTTAACAAAA
Shewanella pealeana ATCC 700345 Spea_2090 -32 4.4 TTATTTGACACAGTTAACACTA
Shewanella halifaxensis HAW-EB4 Shal_2063 -95 4.4 TTATTTGACGCAGTTAACACAA
Shewanella piezotolerans WP3 swp_2515 -105 4.4 TTGTTTGACAGAGATAACATTT
Shewanella sediminis HAW-EB3 Ssed_2280 -209 4.5 ATATTTGACCCAGTTAACACAT
Position: -119
Score: 4.5
Sequence: AAATGTTATCTCTGTCAAACAA
Locus tag: swp_2516
swp_2516 -119 4.5 AAATGTTATCTCTGTCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1419
Ortholog function: lipoprotein, putative
Shewanella oneidensis MR-1 SO1419 -117 3.9 AAGTGTTAGCTAACTCATAGAT
Shewanella loihica PV-4 Shew_1972 -120 4.5 TTTTGTTAAGCAGATCAAAATA
Shewanella pealeana ATCC 700345 Spea_2091 -120 4.2 TAGTGTTAACTGTGTCAAATAA
Shewanella halifaxensis HAW-EB4 Shal_2064 -93 4.1 TTGTGTTAACTGCGTCAAATAA
Shewanella piezotolerans WP3 swp_2516 -119 4.5 AAATGTTATCTCTGTCAAACAA
Shewanella sediminis HAW-EB3 Ssed_2279 -159 4.2 ATGTGTTAACTGGGTCAAATAT
Position: -221
Score: 4.3
Sequence: TAGCTTGATCTAGATCAACTTT
Position: -178
Score: 4.4
Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: swp_2572
swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -162
Score: 4.4
Sequence: AAATGTGATGTTTAACTCAAAG
Locus tag: swp_2633
swp_2633 -162 4.4 AAATGTGATGTTTAACTCAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1 SO2222 -105 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32 Sputcn32_1807 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1 Sputw3181_2218 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3 Shewana3_2302 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4 Shewmr4_2124 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7 Shewmr7_2200 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155 Sbal_1918 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217 Sden_1912 -131 3.9 AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2156 -122 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B Sama_1688 -144 4.2 ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4 Shew_1904 -111 3.9 AAATGTGATGTTCCCCTAAAAG
-73 4.8 TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_2038 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4 Shal_2256 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3 swp_2633 -162 4.4 AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3 Ssed_2358 -194 3.8 AAATGTGATATTCCCCTAAAAG
Position: -153
Score: 3.6
Sequence: ACTTGTGAAGTGTATCATTGTT
Locus tag: swp_2753
swp_2753 -153 3.6 ACTTGTGAAGTGTATCATTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1 SO2880 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32 Sputcn32_1688 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1 Sputw3181_2337 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3 Shewana3_1640 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4 Shewmr4_1573 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7 Shewmr7_1648 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155 Sbal_1783 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217 Sden_1640 -137 4.5 TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -155 4.5 TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B Sama_1919 -173 4.2 ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4 Shew_1835 -164 4.2 AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345 Spea_1964 -154 3.6 ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4 Shal_2335 -154 3.9 AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3 swp_2753 -153 3.6 ACTTGTGAAGTGTATCATTGTT
Position: -239
Score: 3.8
Sequence: TTTAATAATATAGATCATAAAA
Position: -143
Score: 4.1
Sequence: TATTTTGATATTGATGAAATTA
Position: -2
Score: 4
Sequence: ATATGGAATTTCTATCACCTTT
Locus tag: swp_2809
swp_2809 -239 3.8 TTTAATAATATAGATCATAAAA
-143 4.1 TATTTTGATATTGATGAAATTA
-2 4 ATATGGAATTTCTATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1 SO2591 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 3.7 TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_2193 -63 3.8 TATTTTGATATTGAATAAAATA
-34 4 TTATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1 Sputw3181_1816 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3 Shewana3_1787 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4 Shewmr4_1682 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7 Shewmr7_1757 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155 Sbal_2438 -2 4.2 TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217 Sden_1731 -139 4.2 ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B Sama_1594 -2 3.9 TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4 Shew_1811 -94 4.6 TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345 Spea_1944 -62 4.1 TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4 Shal_2355 -62 4.1 TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3 swp_2809 -239 3.8 TTTAATAATATAGATCATAAAA
-143 4.1 TATTTTGATATTGATGAAATTA
-2 4 ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_2474 -94 4.6 TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908 Swoo_2142 -52 4 TACTTTGATATTGAACAAAATA
Position: -115
Score: 4.9
Sequence: TAATGTGATCTTGTTATCAATT
Locus tag: swp_2869
swp_2869 -115 4.9 TAATGTGATCTTGTTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1965 -148 4.4 TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_1672 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1 Sputw3181_2353 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3 Shewana3_2480 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4 Shewmr4_2290 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7 Shewmr7_2362 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155 Sbal_2614 -148 4.7 TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217 Sden_2161 -146 4.3 CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400 Sfri_2325 -135 5.1 ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B Sama_1570 -135 4.7 ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4 Shew_2153 -115 5.1 TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345 Spea_1875 -114 4.3 TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4 Shal_2408 -114 4.5 TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3 swp_2869 -115 4.9 TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3 Ssed_2686 -116 4.5 ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908 Swoo_1933 -116 4.5 ATGTGTGATCTAAGTATCAATT
Position: -84
Score: 3.5
Sequence: TTTTTTGCTGTTGTTAGCAACT
Position: -61
Score: 4.1
Sequence: AATTGATAACAAGATCACATTA
Locus tag: swp_2870
swp_2870 -84 3.5 TTTTTTGCTGTTGTTAGCAACT
-61 4.1 AATTGATAACAAGATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgA
Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shewanella oneidensis MR-1 SO1963 -92 3.8 AATTGATAAGAAGATCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_1671 -66 4.1 AATTGATAACAAGATCACATAA
Shewanella sp W3-18-1 Sputw3181_2354 -66 4.1 AATTGATAACAAGATCACATAA
Shewanella sp ANA-3 Shewana3_2481 -144 3.9 TTTTTAGATTGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella sp MR-4 Shewmr4_2291 -144 3.9 TTTTTAGATTGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella sp MR-7 Shewmr7_2363 -144 3.9 TTTTTAGATAGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella baltica OS155 Sbal_2615 -144 3.5 TTTTTAGATTGAGATAACGGAT
-88 4 AATTGATAACAAGATCACACTA
Shewanella denitrificans OS217 Sden_2162 -122 3.6 AATTGATAGCTAGATCACAACG
Shewanella frigidimarina NCIMB 400 Sfri_2326 -126 3.5 TTTGTTGATCTTTACCACTAAA
-106 5 AATTGTAAGTTAGATCACATAT
Shewanella amazonensis SB2B Sama_1569 -78 4.5 AATTGATACCCAGATCACATAT
Shewanella loihica PV-4 Shew_2154 -61 5.1 AATTGTTACTTAGATCACATAA
Shewanella pealeana ATCC 700345 Spea_1874 -63 4 AAATTGAACCTAGATCACATTA
Shewanella halifaxensis HAW-EB4 Shal_2409 -63 3.9 AAATTAAAGCTAGATCACATTA
Shewanella piezotolerans WP3 swp_2870 -84 3.5 TTTTTTGCTGTTGTTAGCAACT
-61 4.1 AATTGATAACAAGATCACATTA
Position: -184
Score: 4.3
Sequence: TAGTTTGATGGAGCGCACGTTT
Locus tag: swp_2923
swp_2923 -184 4.3 TAGTTTGATGGAGCGCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_1504
Ortholog function: cytochrome c3
Shewanella frigidimarina NCIMB 400 Sfri_1504 -250 4 TTACATGATATAGCGCACATCT
-144 3.9 TAATTTGAGATTGTTTATAAAT
Shewanella pealeana ATCC 700345 Spea_1806 -155 4.5 TAATTTGATGGAGCGCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_2472 -156 4.5 TAATTTGACTGAGCGCACATTT
Shewanella piezotolerans WP3 swp_2923 -184 4.3 TAGTTTGATGGAGCGCACGTTT
Position: -20
Score: 4.6
Sequence: AACTGTGACCTAGTTCACGGAT
Locus tag: swp_2955
swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -42
Score: 3.8
Sequence: TACATTGATATCTATCACTATT
Locus tag: swp_3020
swp_3020 -42 3.8 TACATTGATATCTATCACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yceI
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_1651 -70 3.8 TAAATGGATGTAAATCACGATT
Shewanella sp W3-18-1 Sputw3181_2375 -70 3.8 TAAATGGATGTAAATCACGATT
Shewanella sp ANA-3 Shewana3_1628 -102 4.6 TTAGGTGATCTTTGTCACAGAT
Shewanella sp MR-4 Shewmr4_1561 -103 4.8 TTAGGTGATCTTTGTCACAAAT
Shewanella sp MR-7 Shewmr7_1636 -103 4.8 TTAGGTGATCTTTGTCACAAAT
Shewanella baltica OS155 Sbal_1772 -105 4.7 TTAGGTGATGTGGGTCACGTTT
Shewanella pealeana ATCC 700345 Spea_2476 -166 3.8 TTACGTGCTGAATTGCAAAATT
-69 3.8 AATTGTTACGCATCTTACGCTA
Shewanella piezotolerans WP3 swp_3020 -42 3.8 TACATTGATATCTATCACTATT
Position: -82
Score: 4.1
Sequence: AAGTGCGATCTCTGTCGCATTC
Locus tag: swp_3037
swp_3037 -82 4.1 AAGTGCGATCTCTGTCGCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1 SO2791 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_1568 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1 Sputw3181_2531 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3 Shewana3_2573 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4 Shewmr4_2411 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7 Shewmr7_2481 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155 Sbal_1694 -157 3.8 ATTCGTGAATAGACTCACTCTA
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_1637 -44 3.8 AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B Sama_1974 -82 4 AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_1783 -81 3.9 AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3 swp_3037 -82 4.1 AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3 Ssed_2618 -82 3.9 AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908 Swoo_2048 -82 3.9 AAATGGGAGAAAGATCCCATTA
Position: -87
Score: 4.2
Sequence: GAATGTGATCTAGCTCACAGGT
Locus tag: swp_3059
swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2589
Ortholog function: isopenicillin N synthase
Shewanella frigidimarina NCIMB 400 Sfri_1487 -55 4 AAGTGTGACTAAGGTTACCATT
Shewanella loihica PV-4 Shew_1590 -85 4.3 AAACGTGATTTTTATCACACCC
Shewanella pealeana ATCC 700345 Spea_2507 -84 4.2 AAGCGTGATCTAGCTCACTCAC
Shewanella halifaxensis HAW-EB4 Shal_1764 -84 4.4 CAGCGTGATCTACGTCACATTG
Shewanella piezotolerans WP3 swp_3059 -87 4.2 GAATGTGATCTAGCTCACAGGT
Shewanella sediminis HAW-EB3 Ssed_2637 -51 5.1 AAACGTGATTTCAATCACACTT
Shewanella woodyi ATCC 51908 Swoo_2030 -82 4.2 CAAGGTGATTTATCTCACACAG
Position: -122
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: swp_3140
swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -97
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: swp_3141
swp_3141 -97 4.6 AAGTGTGATCTGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1 SO3090 -165 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32 Sputcn32_2461 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1 Sputw3181_1547 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3 Shewana3_1459 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4 Shewmr4_1406 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7 Shewmr7_1471 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155 Sbal_2762 -148 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217 Sden_1528 -157 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400 Sfri_2678 -167 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B Sama_2169 -137 4.2 AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4 Shew_2427 -296 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345 Spea_2600 -306 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4 Shal_2672 -319 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3 swp_3141 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3 Ssed_1627 -316 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908 Swoo_3028 -306 4.8 AAATGTGATCTGATTCTAACTT
Position: -72
Score: 3.7
Sequence: ATTATTGAGCTATAGCTCAAAT
Position: -70
Score: 4.3
Sequence: TATTGAGCTATAGCTCAAATAT
Locus tag: swp_3151
swp_3151 -72 3.7 ATTATTGAGCTATAGCTCAAAT
-70 4.3 TATTGAGCTATAGCTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32 Sputcn32_2469 -60 4.2 AGGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1 Sputw3181_1539 -60 4.4 ATGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3 Shewana3_1451 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4 Shewmr4_1398 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7 Shewmr7_1463 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155 Sbal_2770 -102 3.8 AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2686 -64 4.5 AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B Sama_2177 -77 3.8 AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345 Spea_2608 -104 3.8 TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4 Shal_2680 -74 3.7 ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3 swp_3151 -72 3.7 ATTATTGAGCTATAGCTCAAAT
-70 4.3 TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_1619 -72 3.9 TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908 Swoo_3036 -86 4.4 GTATATGACCCAGTTCACATTT
Position: -123
Score: 3.8
Sequence: TTATGCGCCCTTCATCACCCTA
Locus tag: swp_3241
swp_3241 -123 3.8 TTATGCGCCCTTCATCACCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nadC
Ortholog function: di-and tricarboxylate transporter
Shewanella putrefaciens CN-32 Sputcn32_3393 -262 4.5 AAGCGTGATTAGTGTCACAGTT
-154 4.1 TTTGGTGATTTTTGTCGCGTAA
-125 3.9 TTTTGCGATTTTTATCGACAAA
-92 3.8 TGATGTGATAAAGCTACAAAAT
-57 4.4 ATGTGTGATCTATGCCATAAAT
Shewanella sp W3-18-1 Sputw3181_0550 -262 4.8 AAGTGTGATTAGTGTCACAGTT
-154 4.1 TTTGGTGATTTTTGTCGCGTAA
-125 3.9 TTTTGCGATTTTTATCGACAAA
-92 3.8 TGATGTGATAAAGCTACAAAAT
-57 3.8 GTGTGTGATCTATGCCATAAAT
Shewanella sp ANA-3 Shewana3_0451 -262 4.4 AAGTTTGACATGGGTCACAGTT
Shewanella baltica OS155 Sbal_0427 -57 3.8 AAGTGTGATCTATGCCCTAAAT
Shewanella pealeana ATCC 700345 Spea_2663 -262 4.3 TAAAGTGATCGCGATCACACCG
-152 4.4 AATAGTGACAAACATCACATCA
Shewanella halifaxensis HAW-EB4 Shal_2750 -250 4.5 TAAAGAGATCGAGATCACACTA
-140 3.8 TTAAGAGATGTTTATCGCAATC
Shewanella piezotolerans WP3 swp_3241 -123 3.8 TTATGCGCCCTTCATCACCCTA
Shewanella sediminis HAW-EB3 Ssed_1560 -127 3.9 AAAATAGATCTACTTCACCTAT
Position: -280
Score: 4.6
Sequence: AAGCGTGATCTACGTCACACTG
Position: -157
Score: 4.2
Sequence: AGTTGAGAGATTTGTCACATAA
Position: -95
Score: 3.8
Sequence: AATGTTGATCTAGATAAAGTTA
Locus tag: swp_3271
swp_3271 -280 4.6 AAGCGTGATCTACGTCACACTG
-157 4.2 AGTTGAGAGATTTGTCACATAA
-95 3.8 AATGTTGATCTAGATAAAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -153 4 CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1 Sputw3181_2621 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3 Shewana3_2671 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4 Shewmr4_2505 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7 Shewmr7_2573 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155 Sbal_1594 -276 5 AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217 Sden_2415 -148 3.9 ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B Sama_1214 -228 3.8 AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4 Shew_2518 -245 5.2 ATATGTGATCTAGATCACGTTG
-155 4.2 GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345 Spea_2691 -247 5.5 TTATGTGATGCGTATCACACTT
-158 4.2 AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -279 4.7 AAGTGTGATCTGTGTCAAGTTT
-158 4.7 AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3 swp_3271 -280 4.6 AAGCGTGATCTACGTCACACTG
-157 4.2 AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3 Ssed_1531 -275 4.9 AAGTGTGATCTTGGTCACGCTA
-158 4.3 AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908 Swoo_3123 -272 4.7 AATCGTGACTTATATCACTTAA
-157 4.2 AGTTGGGACTTTTGTCACATAA
Position: -308
Score: 4.2
Sequence: TTATGTGACAAATCTCTCAACT
Position: -185
Score: 4.6
Sequence: CAGTGTGACGTAGATCACGCTT
Locus tag: swp_3272
swp_3272 -308 4.2 TTATGTGACAAATCTCTCAACT
-185 4.6 CAGTGTGACGTAGATCACGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -339 3.8 TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3 Shewana3_2672 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4 Shewmr4_2506 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7 Shewmr7_2574 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155 Sbal_1593 -304 3.8 TTATGTGACAAAAATACCAATG
-181 4.8 AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B Sama_1213 -189 3.9 CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4 Shew_2519 -260 4.5 TTATGTGACAGATATCTCAATC
-170 5.3 CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345 Spea_2692 -286 4.1 TTATGTGACAAAACTCTCAACT
-197 5.4 AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2778 -305 4.5 TTATGTGATAAATATCTCAACT
-184 4.6 AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3 swp_3272 -308 4.2 TTATGTGACAAATCTCTCAACT
-185 4.6 CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3 Ssed_1530 -291 4 TTATGTGACAAAAGTCTCAACT
-174 4.8 TAGCGTGACCAAGATCACACTT
Position: -4
Score: 3.5
Sequence: AAAAATGATGAACGTAAAAAAA
Locus tag: swp_3278
swp_3278 -4 3.5 AAAAATGATGAACGTAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -248 3.7 TGTTGTTTTTTTGCTCTCAATT
-190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_1478 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1 Sputw3181_2623 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3 Shewana3_2676 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4 Shewmr4_2510 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7 Shewmr7_2578 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155 Sbal_1589 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_2637 -164 3.8 TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B Sama_1208 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4 Shew_2525 -179 3.6 TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2784 -264 4 TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3 Ssed_1525 -191 4 TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_3125 -288 3.7 ATGAGTTACAACTTTCACACAT
Position: -175
Score: 4.4
Sequence: AATGTTGAGCGAGATCACATTT
Locus tag: swp_3387
swp_3387 -175 4.4 AATGTTGAGCGAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atoB
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella amazonensis SB2B Sama_1375 -67 4.1 AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4 Shew_1667 -75 4.2 TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345 Spea_2783 -138 4.5 AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_2878 -138 4.2 AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3 swp_3387 -175 4.4 AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1473 -92 4.3 TTAATTGAGCAAGATCACACTT
Position: -214
Score: 4
Sequence: TTGCGTGTTGTATGTCACCAAA
Position: -161
Score: 4.4
Sequence: AAATGTGATCGCGATCACTGCT
Locus tag: swp_3395
swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -161 4.4 TAGCGTGATTTGGATCTCAATG
-110 4.4 AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_1392 -211 4.2 ATAAATGCTGCGTATCACATAA
-158 4 TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1 Sputw3181_2709 -211 4.2 ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3 Shewana3_2775 -107 3.8 AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155 Sbal_1490 -158 4 TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217 Sden_2589 -157 4.2 TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400 Sfri_1334 -232 3.9 TCGCTTGATCAACCTCACAAAA
-170 3.9 TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345 Spea_2787 -159 4.4 TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4 Shal_2887 -161 5.1 AAATGTGATCTTCATCGCCTTT
-111 4.8 ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3 swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3 Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908 Swoo_3207 -211 4.3 AATTATGACGTCGCTCACTAAA
-158 4.5 AAGTGTGAGTTCGATCAAGTAT
-108 3.9 TTTATTGATTTGGATCAATAAA
Position: -230
Score: 4.2
Sequence: TACTTTGATTGTTTTCTCATTA
Position: -67
Score: 4.4
Sequence: AAATTTGATCTGCCGCTCAATT
Locus tag: swp_3422
swp_3422 -230 4.2 TACTTTGATTGTTTTCTCATTA
-67 4.4 AAATTTGATCTGCCGCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE
Ortholog function: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella loihica PV-4 Shew_3003 -49 4.9 TTTTGTGACGTAATGCACACTA
Shewanella pealeana ATCC 700345 Spea_1234 -68 3.9 AAATTTGATCTATGCCTCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1266 -67 4.4 AAGTTTGATCTACAGCTCATTT
Shewanella piezotolerans WP3 swp_3422 -67 4.4 AAATTTGATCTGCCGCTCAATT
Position: -276
Score: 3.7
Sequence: TATTTCAATAAGGATCAAATAT
Locus tag: swp_3472
swp_3472 -276 3.7 TATTTCAATAAGGATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: electron transfer flavoprotein, beta subunit
Shewanella denitrificans OS217 Sden_2539 -175 4.4 TCATATGATTTTCATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2748 -153 4.2 TAGTTTGATTGCCACCACAATA
Shewanella pealeana ATCC 700345 Spea_2855 -283 4.1 TATTTGGATAAGGATCAAATAT
Shewanella piezotolerans WP3 swp_3472 -276 3.7 TATTTCAATAAGGATCAAATAT
Shewanella woodyi ATCC 51908 Swoo_3236 -214 4.5 ATTTGTGAATGTACTCATATAT
Position: -93
Score: 4.2
Sequence: TATTTTGAAAAAAAGCACAAAT
Locus tag: swp_3524
swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: -271
Score: 4.4
Sequence: TTCCTTGATCGAGATCACACAA
Locus tag: swp_3538
swp_3538 -271 4.4 TTCCTTGATCGAGATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1613
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO1613 -75 4 TTCCTTGATTTAGCTCACACTC
Shewanella putrefaciens CN-32 Sputcn32_1334 -142 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp W3-18-1 Sputw3181_2769 -142 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp ANA-3 Shewana3_2830 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp MR-4 Shewmr4_2656 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp MR-7 Shewmr7_2723 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella baltica OS155 Sbal_1436 -138 4.1 TTCCTTGACTTAGCTCACACTT
Shewanella amazonensis SB2B Sama_1125 -126 4.5 TTCCTTGATCCAGATCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2994 -181 4.6 TTCCTTGATCTAGATCACACTA
Shewanella piezotolerans WP3 swp_3538 -271 4.4 TTCCTTGATCGAGATCACACAA
Position: -268
Score: 4.5
Sequence: ATATTAGATCTAAATCACACTT
Position: -238
Score: 3.9
Sequence: TAACGTTAGTTACCACACAAAA
Locus tag: swp_3549
swp_3549 -268 4.5 ATATTAGATCTAAATCACACTT
-238 3.9 TAACGTTAGTTACCACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1603
Ortholog function: putative transcriptional regulator, inferred for PFA pathway
Shewanella pealeana ATCC 700345 Spea_2906 -269 3.9 AAGCAAGATTTAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3007 -265 4.2 ATGTTTGAGCTAGATCACTCTT
Shewanella piezotolerans WP3 swp_3549 -268 4.5 ATATTAGATCTAAATCACACTT
-238 3.9 TAACGTTAGTTACCACACAAAA
Shewanella sediminis HAW-EB3 Ssed_3201 -267 4.6 TTATTTGACCTGGATCACGCTT
Shewanella woodyi ATCC 51908 Swoo_1424 -228 4 AAATGAAACATCTATCACACAT
Position: -184
Score: 4.4
Sequence: AACTGTGATCTCTATCACCGAC
Locus tag: swp_3568
swp_3568 -184 4.4 AACTGTGATCTCTATCACCGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: tonB-dependent receptor, putative
Shewanella frigidimarina NCIMB 400 Sfri_2440 -90 4 TTTTTTGCCACATATAACAAAA
Shewanella pealeana ATCC 700345 Spea_2930 -193 5.2 TTTTGTGATCTTCGTCACCTAT
Shewanella halifaxensis HAW-EB4 Shal_3021 -193 5.2 ATTTGTGACGTTGATCACCTAT
Shewanella piezotolerans WP3 swp_3568 -184 4.4 AACTGTGATCTCTATCACCGAC
Position: -144
Score: 4.2
Sequence: AAAGGTGAGCAATCTCACGTTT
Locus tag: swp_3605
swp_3605 -144 4.2 AAAGGTGAGCAATCTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1539
Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewanella putrefaciens CN-32 Sputcn32_1287 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp W3-18-1 Sputw3181_2819 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp ANA-3 Shewana3_2889 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-4 Shewmr4_2719 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-7 Shewmr7_2790 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella baltica OS155 Sbal_1369 -128 4.5 AATAGTGAGCAATATCACGATT
Shewanella frigidimarina NCIMB 400 Sfri_2778 -313 4.7 AATAGTGAGTATTATCACATTA
Shewanella amazonensis SB2B Sama_2422 -183 4.7 TTATGTGATTTATGTCTCGATT
Shewanella loihica PV-4 Shew_2759 -171 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella pealeana ATCC 700345 Spea_2979 -113 4.3 AAGAGTGAGCGATCTCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_3068 -114 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella piezotolerans WP3 swp_3605 -144 4.2 AAAGGTGAGCAATCTCACGTTT
Shewanella sediminis HAW-EB3 Ssed_3317 -103 4.8 AATAGTGAGCAATCTCACATTT
Shewanella woodyi ATCC 51908 Swoo_3465 -159 4.4 AATAGTGAGCAGTCTCACGTTT
Position: -293
Score: 4.6
Sequence: AAACGTGAGATTGCTCACCTTT
Position: -137
Score: 3.7
Sequence: AGGTATGACCTAAAACACAGAT
Locus tag: swp_3606
swp_3606 -293 4.6 AAACGTGAGATTGCTCACCTTT
-137 3.7 AGGTATGACCTAAAACACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1 SO1538 -149 4.7 ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32 Sputcn32_1286 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1 Sputw3181_2820 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3 Shewana3_2890 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-4 Shewmr4_2720 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-7 Shewmr7_2791 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella baltica OS155 Sbal_1368 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217 Sden_2561 -143 3.8 AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_2779 -148 4.7 TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B Sama_2423 -89 4.5 AATCGAGACATAAATCACATAA
Shewanella loihica PV-4 Shew_2760 -150 4.4 AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345 Spea_2980 -146 4.2 AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4 Shal_3069 -149 4.4 AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3 swp_3606 -293 4.6 AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3 Ssed_3318 -151 4.7 AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908 Swoo_3466 -148 4.3 AAACGTGAGACTGCTCACTATT
Position: -210
Score: 4.5
Sequence: ATGTGTGATCTGTATCACTCAG
Locus tag: swp_3737
swp_3737 -210 4.5 ATGTGTGATCTGTATCACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3541
Ortholog function: sodium:alanine symporter family protein
Shewanella baltica OS155 Sbal_1047 -220 3.9 AAACGCGAGCTTGATCACATGA
Shewanella denitrificans OS217 Sden_2730 -140 4.6 TAATGTGAACTGGATCACTAAG
Shewanella frigidimarina NCIMB 400 Sfri_2897 -306 4.2 AAGTGTGATGGATATCACTTGT
Shewanella loihica PV-4 Shew_1092 -210 4.4 AACTGTGATCTGTATCACATGG
Shewanella pealeana ATCC 700345 Spea_1077 -207 4.1 AACTGTGATCTATATCGCTCAG
Shewanella piezotolerans WP3 swp_3737 -210 4.5 ATGTGTGATCTGTATCACTCAG
Shewanella sediminis HAW-EB3 Ssed_1187 -214 4.2 AACTGTGATCTGCGTCACATGG
Shewanella woodyi ATCC 51908 Swoo_1283 -215 4.2 AAGTGTGATCGTGATCACGCGA
Position: -237
Score: 4.5
Sequence: CTGAGTGATACAGATCACACAT
Locus tag: swp_3738
swp_3738 -237 4.5 CTGAGTGATACAGATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1 SO3542 -95 4.2 AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32 Sputcn32_1051 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1 Sputw3181_3114 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3 Shewana3_3145 -95 4 AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4 Shewmr4_2965 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella sp MR-7 Shewmr7_3047 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella baltica OS155 Sbal_1046 -235 4.4 TCATGTGATCAAGCTCGCGTTT
-96 4.1 AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217 Sden_2731 -233 5 CTTAGTGATCCAGTTCACATTA
-94 3.7 AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2898 -233 4.5 ACAAGTGATATCCATCACACTT
-95 3.8 AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B Sama_0915 -240 4.1 ACTCGTGATCAAGCTCACGGTT
-99 4.1 AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4 Shew_1091 -238 4.6 CCATGTGATACAGATCACAGTT
-97 4 AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345 Spea_1076 -235 3.9 CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_1124 -56 4.3 TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3 swp_3738 -237 4.5 CTGAGTGATACAGATCACACAT
-96 3.8 AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3 Ssed_1186 -238 4.4 CCATGTGACGCAGATCACAGTT
-97 4.2 AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908 Swoo_1282 -238 4.4 TCGCGTGATCACGATCACACTT
-97 3.8 AAACAAGATATAGAACACATTT
Position: -76
Score: 4.6
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: swp_3757
swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -42
Score: 4.4
Sequence: TAAGGTGATCTCTTTCATAGTT
Locus tag: swp_3762
swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO1363 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1174 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2990 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2832 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2914 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1216 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3609 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1069 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1055 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1103 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1260 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -98
Score: 4.6
Sequence: TCATTTGACTTAGATCACAAAT
Locus tag: swp_3798
swp_3798 -98 4.6 TCATTTGACTTAGATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO1329 -162 4.7 TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1140 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1 Sputw3181_3024 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3 Shewana3_3045 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4 Shewmr4_2867 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7 Shewmr7_2949 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155 Sbal_1182 -101 4.7 TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217 Sden_2784 -157 4.8 TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2947 -158 4.4 TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B Sama_0861 -102 4.2 TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4 Shew_1036 -162 4.6 TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345 Spea_1019 -100 4.6 TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_1065 -99 5.1 TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3 swp_3798 -98 4.6 TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_1130 -103 4.3 TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908 Swoo_1225 -96 4.3 TCATTTGACTAAGATCACAAAT
Position: -111
Score: 3.8
Sequence: TTATTTGAGCTAGCGCTAATAA
Locus tag: swp_3802
swp_3802 -111 3.8 TTATTTGAGCTAGCGCTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1326
Ortholog function: COG1242: Predicted Fe-S oxidoreductase
Shewanella oneidensis MR-1 SO1326 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella putrefaciens CN-32 Sputcn32_1137 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.6 ATTTGTGAGGTAGATCGCTAAA
Shewanella sp W3-18-1 Sputw3181_3027 -293 4.3 AATAGTGATTTTTATTGCAAAT
-224 4.3 GTTTGTGATGTAGATCGCTAAA
Shewanella sp ANA-3 Shewana3_3048 -294 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-4 Shewmr4_2870 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella sp MR-7 Shewmr7_2952 -55 4.3 AATAGTGATTTTTATTGCAAAT
Shewanella baltica OS155 Sbal_1179 -293 3.9 AATAGTGATTTTTATTGCAAAC
-225 4.2 TGATGTGAGCAATATCTCAATG
-193 4.3 TAATTTGAGGATGCGCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2950 -128 3.9 TTTTTTGAGTTTGTGCACAACT
Shewanella loihica PV-4 Shew_1033 -148 4.4 AAAAGTGATTTTTATTGCATAT
-127 4 TACAGTGAATTATTTAACAAAT
Shewanella pealeana ATCC 700345 Spea_1014 -303 3.9 TAAATTGACCTGTATAACCTTA
-201 4 TAAAGTGATTTTTTTTGCAGAT
Shewanella halifaxensis HAW-EB4 Shal_1062 -210 4 TAAAGTGATTTTTCTTGCAGAT
Shewanella piezotolerans WP3 swp_3802 -111 3.8 TTATTTGAGCTAGCGCTAATAA
Shewanella woodyi ATCC 51908 Swoo_1222 -229 3.8 AAATATGAGTTCTATTGCAAAT
Position: -141
Score: 4.7
Sequence: TTCTGTGATTCAGGTCGCAAAT
Locus tag: swp_3809
swp_3809 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_1323
Ortholog function: HTH-type transcriptional regulator BetI
Shewanella frigidimarina NCIMB 400 Sfri_1948 -111 4.9 TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345 Spea_1009 -164 4.1 ATGCGTGAGGTGAGTCACGCTT
-135 3.7 AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4 Shal_1059 -163 4.3 ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3 swp_3809 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_1121 -140 4.3 ATCTGTGATGCAAGTCGCAATC
Position: -91
Score: 3.7
Sequence: AAATACAATAATGATCACACTT
Position: -59
Score: 3.7
Sequence: TTCGGTGATTAGCATCACAGCT
Locus tag: swp_3875
swp_3875 -91 3.7 AAATACAATAATGATCACACTT
-59 3.7 TTCGGTGATTAGCATCACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfcA
Ortholog function: NAD-dependent malic enzyme (EC 1.1.1.38)
Shewanella oneidensis MR-1 SO3855 -66 4 TTACGTGACCTATAGCACGTCT
Shewanella putrefaciens CN-32 Sputcn32_0784 -54 4.4 TTACGTGACTTAAAGCACGTAT
Shewanella sp W3-18-1 Sputw3181_3391 -54 4.4 TTACGTGACTTAAAGCACGTAT
Shewanella sp ANA-3 Shewana3_0750 -65 3.9 TTACGTGACTTACAGCACGTCT
Shewanella sp MR-4 Shewmr4_3188 -66 3.9 TTACGTGACTTACAGCACGTCT
Shewanella sp MR-7 Shewmr7_0778 -66 3.9 TTACGTGACTTACAGCACGTCT
Shewanella baltica OS155 Sbal_0676 -55 4.4 TTACGTGACTTACAGCACGTAT
Shewanella frigidimarina NCIMB 400 Sfri_0833 -122 5 TAATGTGATTTTACTCACTTAA
Shewanella sediminis HAW-EB3 Ssed_3518 -87 3.7 AAACGCAACAAAGATCACACTT
Position: -69
Score: 5.2
Sequence: AAATGTGATCTGTCTTACATTT
Locus tag: swp_3928
swp_3928 -69 5.2 AAATGTGATCTGTCTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lipB
Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewanella oneidensis MR-1 SO1162 -68 5.1 AAGTGTGATCTATCTTACATTT
Shewanella putrefaciens CN-32 Sputcn32_2875 -69 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp W3-18-1 Sputw3181_1028 -75 5.3 AAATGTGATCTATCTTACATTT
Shewanella sp ANA-3 Shewana3_0989 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-4 Shewmr4_0985 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sp MR-7 Shewmr7_1050 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella baltica OS155 Sbal_3281 -74 5.2 AAATGTGATCTGTCTTACATTT
Shewanella loihica PV-4 Shew_2941 -70 5.3 AAATGTGATCTACCTTACATTT
Shewanella pealeana ATCC 700345 Spea_3155 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella halifaxensis HAW-EB4 Shal_3240 -76 5.2 AAATGTGATCCGTATTACATTT
Shewanella piezotolerans WP3 swp_3928 -69 5.2 AAATGTGATCTGTCTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3491 -75 5.3 AAATGTGATCTAGCTTACATTT
Shewanella woodyi ATCC 51908 Swoo_3714 -74 5.1 AAGTGTGATCTAGCTTACAATT
Position: -150
Score: 4
Sequence: AAATGTGAGCAACAACACGTTC
Locus tag: swp_3958
swp_3958 -150 4 AAATGTGAGCAACAACACGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: cytochrome c552 precursor (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_0685 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp W3-18-1 Sputw3181_3486 -149 3.9 AAGTGTGAACAACAACACTATT
-126 4.1 CATTTTGATCTGGCGCAAACTT
Shewanella sp ANA-3 Shewana3_0658 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-4 Shewmr4_0659 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella sp MR-7 Shewmr7_3363 -131 3.9 AAGTGTGAACAACAACACTATT
-108 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella baltica OS155 Sbal_0794 -149 4.4 AAATGTGAACAACAACACCTTT
-126 4.1 CATTTTGATCTAGCGCAAACTT
Shewanella loihica PV-4 Shew_0844 -156 4.5 AAATGTGACCAACAACACATTC
-133 4.2 CATTATGATCTGCCTCAAGTTT
Shewanella pealeana ATCC 700345 Spea_0831 -183 4 ATACTTGATTACATTAACAAAT
-155 3.8 AAGTGTGAGCAACAACACGTTC
-71 4.1 ATAAGTGATTAAATTCAACCTT
Shewanella halifaxensis HAW-EB4 Shal_0886 -152 4.2 AAGTGTGAGCAACAACACATTC
Shewanella piezotolerans WP3 swp_3958 -150 4 AAATGTGAGCAACAACACGTTC
Shewanella sediminis HAW-EB3 Ssed_0931 -154 4.6 AAGTGTGAGCAACACCACATTT
-131 3.9 CATTTTGATCTACCGCATACTT
Shewanella woodyi ATCC 51908 Swoo_0972 -154 4.4 AAATGTGAGCAACAACACGTTT
Position: -222
Score: 3.7
Sequence: ATGCGCGATTTGCATTACCTTT
Locus tag: swp_3965
swp_3965 -222 3.7 ATGCGCGATTTGCATTACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD-2
Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella putrefaciens CN-32 Sputcn32_0970 -118 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella sp W3-18-1 Sputw3181_3197 -117 4.6 CGTTGTGATGTTTTTCACGATA
Shewanella frigidimarina NCIMB 400 Sfri_3097 -256 5 TTTGGTGACATAGATCACATAT
Shewanella piezotolerans WP3 swp_3965 -222 3.7 ATGCGCGATTTGCATTACCTTT
Shewanella sediminis HAW-EB3 Ssed_3695 -135 5.4 TAATGTGATCTATTTCTCATAT
Shewanella woodyi ATCC 51908 Swoo_3995 -147 3.7 AACCATGATCTATTTCGTAATT
Position: -258
Score: 4.3
Sequence: TTTATTGATCTAGATCTAATAA
Locus tag: swp_4010
swp_4010 -258 4.3 TTTATTGATCTAGATCTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1 SO0940 -246 4.3 TAATGTGAGCGAAGGCACGATA
Shewanella sp MR-4 Shewmr4_0783 -246 3.8 CAATGTGCATCAACGCACATTA
Shewanella sp MR-7 Shewmr7_3240 -246 3.8 CAATGTGTGCCTGCGCACATTA
Shewanella baltica OS155 Sbal_0833 -75 4 TTGGGTTAGCAAGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3632 -334 4.6 AAATGTGATTCAAAGCAGATAA
-234 4.3 TTTCATGATGTAAGTCTCATTA
-156 5 TGACGTGATATCGCTCACAAAT
Shewanella loihica PV-4 Shew_0760 -234 3.9 CGATGTGAAGCTGATCACTCTA
Shewanella pealeana ATCC 700345 Spea_3438 -227 4.2 TTTCATGAACGATGTCACATTA
-149 3.8 GAGTGTGACTAACGTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3519 -227 4.6 TTCTGTGACCGATAGCACATTA
-149 4.4 CTGTGTGATTAACCTCTCATTT
Shewanella piezotolerans WP3 swp_4010 -258 4.3 TTTATTGATCTAGATCTAATAA
Shewanella sediminis HAW-EB3 Ssed_0883 -147 4.7 CAGTGTGATTTTGTTCGCAAAA
Shewanella woodyi ATCC 51908 Swoo_0885 -232 4.2 AATGGTGAGCTGGATCATGTTA
-145 4.5 CAATGTGATCCTCTTCGCAAAC
Position: -124
Score: 3.9
Sequence: TTTTGTGAGGTAGGTAAAGGTA
Locus tag: swp_4046
swp_4046 -124 3.9 TTTTGTGAGGTAGGTAAAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32 Sputcn32_3038 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1 Sputw3181_0907 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3 Shewana3_0871 -317 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4 Shewmr4_3066 -320 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7 Shewmr7_0906 -318 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155 Sbal_3400 -316 4.4 TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0813 -144 4 TTTTGCGCGGCAGTTCACATTG
-83 4.4 TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B Sama_2882 -130 3.9 AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4 Shew_0678 -126 4.1 ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345 Spea_0673 -140 4 TTTTGTGAGGTAGGTAAAGCTA
-98 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4 Shal_3525 -139 4 TTTTGTGAGGTAGGTAAAGCTA
-97 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3 swp_4046 -124 3.9 TTTTGTGAGGTAGGTAAAGGTA
-77 3.7 TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3 Ssed_3790 -120 4.9 ATTTGTGATGCAGGTAAAATTT
-78 4 TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908 Swoo_0793 -123 4.3 AATTGTGATATAGGTAAGAGTA
Position: -119
Score: 4.3
Sequence: TTTTATGATATGCATCACCTCA
Locus tag: swp_4059
swp_4059 -119 4.3 TTTTATGATATGCATCACCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cobA
Ortholog function: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Shewanella sp ANA-3 Shewana3_0862 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella sp MR-4 Shewmr4_3073 -248 4.2 TTATGTGAGGTGACGCAAGTTT
Shewanella sp MR-7 Shewmr7_0899 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_3188 -37 4.2 ATATTTGAACATGGTCAAATAT
-7 4.1 AAATGTGATGGAGTTAGTATCT
Shewanella pealeana ATCC 700345 Spea_0662 -148 4.1 CAATGTGTTGCATGGCACATAA
Shewanella piezotolerans WP3 swp_4059 -119 4.3 TTTTATGATATGCATCACCTCA
Position: -318
Score: 4.3
Sequence: TGAGGTGATGCATATCATAAAA
Locus tag: swp_4060
swp_4060 -318 4.3 TGAGGTGATGCATATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4060
Ortholog function: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shewanella sp ANA-3 Shewana3_0861 -204 4 AAACTTGCATCAGCTCACATAA
Shewanella sp MR-4 Shewmr4_3074 -203 3.9 AAACTTGCGTCACCTCACATAA
Shewanella sp MR-7 Shewmr7_0898 -204 4 AAACTTGCATCAGCTCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_3189 -251 4.5 ATATTTGACCATGTTCAAATAT
Shewanella loihica PV-4 Shew_0671 -217 4 AATAGTGATGAGGTTAATATAG
Shewanella pealeana ATCC 700345 Spea_0661 -283 4.1 TTATGTGCCATGCAACACATTG
Shewanella halifaxensis HAW-EB4 Shal_3535 -147 3.9 AAATATGAGCTTGTTCCAAATT
Shewanella halifaxensis HAW-EB4 Shal_2004 -157 4.3 TAATGTGATTTTCAGAATAATT
Shewanella piezotolerans WP3 swp_4060 -318 4.3 TGAGGTGATGCATATCATAAAA
Position: -147
Score: 4.1
Sequence: CAGCGTGATCTGCCGCACGTTT
Locus tag: swp_4077
swp_4077 -147 4.1 CAGCGTGATCTGCCGCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purT
Ortholog function: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Shewanella oneidensis MR-1 SO3613 -161 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella putrefaciens CN-32 Sputcn32_1001 -119 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella sp W3-18-1 Sputw3181_3164 -119 3.8 TAGCTTGATCAAAAACACAGTT
Shewanella sp ANA-3 Shewana3_3197 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-4 Shewmr4_3020 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella sp MR-7 Shewmr7_3101 -121 3.9 TAGCTTGATCGAAAACACAGTT
Shewanella pealeana ATCC 700345 Spea_0871 -176 4.4 AAGAGTGATCTCGCCCACACTT
Shewanella halifaxensis HAW-EB4 Shal_0924 -169 4.5 AGTAGTGATCTCGTGCACACAT
Shewanella piezotolerans WP3 swp_4077 -147 4.1 CAGCGTGATCTGCCGCACGTTT
Shewanella sediminis HAW-EB3 Ssed_0973 -160 4.6 TAAAGTGATCCACTACACACTT
Position: -233
Score: 3.9
Sequence: AAATATGATGTAGAGTATAAAT
Position: -46
Score: 3.9
Sequence: AAAACAGATCTAAATCACAAAA
Locus tag: swp_4100
swp_4100 -233 3.9 AAATATGATGTAGAGTATAAAT
-46 3.9 AAAACAGATCTAAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1 SO0770 -47 4.3 AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_3219 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1 Sputw3181_0722 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3 Shewana3_3509 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-4 Shewmr4_3339 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-7 Shewmr7_0614 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella baltica OS155 Sbal_0609 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_3173 -45 4.2 AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4 Shew_0867 -47 4.5 AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_0903 -46 3.9 AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3 swp_4100 -46 3.9 AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908 Swoo_1002 -47 3.8 AATGTAGACCTACATCACAAAA
Position: -327
Score: 4.2
Sequence: TTTTGTGATTTAGATCTGTTTT
Position: -140
Score: 3.8
Sequence: ATTTATACTCTACATCATATTT
Locus tag: swp_4101
swp_4101 -327 4.2 TTTTGTGATTTAGATCTGTTTT
-140 3.8 ATTTATACTCTACATCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1 SO0769 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32 Sputcn32_3220 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1 Sputw3181_0721 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3 Shewana3_3510 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4 Shewmr4_3340 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7 Shewmr7_0613 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155 Sbal_0608 -270 4.5 ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B Sama_0671 -262 4 ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4 Shew_0866 -282 4.6 TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3 swp_4101 -140 3.8 ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3 Ssed_0951 -254 3.8 ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1001 -311 4.5 TTTTGTGATGTAGGTCTACATT
Position: -7
Score: 3.3
Sequence: TTTTGTTATGTCATTGACTAAC
Locus tag: swp_4117
swp_4117 -7 3.3 TTTTGTTATGTCATTGACTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfB
Ortholog function: Cytochrome c-type protein NrfB precursor
Shewanella piezotolerans WP3 swp_4117 -97 3.3 TTATATAATGATTTTTATATTT
Position: -97
Score: 3.3
Sequence: TTATATAATGATTTTTATATTT
Locus tag: swp_4118
swp_4118 -97 3.3 TTATATAATGATTTTTATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2901 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3155 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella piezotolerans WP3 swp_4118 -97 3.3 TTATATAATGATTTTTATATTT
Position: -157
Score: 4.2
Sequence: TATTGTGACCGGTTACGCAGTA
Locus tag: swp_4120
swp_4120 -157 4.2 TATTGTGACCGGTTACGCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2899
Ortholog function: transcriptional regulator, LysR family
Shewanella amazonensis SB2B Sama_2899 -126 4.2 AACTGTGATCTGAACCGCAGAA
Shewanella loihica PV-4 Shew_3153 -137 4.2 AACTGTGATGTGATCCGCAGAA
Shewanella piezotolerans WP3 swp_4120 -157 4.2 TATTGTGACCGGTTACGCAGTA
Shewanella sediminis HAW-EB3 Ssed_3566 -184 5.1 ATGTGTGACCAGGTTCACAATT
Position: -248
Score: 4.2
Sequence: TAACGTGCTAAAGCTCACGAAA
Locus tag: swp_4239
swp_4239 -248 4.2 TAACGTGCTAAAGCTCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadC
Ortholog function: transcriptional regulator-related protein
Shewanella oneidensis MR-1 SO0936 -117 4.6 TTTATTGATGTAATTCACAGAT
Shewanella sp ANA-3 Shewana3_3347 -118 4.6 TTTATTGATGTGTTTCACAGAT
Shewanella sp MR-4 Shewmr4_0779 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella sp MR-7 Shewmr7_3244 -118 4.5 TTTATTGATGCATTTCACAGAT
Shewanella loihica PV-4 Shew_0757 -115 4.3 TTATGTGCTGATTGTCACGAAA
Shewanella halifaxensis HAW-EB4 Shal_0849 -117 4.4 TAGTGTGCTAGACCTCACGAAA
Shewanella piezotolerans WP3 swp_4239 -248 4.2 TAACGTGCTAAAGCTCACGAAA
Shewanella sediminis HAW-EB3 Ssed_0879 -117 4.1 TAACGTGTTCCTTGTCACGAAT
Shewanella woodyi ATCC 51908 Swoo_0881 -116 3.7 ATATGAGCGCTAAATCACGCTT
Position: -161
Score: 4
Sequence: ATAAGCGATATAGCTCCCAATA
Locus tag: swp_4263
swp_4263 -161 4 ATAAGCGATATAGCTCCCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0919
Ortholog function: Serine transporter, putative
Shewanella sp ANA-3 Shewana3_3365 -307 3.9 TTAATTGAAGCTGGTCGCATTT
Shewanella loihica PV-4 Shew_0739 -188 3.9 AAGTTAGATTCGGCTCACAAAG
Shewanella piezotolerans WP3 swp_4263 -161 4 ATAAGCGATATAGCTCCCAATA
Shewanella woodyi ATCC 51908 Swoo_0863 -196 4.2 AACTGAGAGGTGGATCACATTG
Position: -180
Score: 4.3
Sequence: TTTAGTGATAGAGCACACAGAA
Locus tag: swp_4302
swp_4302 -180 4.3 TTTAGTGATAGAGCACACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4302
Ortholog function: hypothetical protein
Shewanella pealeana ATCC 700345 Spea_2293 -183 4.4 AAGCGTGATTGACCACACAAAA
Shewanella halifaxensis HAW-EB4 Shal_2000 -182 4.5 AATCGTGATAAACCACACAAAA
Shewanella piezotolerans WP3 swp_4302 -180 4.3 TTTAGTGATAGAGCACACAGAA
Shewanella woodyi ATCC 51908 Swoo_2973 -185 4 TTCAGTGATGTAGAACTCAAAA
Position: -322
Score: 3.9
Sequence: TAATGCAATTGGTATTACAATA
Locus tag: swp_4339
swp_4339 -322 3.9 TAATGCAATTGGTATTACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0834
Ortholog function: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Shewanella sp ANA-3 Shewana3_0799 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-4 Shewmr4_3139 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-7 Shewmr7_0827 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella denitrificans OS217 Sden_3048 -175 4 TAATGTGATTGGTATAAGAACA
Shewanella pealeana ATCC 700345 Spea_0738 -161 4.3 TATCGATATCTGCCTCACATAT
-7 3.8 ATTTATTATGGAAGTCCCATTT
Shewanella piezotolerans WP3 swp_4339 -322 3.9 TAATGCAATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0917 -67 3.7 TATTTTTACTTGCCTCAACTAA
Position: -242
Score: 3.7
Sequence: AAATCAAACATAGATCACATTT
Position: -69
Score: 3.8
Sequence: AGGCATGACTTAGATCACGAAA
Position: -4
Score: 4.6
Sequence: TACTGTGATCGATATCACGTCT
Locus tag: swp_4346
swp_4346 -242 3.7 AAATCAAACATAGATCACATTT
-69 3.8 AGGCATGACTTAGATCACGAAA
-4 4.6 TACTGTGATCGATATCACGTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3987 -83 3.9 TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32 Sputcn32_0679 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1 Sputw3181_3492 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3 Shewana3_0651 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4 Shewmr4_0652 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7 Shewmr7_3370 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155 Sbal_0787 -277 3.7 TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B Sama_0602 -307 4.1 AAATTGAATATGGATCACATTT
Shewanella loihica PV-4 Shew_0778 -147 5.1 AGATTTGATGTAAATCACATTT
-82 4.4 TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345 Spea_0734 -147 4.1 CGATATGATTTGGATCACTTTT
-82 4.2 AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4 Shal_0787 -81 4.9 AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3 swp_4346 -4 4.6 TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3 Ssed_0816 -321 3.9 AAACTCAATATAGTTCACATTT
-147 3.9 GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908 Swoo_3763 -82 4.3 TTGTGTGACCTGCATCACGCCA
Position: -104
Score: 4.1
Sequence: AACCTTGATCTTAATCATAATT
Locus tag: swp_4367
swp_4367 -104 4.1 AACCTTGATCTTAATCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein
Shewanella denitrificans OS217 Sden_0638 -116 4 TTCTTTGATGTTAATCAAGCAT
Shewanella frigidimarina NCIMB 400 Sfri_4035 -131 3.8 ATATGTGACATACGCATCATAA
Shewanella amazonensis SB2B Sama_0589 -108 3.8 TTTGTTGATCTGGATCATTAAT
Shewanella loihica PV-4 Shew_3120 -108 4.2 TTTGTTGATCTTAATCAAAAAA
Shewanella pealeana ATCC 700345 Spea_0712 -106 4.4 ATTATTGATCTTTATCAAAAAA
Shewanella piezotolerans WP3 swp_4367 -104 4.1 AACCTTGATCTTAATCATAATT
Shewanella sediminis HAW-EB3 Ssed_3889 -107 4.2 TTTGTTGATCCTTATCAAAAAA
Shewanella woodyi ATCC 51908 Swoo_3788 -106 3.9 TTTGTTGATCTTAATCAAAAAC
Position: -64
Score: 4.1
Sequence: AAACGTGATCAACAGCATCTTT
Locus tag: swp_4510
swp_4510 -64 4.1 AAACGTGATCAACAGCATCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0777
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0777 -140 4.5 AAACTTGATTCGTGTCACACAA
Shewanella sp W3-18-1 Sputw3181_3398 -140 4.5 AAACTTGATTCGTGTCACACAA
Shewanella sp ANA-3 Shewana3_0738 -140 4.4 AAATTTGAACCACATCACACAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -129 4.2 TTTTGTGAGCTAATTGGCAATT
Shewanella amazonensis SB2B Sama_0549 -139 4.3 AAAGTTGATTCACATCAAATTA
Shewanella halifaxensis HAW-EB4 Shal_0680 -79 3.9 GTTTTTGACTAAGATCAAAAAA
Shewanella piezotolerans WP3 swp_4510 -64 4.1 AAACGTGATCAACAGCATCTTT
Shewanella woodyi ATCC 51908 Swoo_4146 -81 3.9 TTTATTGATCGAGATCAGCTTA
Position: -215
Score: 3.9
Sequence: ATGTGTGATATTAATCATAGGT
Locus tag: swp_4512
swp_4512 -215 3.9 ATGTGTGATATTAATCATAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32 Sputcn32_0780 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1 Sputw3181_3395 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3 Shewana3_0735 -308 4.5 AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4 Shewmr4_3226 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7 Shewmr7_0763 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155 Sbal_3568 -321 5 AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0504 -251 4 TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B Sama_0546 -214 4.8 AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4 Shew_3251 -226 4.6 AGGTGTGATCCGTGTCGCAAAT
-196 3.8 TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345 Spea_0591 -259 4.3 ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_0678 -253 4.8 GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3 swp_4512 -245 3.8 CGATGTGATCTTGATCTGGTTT
-215 3.9 ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3 Ssed_4007 -324 5 TTTTGTGATTCTTATCACGCAT
-294 4.6 TTGTGTGATATCAATCATCTTT
-200 3.8 TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908 Swoo_4150 -290 5.1 CTTTGTGATATCAATCACAATA
Position: -177
Score: 3.9
Sequence: ACCTATGATTAATATCACACAT
Locus tag: swp_4513
swp_4513 -177 3.9 ACCTATGATTAATATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shewana3_0734
Ortholog function: outer membrane porin, putative
Shewanella sp ANA-3 Shewana3_0734 -130 4.8 TCAAGTGATCAAGATCACATTT
Shewanella sp MR-4 Shewmr4_3227 -130 4 TCCAATGATCCAGATCACATTT
Shewanella sp MR-7 Shewmr7_0762 -130 4 TCCAATGATCCAGATCACATTT
Shewanella baltica OS155 Sbal_3569 -127 4.9 AAACTTGATCCAGATCACACTT
Shewanella amazonensis SB2B Sama_0545 -112 5.1 TGATGTGATAGTGATCACACTT
Shewanella loihica PV-4 Shew_3252 -193 3.8 CAACATGATAAAACTCACGTAA
-163 4.2 ATTTGCGACACGGATCACACCT
Shewanella piezotolerans WP3 swp_4513 -177 3.9 ACCTATGATTAATATCACACAT
Shewanella sediminis HAW-EB3 Ssed_4008 -223 4.3 AAAGATGATTGATATCACACAA
-193 4.8 ATGCGTGATAAGAATCACAAAA
Position: -220
Score: 3.6
Sequence: AATTGCTATTTTGATAACTAAA
Position: -150
Score: 4.1
Sequence: AAACTTGATCTAGCCCACAATC
Locus tag: swp_4514
swp_4514 -220 3.6 AATTGCTATTTTGATAACTAAA
-150 4.1 AAACTTGATCTAGCCCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: outer membrane porin
Shewanella oneidensis MR-1 SO3896 -67 4.1 AAATGTGTTAAACCACACAAAA
Shewanella sp ANA-3 Shewana3_0733 -67 4.1 AAATGTGTTAAACCACACAAAA
Shewanella sp MR-4 Shewmr4_3228 -67 3.7 AAATGTGTAAAACCACACAAAA
Shewanella sp MR-7 Shewmr7_0761 -67 3.7 AAATGTGTAAAACCACACAAAA
Shewanella baltica OS155 Sbal_3570 -67 3.6 AAATGCGTTAAACCACACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -145 4.5 TTATTTGATCTAGGCCACACTA
Shewanella loihica PV-4 Shew_3260 -150 4.1 AAATTTGATCTGCGCCACACTC
Shewanella pealeana ATCC 700345 Spea_0589 -150 4.4 AAACATGATCTAGTCCACAATT
Shewanella halifaxensis HAW-EB4 Shal_0676 -150 4.4 AAACATGATCTAGTCCACAATT
Shewanella piezotolerans WP3 swp_4514 -150 4.1 AAACTTGATCTAGCCCACAATC
Shewanella sediminis HAW-EB3 Ssed_4009 -151 4.4 AAACATGATCTAGTCCACAATT
Shewanella woodyi ATCC 51908 Swoo_4152 -241 3.3 AATTATTAACTCTTTCTTAAAT
Shewanella woodyi ATCC 51908 Swoo_4151 -149 4.3 AAGTTTGATCTAGTCCACAATC
Position: -133
Score: 4
Sequence: GAAAGTGATCGAGCTCAACTAT
Locus tag: swp_4577
swp_4577 -133 4 GAAAGTGATCGAGCTCAACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4142
Ortholog function: cytochrome c family protein
Shewanella oneidensis MR-1 SO4142 -121 3.9 GAAAGTGACACACCTCAAATAA
Shewanella sp ANA-3 Shewana3_3688 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-4 Shewmr4_3511 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-7 Shewmr7_0441 -122 4 GAAGGTGATACACCTCAAATAA
Shewanella frigidimarina NCIMB 400 Sfri_3554 -112 4 GGATATGATCTACTTCAAATTA
Shewanella amazonensis SB2B Sama_3178 -268 3.9 AAACGTCACATAGATCACACAC
Shewanella loihica PV-4 Shew_0516 -113 4.1 GAAGGTGATCAACATCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_0616 -289 3.8 AAGTGTGATCTAGATCTGTTAC
Shewanella piezotolerans WP3 swp_4577 -133 4 GAAAGTGATCGAGCTCAACTAT
Shewanella sediminis HAW-EB3 Ssed_4058 -112 4.7 AAAGGTGATCAACATCAAATTT
Position: -9
Score: 4.4
Sequence: ATATTTGATATGTACCACCTTA
Locus tag: swp_4588
swp_4588 -9 4.4 ATATTTGATATGTACCACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4154
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO4154 -69 3.7 AATTGTGCATTAGTTAATCTAT
-9 4.9 TAATTTGATATGTATCATATAA
Shewanella sp ANA-3 Shewana3_3695 -9 4.3 TAATTTGATATGTACCATATAA
Shewanella loihica PV-4 Shew_0506 -30 3.9 TATTGAAATCATTTTCAAAAAA
-9 4 ATTTTTGATATGTATCATCTCA
Shewanella piezotolerans WP3 swp_4588 -9 4.4 ATATTTGATATGTACCACCTTA
Shewanella sediminis HAW-EB3 Ssed_4064 -9 4.4 ATATTTGATATGTATCACCTCA
Shewanella woodyi ATCC 51908 Swoo_0591 -9 4.2 ATTTTTGACATGTATCACCTCA
Position: -246
Score: 4.1
Sequence: TTATGTGCTCTAGCGCATGTTT
Locus tag: swp_4657
swp_4657 -246 4.1 TTATGTGCTCTAGCGCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mccA
Ortholog function: cytochrome c, putative
Shewanella pealeana ATCC 700345 Spea_0503 -286 3.9 TTTTGCGATTTAAAAAACGTAA
-264 3.9 AGTTGTGATTTTTATATCTAAA
Shewanella halifaxensis HAW-EB4 Shal_0567 -284 3.8 TTTTGCGATTCAAAAAACGTTA
-262 3.9 AGTTGTGATTTTTATATCTAAA
-159 4.1 AAGTGTGCTGTAGCGCAGATTT
Shewanella piezotolerans WP3 swp_4657 -246 4.1 TTATGTGCTCTAGCGCATGTTT
Shewanella sediminis HAW-EB3 Ssed_0493 -324 4 TATTGTGACCCACTCAAGATTT
-233 3.7 TTTTTTGAAATGTTTAACCTAC
-158 4.2 AAGTGTGCTTTGAAGCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4456 -160 4 AAGTGTGCTTTAGCGCAGATTT
Position: -310
Score: 4.7
Sequence: ATTTGTGAGTTAGATCATGTTT
Position: -92
Score: 4.6
Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: swp_4702
swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -88
Score: 4.8
Sequence: AAACATGATCTAACTCACAAAT
Locus tag: swp_4703
swp_4703 -88 4.8 AAACATGATCTAACTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4134
Ortholog function: Protein of unknown function DUF465
Shewanella oneidensis MR-1 SO4134 -91 4.7 AATATTGATCCAGATCACGTTT
Shewanella putrefaciens CN-32 Sputcn32_0542 -89 4.7 AATATTGATCTAAGTCACAATT
Shewanella sp W3-18-1 Sputw3181_3630 -89 4.7 AATATTGATCTAAGTCACAATT
Shewanella sp ANA-3 Shewana3_3681 -91 4.6 AATATTGATCCATATCACGTTT
Shewanella sp MR-4 Shewmr4_3506 -205 4 AAGTGTGAGCCAGATCTAACTC
-91 4.6 AATATTGATCCAAATCACGTTT
Shewanella sp MR-7 Shewmr7_0446 -205 4 AAGTGTGAGCCAGATCTAACTC
-91 4.6 AATATTGATCCAAATCACGTTT
Shewanella baltica OS155 Sbal_3853 -206 3.8 AAGTGTGAACCAGATCCTAATC
-92 5 AAGAGTGATCTAAGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3404 -219 4.7 TAACGTGATTTACATCAAGTTA
-81 3.8 CATTGTTATTGGAATAACATCT
Shewanella amazonensis SB2B Sama_0411 -89 4.5 CTTAGTGATCCGGATCACTTTT
Shewanella pealeana ATCC 700345 Spea_0459 -99 4.9 CTATTTGATCGATATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_0534 -97 4.6 CAATTTGATCGATATCACGTTT
Shewanella piezotolerans WP3 swp_4703 -306 4 TAAGGTTAACCTGATCACACTT
-88 4.8 AAACATGATCTAACTCACAAAT
Position: -181
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: swp_4724
swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -245
Score: 3.9
Sequence: TTATGTGATTAATCTCAGTGTT
Position: -139
Score: 4.9
Sequence: AAGTGTGATCTGATTCATACTT
Locus tag: swp_4740
swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1 SO0432 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32 Sputcn32_3409 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1 Sputw3181_0534 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3 Shewana3_0433 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4 Shewmr4_0437 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7 Shewmr7_3592 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155 Sbal_3905 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217 Sden_3377 -139 4.1 CAGTGTGAGCCGATTCATACTT
-67 3.9 AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400 Sfri_3771 -139 4.6 TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4 Shew_3424 -140 4.3 GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345 Spea_0425 -268 4 TTATATAATTTAGATCAAGTTT
-160 4.8 AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4 Shal_0482 -247 3.7 TTATATAATTTAGATCAAGGTT
-139 5 AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3 swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3 Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908 Swoo_0285 -139 4.4 GAGTGTGATCTGATTCAAACTT
Position: -283
Score: 4.4
Sequence: AAGTATGAATCAGATCACACTT
Locus tag: swp_4741
swp_4741 -283 4.4 AAGTATGAATCAGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1 SO0431 -302 3.9 AAGTATGAATCAGGTCACACTC
-118 3.8 TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_3410 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1 Sputw3181_0533 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3 Shewana3_0432 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4 Shewmr4_0436 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7 Shewmr7_3593 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155 Sbal_3906 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217 Sden_3378 -316 4 AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400 Sfri_3772 -288 4.3 AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B Sama_0381 -255 4 AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4 Shew_3425 -295 4.1 AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345 Spea_0424 -286 4.3 AAGTATGAATCCGATCACACTT
-178 4.1 AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4 Shal_0481 -286 4.5 AAGTATGAATCCGATCACATTT
-178 3.7 AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3 swp_4741 -283 4.4 AAGTATGAATCAGATCACACTT
-177 3.7 AACACTGAGATTAATCACATAA
-101 3.7 TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3 Ssed_0437 -296 4.2 AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908 Swoo_0284 -296 4.2 AAGTTTGAATCAGATCACACTC
Position: -113
Score: 4.5
Sequence: GATTGTGATCAGTATCAAACAA
Locus tag: swp_4749
swp_4749 -113 4.5 GATTGTGATCAGTATCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Shewanella oneidensis MR-1 SO0426 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella putrefaciens CN-32 Sputcn32_3415 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp W3-18-1 Sputw3181_0528 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp ANA-3 Shewana3_0428 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp MR-4 Shewmr4_0430 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella sp MR-7 Shewmr7_3597 -113 4.7 TATTGTGATCAGTATCAAACAC
Shewanella baltica OS155 Sbal_3911 -111 4.7 TATTGTGATCAGTATCAAACAC
Shewanella frigidimarina NCIMB 400 Sfri_3775 -168 5.1 TATTGTGATCGGTTTCAAACAA
Shewanella pealeana ATCC 700345 Spea_0421 -128 4.5 GATTGTGATCAGCATCAAACAA
Shewanella halifaxensis HAW-EB4 Shal_0478 -130 4.6 GATTGTGATCCGTATCAAACAA
Shewanella piezotolerans WP3 swp_4749 -113 4.5 GATTGTGATCAGTATCAAACAA
Position: -217
Score: 4.4
Sequence: ATTCGTGCTGAAAATCAAATTT
Locus tag: swp_4772
swp_4772 -217 4.4 ATTCGTGCTGAAAATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilZ
Ortholog function: type IV pilus assembly PilZ
Shewanella pealeana ATCC 700345 Spea_3949 -129 5.2 AATTGTGATGAAAATCAAATTA
Shewanella halifaxensis HAW-EB4 Shal_0318 -195 4.3 ATATTTGCTAGACATCACATTG
-141 5 ATTCGTGATGGAAATCAAATTA
Shewanella piezotolerans WP3 swp_4772 -217 4.4 ATTCGTGCTGAAAATCAAATTT
Position: -74
Score: 4.3
Sequence: ATATTTGATTCATCTCATATAC
Locus tag: swp_4791
swp_4791 -74 4.3 ATATTTGATTCATCTCATATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4567
Ortholog function: transcriptional regulator, AsnC family
Shewanella piezotolerans WP3 swp_4791 -74 4.3 ATATTTGATTCATCTCATATAC
Position: -276
Score: 3.8
Sequence: ATTTGAGATCTAAAAAAAAATA
Locus tag: swp_4806
swp_4806 -276 3.8 ATTTGAGATCTAAAAAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cymA
Ortholog function: membrane anchored tetraheme cytochrome c, CymA
Shewanella oneidensis MR-1 SO4591 -307 4 AAATGTCGCCTTGATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_0286 -306 4.7 AAGTGTGCTATCGGTCACAATT
Shewanella sp W3-18-1 Sputw3181_3916 -306 4.1 AAGTGTGCCATCGATTACAATT
Shewanella sp ANA-3 Shewana3_3977 -309 4 AAATGTCGCGTGGATCACATTT
Shewanella sp MR-4 Shewmr4_3777 -308 4.3 AAATGTCGTCTTGATCACATTT
Shewanella sp MR-7 Shewmr7_3850 -318 4.5 AAATGTAGTGTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0272 -146 4.3 AGTCGAGATCTAGCTCGCATTT
Shewanella loihica PV-4 Shew_3540 -169 4.2 TATTATGAGCAATTTCATAAAA
Shewanella piezotolerans WP3 swp_4806 -276 3.8 ATTTGAGATCTAAAAAAAAATA
Shewanella sediminis HAW-EB3 Ssed_0216 -86 3.7 CAGTATGATCTAGTTTATAATT
Shewanella woodyi ATCC 51908 Swoo_0195 -152 4.3 AATTTTTATATTTATCAAAATA
Position: 17
Score: 3.8
Sequence: TTGTGTGTTGGCGCTAATATTT
Locus tag: swp_4823
swp_4823 17 3.8 TTGTGTGTTGGCGCTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4606
Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewanella oneidensis MR-1 SO4606 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3782 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp W3-18-1 Sputw3181_0133 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp ANA-3 Shewana3_3991 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-4 Shewmr4_3791 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-7 Shewmr7_3864 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella baltica OS155 Sbal_0154 -317 4.4 ATAAGTGATCTTGATCAATATT
Shewanella denitrificans OS217 Sden_3517 -316 4.4 AAAAGTGATCTTGATCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_0258 -321 3.9 CAAAGTGATCTTGATCAATGTT
Shewanella amazonensis SB2B Sama_3483 -318 4.4 TAAAGTGATCTTGATCAATATT
Shewanella loihica PV-4 Shew_0125 -321 4.4 AAAAGTGATCTTGATCAATATT
-264 4 TTATTTGTTATATCGCACAATT
Position: -131
Score: 3.8
Sequence: AAATGTGATCAGAACTGCGTTA
Locus tag: swp_4841
swp_4841 -131 3.8 AAATGTGATCAGAACTGCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhgI
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1 SO4619 -129 3.9 AATCGTGATCACTATGGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_3794 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp W3-18-1 Sputw3181_0119 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp ANA-3 Shewana3_4003 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-4 Shewmr4_3804 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-7 Shewmr7_3880 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella baltica OS155 Sbal_0142 -129 4 AATCGTGATCGCTATGGCAAAA
Shewanella piezotolerans WP3 swp_4841 -131 3.8 AAATGTGATCAGAACTGCGTTA
Position: -311
Score: 3.7
Sequence: ATTTGCGAGGCGCTTTGCAATA
Position: -261
Score: 3.6
Sequence: AAAATTGACTTTAGTCAAAGAT
Locus tag: swp_4926
swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prlC
Ortholog function: Oligopeptidase A (EC 3.4.24.70)
Shewanella oneidensis MR-1 SO4699 -136 4.2 AATTGAGAACTGGCTCACTTTT
Shewanella putrefaciens CN-32 Sputcn32_0087 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp W3-18-1 Sputw3181_3978 -178 4.3 AATTGAGAACTAGTTCACTTTT
Shewanella sp ANA-3 Shewana3_4051 -136 4.6 AATTGTGAACTGGTTCGCTTTT
Shewanella sp MR-4 Shewmr4_3842 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella sp MR-7 Shewmr7_3935 -136 4.3 AATTGTGAACTGAGTCGCTTTT
Shewanella baltica OS155 Sbal_0124 -136 4.3 AAATGCGAACGAGTTCACTTTT
Shewanella frigidimarina NCIMB 400 Sfri_3874 -226 4 AATTGGGATCTTAGTCACTCTA
Shewanella loihica PV-4 Shew_3657 -247 3.8 ATTTGCGATCCGCTTGGCAATA
Shewanella pealeana ATCC 700345 Spea_4065 -143 3.9 AAACTTGATTAAGATCGCGGAT
Shewanella halifaxensis HAW-EB4 Shal_0193 -192 4.4 ATTTGCGACGTGGTTTACAATA
-142 4.2 AAATTTGATCTAGATCCTAGAT
Shewanella piezotolerans WP3 swp_4926 -311 3.7 ATTTGCGAGGCGCTTTGCAATA
-261 3.6 AAAATTGACTTTAGTCAAAGAT
Shewanella sediminis HAW-EB3 Ssed_0145 -210 4.1 ATTTGAGAAGTAATTCTCAATA
Shewanella woodyi ATCC 51908 Swoo_0124 -172 4.2 TTTTTTGAGCTGGGTCAAAGTA
Position: -104
Score: 3.7
Sequence: TATTGCAAAGCGCCTCGCAAAT
Locus tag: swp_4927
swp_4927 -104 3.7 TATTGCAAAGCGCCTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4700 -154 4.5 AAAAGTGAGCCAGTTCTCAATT
Shewanella putrefaciens CN-32 Sputcn32_0086 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp W3-18-1 Sputw3181_3979 -153 4.5 AAAAGTGAACTAGTTCTCAATT
Shewanella sp ANA-3 Shewana3_4052 -154 4.3 AAAAGCGAACCAGTTCACAATT
Shewanella sp MR-4 Shewmr4_3843 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella sp MR-7 Shewmr7_3936 -95 4.4 AAAAGCGACTCAGTTCACAATT
Shewanella baltica OS155 Sbal_0123 -154 4.6 AAAAGTGAACTCGTTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -148 4 TAGAGTGACTAAGATCCCAATT
Shewanella loihica PV-4 Shew_3658 -101 3.6 TATTGCCAAGCGGATCGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_0192 -105 4.2 TATTGTAAACCACGTCGCAAAT
Shewanella piezotolerans WP3 swp_4927 -104 3.7 TATTGCAAAGCGCCTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_0144 -115 4.2 TATTGAGAATTACTTCTCAAAT
Shewanella woodyi ATCC 51908 Swoo_0123 -153 4.3 TACTTTGACCCAGCTCAAAAAA
-78 3.9 AAGCGTTATCATTTACACATTA
Position: -140
Score: 4.4
Sequence: TTTCGTGAGCTTGTTCGAATAA
Position: -80
Score: 4.3
Sequence: TAATGTGCCCCAAGTTACATTT
Locus tag: swp_4930
swp_4930 -140 4.4 TTTCGTGAGCTTGTTCGAATAA
-80 4.3 TAATGTGCCCCAAGTTACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: swp_4930
Ortholog function: transcriptional regulator, LysR family
Shewanella frigidimarina NCIMB 400 Sfri_2509 -114 3.9 TATTGTGACATATAGATAATAT
Shewanella pealeana ATCC 700345 Spea_4030 -80 3.8 TATTGTGGCCATAGTTACATTT
Shewanella halifaxensis HAW-EB4 Shal_0228 -81 4.3 TATTGTGCTCACAGTTACATTT
Shewanella piezotolerans WP3 swp_4930 -80 4.3 TAATGTGCCCCAAGTTACATTT
Shewanella sediminis HAW-EB3 Ssed_3221 -77 4.4 TATTGTGCGCCTGATTACATAT
Position: -269
Score: 4.7
Sequence: AAGTGTGACGAACATAACATTA
Locus tag: swp_4939
swp_4939 -269 4.7 AAGTGTGACGAACATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fixA
Ortholog function: electron transfer flavoprotein, beta subunit FixA
Shewanella loihica PV-4 Shew_2677 -234 4.2 AAATGTGAAGCGTGTAACATCA
Shewanella pealeana ATCC 700345 Spea_4039 -267 5.2 TTGTGTGATCTGTATAACATTA
Shewanella halifaxensis HAW-EB4 Shal_0219 -274 4.8 AAGTGTGACACACATAACATTA
Shewanella piezotolerans WP3 swp_4939 -269 4.7 AAGTGTGACGAACATAACATTA
Shewanella sediminis HAW-EB3 Ssed_3230 -306 4.8 AAGTGTGACCCGCCTAACATTA
Position: -222
Score: 4.3
Sequence: TGAGGTGATTAGTGTCACAAAA
Locus tag: swp_5009
swp_5009 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0389 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0243 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0274 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0273 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3748 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0284 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0101 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0082 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3524 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0087 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4120 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0122 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5009 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4402 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4793 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -176
Score: 4.4
Sequence: TTTTGTGACACTAATCACCTCA
Locus tag: swp_5010
swp_5010 -176 4.4 TTTTGTGACACTAATCACCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella oneidensis MR-1 SO4453 -171 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp W3-18-1 Sputw3181_0242 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp ANA-3 Shewana3_0273 -175 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella sp MR-4 Shewmr4_0272 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella sp MR-7 Shewmr7_3749 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella baltica OS155 Sbal_0283 -170 4.4 ATCTGTGACAGTCCTCACCTAA
Shewanella denitrificans OS217 Sden_0100 -130 4.6 TTTTGTGACACAGCTCACCTCA
Shewanella frigidimarina NCIMB 400 Sfri_0081 -159 4.7 ATTTGTGACTCGACTCACGCTA
Shewanella amazonensis SB2B Sama_3523 -157 4.3 AATTGTGACGCCGCTCACTCAG
Shewanella loihica PV-4 Shew_0086 -148 4.5 TAATGTGACACCGCTCACGAAG
Shewanella pealeana ATCC 700345 Spea_4121 -181 4.1 TTTTGTGACAGTTATCACGGCA
Shewanella halifaxensis HAW-EB4 Shal_0121 -180 4.2 TTTTGTGACAGTTATCACGCCA
Shewanella piezotolerans WP3 swp_5010 -176 4.4 TTTTGTGACACTAATCACCTCA
Shewanella sediminis HAW-EB3 Ssed_4403 -150 4.8 TTTTGTGACACCCCTCACATAC
Shewanella woodyi ATCC 51908 Swoo_4794 -135 4.7 TTTTGTGACGACACTCACATTC
Position: -166
Score: 4.2
Sequence: AAGTATGACTTACTTAACAAAA
Locus tag: swp_5018
swp_5018 -166 4.2 AAGTATGACTTACTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1 SO4520 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3506 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0400 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3 Shewana3_3926 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4 Shewmr4_3730 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7 Shewmr7_3801 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155 Sbal_0219 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -182 4.4 AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B Sama_3604 -171 3.9 AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4 Shew_0073 -182 4.1 AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345 Spea_4126 -164 4.4 AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0116 -164 4.2 AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3 swp_5018 -166 4.2 AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_4414 -203 4 AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4806 -184 4 AAACATGACTCGCTTAACAAAA
Position: -86
Score: 4.2
Sequence: AAGTGTGATCTGCAGCTAACTT
Position: -25
Score: 4
Sequence: AAAGGTAATTGAAATCTCATAA
Locus tag: swp_5036
swp_5036 -86 4.2 AAGTGTGATCTGCAGCTAACTT
-25 4 AAAGGTAATTGAAATCTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32 Sputcn32_0343 -187 4 AAGTTTGAAGTAGATCATCAAA
-91 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1 Sputw3181_3865 -131 4 AAGTTTGAAGTAGATCATCAAA
-35 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3 Shewana3_3910 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-4 Shewmr4_3714 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-7 Shewmr7_3785 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella baltica OS155 Sbal_4130 -187 4 TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400 Sfri_0051 -139 3.7 AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B Sama_3619 -186 3.9 AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4 Shew_0053 -190 4 TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345 Spea_4143 -183 4.2 TAGTTTGAACTAGATCAACTAT
-87 3.9 AAGTGTGATCGACCACTAACTT
-20 3.9 TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -181 4.2 TAGTTTGAACTAGATCAACTAT
-85 4.5 AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3 swp_5036 -86 4.2 AAGTGTGATCTGCAGCTAACTT
-25 4 AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3 Ssed_4427 -153 3.9 TAACTTGAGCTGGATCATCAAT
-59 3.8 TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -163 4.3 TTTTTTGAGCTAGATCATCAAA
Position: -96
Score: 4.7
Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: swp_5074a
swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: swp_5075
swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -117
Score: 4.3
Sequence: TGTTGTGCGCGAGTTCACATTG
Locus tag: swp_5150
swp_5150 -117 4.3 TGTTGTGCGCGAGTTCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: ferrichrome-iron receptor
Shewanella oneidensis MR-1 SO4743 -164 4.9 AATTTTGATCTGTATCACGCAA
Shewanella putrefaciens CN-32 Sputcn32_3953 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp W3-18-1 Sputw3181_4050 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp MR-4 Shewmr4_3922 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella sp MR-7 Shewmr7_4014 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_4042 -116 4.7 ATTTTTGATATATATCACAGTC
Shewanella halifaxensis HAW-EB4 Shal_4287 -46 3.8 TATTGCGACTCAATTAATACAT
Shewanella piezotolerans WP3 swp_5150 -117 4.3 TGTTGTGCGCGAGTTCACATTG
Shewanella woodyi ATCC 51908 Swoo_4894 -91 3.8 CTTTTTGATCTTTATCTAGTTT
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