Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_3004
Regulated genes 154
Built upon 2713 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -193
Score: 3.8
Sequence: TGCTGTGCAGTGTATCACAAAG
Locus tag: Sama_0032
Sama_0032 -193 3.8 TGCTGTGCAGTGTATCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadB
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewanella oneidensis MR-1 SO0021 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp W3-18-1 Sputw3181_0013 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella sp ANA-3 Shewana3_0024 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-4 Shewmr4_0018 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella sp MR-7 Shewmr7_0016 -210 4.1 CTTTGTGCAGTGTATCACAAAG
Shewanella baltica OS155 Sbal_0021 -210 3.7 CTCTGTGCAGTGTATCACAAAG
Shewanella amazonensis SB2B Sama_0032 -193 3.8 TGCTGTGCAGTGTATCACAAAG
Shewanella pealeana ATCC 700345 Spea_0018 -134 4.6 TTTTGTGATTCGTCGCACACTG
Shewanella halifaxensis HAW-EB4 Shal_0016 -134 4.4 TTTTGTGATTAGTCGCACACTG
Shewanella piezotolerans WP3 swp_0035 -127 4.4 TTATGTGATTAGTCGCACACTG
Position: -109
Score: 4
Sequence: CTTTGTGATACACTGCACAGCA
Locus tag: Sama_0033
Sama_0033 -109 4 CTTTGTGATACACTGCACAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Shewanella oneidensis MR-1 SO0022 -237 4.4 CTTTGTGATACACTGCACAAAG
Shewanella putrefaciens CN-32 Sputcn32_0014 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp W3-18-1 Sputw3181_0014 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella sp ANA-3 Shewana3_0025 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-4 Shewmr4_0019 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella sp MR-7 Shewmr7_0017 -255 4.4 CTTTGTGATACACTGCACAAAG
Shewanella baltica OS155 Sbal_0022 -302 4.2 CTTTGTGATACACTGCACAGAG
Shewanella amazonensis SB2B Sama_0033 -109 4 CTTTGTGATACACTGCACAGCA
Shewanella pealeana ATCC 700345 Spea_0019 -252 4.1 CAGTGTGCGACGAATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0017 -250 4 CAGTGTGCGACTAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0024 -48 3.8 TTTTCTGATAGATTTTACATCA
Position: -95
Score: 3.7
Sequence: AAATATTGCCCCGATCACATAT
Locus tag: Sama_0091
Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -96
Score: 4.1
Sequence: ATATGTGATCGGGGCAATATTT
Locus tag: Sama_0092
Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -137
Score: 4.6
Sequence: TTTTGTGATGTGGATTAGAAAT
Locus tag: Sama_0142
Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1 SO0141 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32 Sputcn32_0133 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1 Sputw3181_3939 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3 Shewana3_0133 -163 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4 Shewmr4_0134 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7 Shewmr7_0128 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4220 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4221 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4 Shew_0041 -55 4 TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3 swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3 Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4765 -240 4 AATCGTGACTTAGATTAGACTT
Position: -145
Score: 4.1
Sequence: TTTTCAGATCCGGCTCACACAT
Locus tag: Sama_0165
Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -207
Score: 3.8
Sequence: TTTTGTGAGTTCCCTCCCAGCT
Locus tag: Sama_0245
Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -225
Score: 4
Sequence: CAATTTGATGCAGTTCCAATAA
Locus tag: Sama_0246
Sama_0246 -225 4 CAATTTGATGCAGTTCCAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: scyA
Ortholog function: cytochrome c-type protein
Shewanella oneidensis MR-1 SO0264 -234 4 CAATTTGATATGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3726 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_0189 -229 4 CAATTTGATGTGGTTCCAATAA
-129 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella sp ANA-3 Shewana3_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-4 Shewmr4_0232 -234 4 CAATTTGATGTGGTTCCAATAA
-125 4.1 TGCTGAGATTCTAATCACAAAA
Shewanella sp MR-7 Shewmr7_0227 -234 4 CAATTTGATGTGGTTCCAATAA
-125 3.7 CGCTGAGATTCTAATCACAAAA
Shewanella baltica OS155 Sbal_0229 -228 3.9 CAATATGATGTGGTTCCAATAA
-128 4.5 TGTTGAGATTCTAATCACAAAA
Shewanella denitrificans OS217 Sden_3568 -131 3.8 AGCTGGGAGGCTTATCACAAAA
-109 4.1 AGGTGTGATTTTATTAACTTTA
Shewanella frigidimarina NCIMB 400 Sfri_0180 -233 3.9 CAATTTGATATGGTTCCAAAAT
-133 4.1 AGCTGAGATTGTTATCACAAAA
Shewanella amazonensis SB2B Sama_0246 -225 4 CAATTTGATGCAGTTCCAATAA
Shewanella loihica PV-4 Shew_0191 -242 3.8 CAATTTGATATGCTTCCAAAAA
-131 4.8 AATTCTGATATTAATCACAAAA
Shewanella pealeana ATCC 700345 Spea_0216 -230 4.4 CAATTTGATGTAGTTCGAATAT
-130 4 TGGCGAGATTAATATCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_4103 -230 4.4 CAATTTGATGTAGTTCGAATAT
Shewanella piezotolerans WP3 swp_2044 -231 4.4 CAATTTGATGTAGTTCGAATAT
-131 4.8 TAACGCGATTTAAATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_4286 -145 4.4 AGCTTTGATTGAAATCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4658 -256 3.8 CAATTTGATATGCTTCCAAAAA
-144 3.9 TACTTTGATTAAAGTCATAAAA
Position: -255
Score: 4
Sequence: AAGTATGAATCAGCTCACACTC
Locus tag: Sama_0381
Sama_0381 -255 4 AAGTATGAATCAGCTCACACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yniC
Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewanella oneidensis MR-1 SO0431 -302 3.9 AAGTATGAATCAGGTCACACTC
-118 3.8 TAACGAAATGCTTTTCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_3410 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp W3-18-1 Sputw3181_0533 -316 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp ANA-3 Shewana3_0432 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-4 Shewmr4_0436 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella sp MR-7 Shewmr7_3593 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella baltica OS155 Sbal_3906 -315 3.9 AAGTATGAATCAGGTCACACTC
Shewanella denitrificans OS217 Sden_3378 -316 4 AAGTATGAATCGGCTCACACTG
Shewanella frigidimarina NCIMB 400 Sfri_3772 -288 4.3 AAGTATGAATCAGCTCACACTA
Shewanella amazonensis SB2B Sama_0381 -255 4 AAGTATGAATCAGCTCACACTC
Shewanella loihica PV-4 Shew_3425 -295 4.1 AAGTATGAATCAGATCACACTC
Shewanella pealeana ATCC 700345 Spea_0424 -286 4.3 AAGTATGAATCCGATCACACTT
-178 4.1 AAACTTGATCTAAATTATATAA
Shewanella halifaxensis HAW-EB4 Shal_0481 -286 4.5 AAGTATGAATCCGATCACATTT
-178 3.7 AACCTTGATCTAAATTATATAA
Shewanella piezotolerans WP3 swp_4741 -283 4.4 AAGTATGAATCAGATCACACTT
-177 3.7 AACACTGAGATTAATCACATAA
-101 3.7 TTTCGTAAAGCTAAACACAATA
Shewanella sediminis HAW-EB3 Ssed_0437 -296 4.2 AAGTTTGAATCAGATCACACTC
Shewanella woodyi ATCC 51908 Swoo_0284 -296 4.2 AAGTTTGAATCAGATCACACTC
Position: -138
Score: 4
Sequence: GAGTGTGAGCTGATTCATACTT
Locus tag: Sama_0382
Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1 SO0432 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32 Sputcn32_3409 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1 Sputw3181_0534 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3 Shewana3_0433 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4 Shewmr4_0437 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7 Shewmr7_3592 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155 Sbal_3905 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217 Sden_3377 -139 4.1 CAGTGTGAGCCGATTCATACTT
-67 3.9 AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400 Sfri_3771 -139 4.6 TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4 Shew_3424 -140 4.3 GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345 Spea_0425 -268 4 TTATATAATTTAGATCAAGTTT
-160 4.8 AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4 Shal_0482 -247 3.7 TTATATAATTTAGATCAAGGTT
-139 5 AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3 swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3 Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908 Swoo_0285 -139 4.4 GAGTGTGATCTGATTCAAACTT
Position: -194
Score: 4
Sequence: TATTGTGAAATCACGCAGAAAA
Locus tag: Sama_0395
Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -89
Score: 4.5
Sequence: CTTAGTGATCCGGATCACTTTT
Locus tag: Sama_0411
Sama_0411 -89 4.5 CTTAGTGATCCGGATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4134
Ortholog function: Protein of unknown function DUF465
Shewanella oneidensis MR-1 SO4134 -91 4.7 AATATTGATCCAGATCACGTTT
Shewanella putrefaciens CN-32 Sputcn32_0542 -89 4.7 AATATTGATCTAAGTCACAATT
Shewanella sp W3-18-1 Sputw3181_3630 -89 4.7 AATATTGATCTAAGTCACAATT
Shewanella sp ANA-3 Shewana3_3681 -91 4.6 AATATTGATCCATATCACGTTT
Shewanella sp MR-4 Shewmr4_3506 -205 4 AAGTGTGAGCCAGATCTAACTC
-91 4.6 AATATTGATCCAAATCACGTTT
Shewanella sp MR-7 Shewmr7_0446 -205 4 AAGTGTGAGCCAGATCTAACTC
-91 4.6 AATATTGATCCAAATCACGTTT
Shewanella baltica OS155 Sbal_3853 -206 3.8 AAGTGTGAACCAGATCCTAATC
-92 5 AAGAGTGATCTAAGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3404 -219 4.7 TAACGTGATTTACATCAAGTTA
-81 3.8 CATTGTTATTGGAATAACATCT
Shewanella amazonensis SB2B Sama_0411 -89 4.5 CTTAGTGATCCGGATCACTTTT
Shewanella pealeana ATCC 700345 Spea_0459 -99 4.9 CTATTTGATCGATATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_0534 -97 4.6 CAATTTGATCGATATCACGTTT
Shewanella piezotolerans WP3 swp_4703 -306 4 TAAGGTTAACCTGATCACACTT
-88 4.8 AAACATGATCTAACTCACAAAT
Position: -92
Score: 4.7
Sequence: ATTCGTGATCCAGTTAACCTTA
Locus tag: Sama_0412
Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Shewanella oneidensis MR-1 SO4133 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella putrefaciens CN-32 Sputcn32_0543 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp W3-18-1 Sputw3181_3629 -230 4.4 AAGTTAGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp ANA-3 Shewana3_3680 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-4 Shewmr4_3505 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella sp MR-7 Shewmr7_0447 -92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella baltica OS155 Sbal_3852 -229 3.8 GATTAGGATCTGGTTCACACTT
-92 4.1 TTCTGTGATCAAGTTAACCTTC
Shewanella denitrificans OS217 Sden_3074 -92 4.4 AACTGTGATGAAGTTAACCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3403 -244 4.7 TAACTTGATGTAAATCACGTTA
-92 4.8 ATATGTGATCAAGTTAACCTTA
Shewanella amazonensis SB2B Sama_0412 -92 4.7 ATTCGTGATCCAGTTAACCTTA
Shewanella loihica PV-4 Shew_3390 -92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella pealeana ATCC 700345 Spea_0460 -92 4.7 AAGTGTGATCGGCTTAACCTTT
Shewanella halifaxensis HAW-EB4 Shal_0535 -92 4.6 AAGTGTGATCAGTTTAACCTTT
Shewanella piezotolerans WP3 swp_4702 -310 4.7 ATTTGTGAGTTAGATCATGTTT
-92 4.6 AAGTGTGATCAGGTTAACCTTA
Shewanella sediminis HAW-EB3 Ssed_0461 -92 4.7 AAGTGTGATCGAGCTAACCTTT
Shewanella sediminis HAW-EB3 Ssed_2504 -84 3.9 CAATGTAATATGCAAAACATTT
Shewanella woodyi ATCC 51908 Swoo_4509 -272 4.9 AAATGTGATGTGGGTCAACAAA
-92 4.7 AAGTGTGATCAAGTTAACCTTA
Position: -112
Score: 5.1
Sequence: TGATGTGATAGTGATCACACTT
Locus tag: Sama_0545
Sama_0545 -112 5.1 TGATGTGATAGTGATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shewana3_0734
Ortholog function: outer membrane porin, putative
Shewanella sp ANA-3 Shewana3_0734 -130 4.8 TCAAGTGATCAAGATCACATTT
Shewanella sp MR-4 Shewmr4_3227 -130 4 TCCAATGATCCAGATCACATTT
Shewanella sp MR-7 Shewmr7_0762 -130 4 TCCAATGATCCAGATCACATTT
Shewanella baltica OS155 Sbal_3569 -127 4.9 AAACTTGATCCAGATCACACTT
Shewanella amazonensis SB2B Sama_0545 -112 5.1 TGATGTGATAGTGATCACACTT
Shewanella loihica PV-4 Shew_3252 -193 3.8 CAACATGATAAAACTCACGTAA
-163 4.2 ATTTGCGACACGGATCACACCT
Shewanella piezotolerans WP3 swp_4513 -177 3.9 ACCTATGATTAATATCACACAT
Shewanella sediminis HAW-EB3 Ssed_4008 -223 4.3 AAAGATGATTGATATCACACAA
-193 4.8 ATGCGTGATAAGAATCACAAAA
Position: -214
Score: 4.8
Sequence: AAGTGTGATCACTATCACATCA
Locus tag: Sama_0546
Sama_0546 -214 4.8 AAGTGTGATCACTATCACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3895
Ortholog function: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewanella putrefaciens CN-32 Sputcn32_0780 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp W3-18-1 Sputw3181_3395 -317 4.9 AAATGCGATATAGATCACAAAC
Shewanella sp ANA-3 Shewana3_0735 -308 4.5 AAATGTGATCTTGATCACTTGA
Shewanella sp MR-4 Shewmr4_3226 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella sp MR-7 Shewmr7_0763 -309 3.9 AAATGTGATCTGGATCATTGGA
Shewanella baltica OS155 Sbal_3568 -321 5 AAGTGTGATCTGGATCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0504 -251 4 TATCTTGATGAGTTTAACCAAT
Shewanella amazonensis SB2B Sama_0546 -214 4.8 AAGTGTGATCACTATCACATCA
Shewanella loihica PV-4 Shew_3251 -226 4.6 AGGTGTGATCCGTGTCGCAAAT
-196 3.8 TTACGTGAGTTTTATCATGTTG
Shewanella pealeana ATCC 700345 Spea_0591 -259 4.3 ATGTGTGACGCTTGTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_0678 -253 4.8 GTTTGTGATGTCTATCACGTTT
Shewanella piezotolerans WP3 swp_4512 -245 3.8 CGATGTGATCTTGATCTGGTTT
-215 3.9 ATGTGTGATATTAATCATAGGT
Shewanella sediminis HAW-EB3 Ssed_4007 -324 5 TTTTGTGATTCTTATCACGCAT
-294 4.6 TTGTGTGATATCAATCATCTTT
-200 3.8 TTTTGTGAACTTGATTAACAAG
Shewanella woodyi ATCC 51908 Swoo_4150 -290 5.1 CTTTGTGATATCAATCACAATA
Position: -139
Score: 4.3
Sequence: AAAGTTGATTCACATCAAATTA
Locus tag: Sama_0549
Sama_0549 -139 4.3 AAAGTTGATTCACATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0777
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0777 -140 4.5 AAACTTGATTCGTGTCACACAA
Shewanella sp W3-18-1 Sputw3181_3398 -140 4.5 AAACTTGATTCGTGTCACACAA
Shewanella sp ANA-3 Shewana3_0738 -140 4.4 AAATTTGAACCACATCACACAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -129 4.2 TTTTGTGAGCTAATTGGCAATT
Shewanella amazonensis SB2B Sama_0549 -139 4.3 AAAGTTGATTCACATCAAATTA
Shewanella halifaxensis HAW-EB4 Shal_0680 -79 3.9 GTTTTTGACTAAGATCAAAAAA
Shewanella piezotolerans WP3 swp_4510 -64 4.1 AAACGTGATCAACAGCATCTTT
Shewanella woodyi ATCC 51908 Swoo_4146 -81 3.9 TTTATTGATCGAGATCAGCTTA
Position: -188
Score: 3.8
Sequence: TTTCCTGATCTTGATCAATAAA
Position: -128
Score: 4.7
Sequence: TAATTTGATGTGAATCAACTTT
Locus tag: Sama_0550
Sama_0550 -188 3.8 TTTCCTGATCTTGATCAATAAA
-128 4.7 TAATTTGATGTGAATCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3890
Ortholog function: methyl-accepting chemotaxis protein
Shewanella oneidensis MR-1 SO3890 -196 4.6 CCATGTGATCTGGTTCAAATTT
Shewanella putrefaciens CN-32 Sputcn32_0776 -185 4.4 TTGTGTGACACGAATCAAGTTT
Shewanella sp W3-18-1 Sputw3181_3399 -185 4.4 TTGTGTGACACGAATCAAGTTT
Shewanella sp ANA-3 Shewana3_0739 -181 4.9 CTGTGTGATGTGGTTCAAATTT
Shewanella sp MR-4 Shewmr4_3223 -198 4.3 CCCTGTGATCTAGCTCAAATTT
Shewanella sp MR-7 Shewmr7_0766 -198 4.3 CCCTGTGATCTAGCTCAAATTT
Shewanella baltica OS155 Sbal_3564 -196 3.7 CTCTGTGATCTTGGTCGTATTC
Shewanella amazonensis SB2B Sama_0550 -128 4.7 TAATTTGATGTGAATCAACTTT
Position: -108
Score: 3.8
Sequence: TTTGTTGATCTGGATCATTAAT
Locus tag: Sama_0589
Sama_0589 -108 3.8 TTTGTTGATCTGGATCATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein
Shewanella denitrificans OS217 Sden_0638 -116 4 TTCTTTGATGTTAATCAAGCAT
Shewanella frigidimarina NCIMB 400 Sfri_4035 -131 3.8 ATATGTGACATACGCATCATAA
Shewanella amazonensis SB2B Sama_0589 -108 3.8 TTTGTTGATCTGGATCATTAAT
Shewanella loihica PV-4 Shew_3120 -108 4.2 TTTGTTGATCTTAATCAAAAAA
Shewanella pealeana ATCC 700345 Spea_0712 -106 4.4 ATTATTGATCTTTATCAAAAAA
Shewanella piezotolerans WP3 swp_4367 -104 4.1 AACCTTGATCTTAATCATAATT
Shewanella sediminis HAW-EB3 Ssed_3889 -107 4.2 TTTGTTGATCCTTATCAAAAAA
Shewanella woodyi ATCC 51908 Swoo_3788 -106 3.9 TTTGTTGATCTTAATCAAAAAC
Position: -307
Score: 4.1
Sequence: AAATTGAATATGGATCACATTT
Locus tag: Sama_0602
Sama_0602 -307 4.1 AAATTGAATATGGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3987
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3987 -83 3.9 TCTTGTGAGCGAGTTCACGCCT
Shewanella putrefaciens CN-32 Sputcn32_0679 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp W3-18-1 Sputw3181_3492 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp ANA-3 Shewana3_0651 -83 4 TCTTGTGAGCCAGTTCACGCCT
Shewanella sp MR-4 Shewmr4_0652 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella sp MR-7 Shewmr7_3370 -83 4.1 TCTTGTGACCTAGTTCACGCCT
Shewanella baltica OS155 Sbal_0787 -277 3.7 TAAAGCGATATATGTAACAAAC
Shewanella amazonensis SB2B Sama_0602 -307 4.1 AAATTGAATATGGATCACATTT
Shewanella loihica PV-4 Shew_0778 -147 5.1 AGATTTGATGTAAATCACATTT
-82 4.4 TAAAGTGACCTGTCTCACACCT
Shewanella pealeana ATCC 700345 Spea_0734 -147 4.1 CGATATGATTTGGATCACTTTT
-82 4.2 AATAGTGATATACATCACAAGG
Shewanella halifaxensis HAW-EB4 Shal_0787 -81 4.9 AATAGTGATGCAGATCACACTG
Shewanella piezotolerans WP3 swp_4346 -4 4.6 TACTGTGATCGATATCACGTCT
Shewanella sediminis HAW-EB3 Ssed_0816 -321 3.9 AAACTCAATATAGTTCACATTT
-147 3.9 GGATATGATCTAAATCACACTG
Shewanella woodyi ATCC 51908 Swoo_3763 -82 4.3 TTGTGTGACCTGCATCACGCCA
Position: -112
Score: 4
Sequence: GGATGTGTTATTGTTCACACTT
Locus tag: Sama_0647
Sama_0647 -112 4 GGATGTGTTATTGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -174 3.7 AAGTTTGCGCTAGATCAAAATG
-151 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_0684 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3487 -114 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp ANA-3 Shewana3_0657 -138 3.7 AAGTTTGCGCTAGATCAAAATG
-115 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-4 Shewmr4_0658 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella sp MR-7 Shewmr7_3364 -139 3.7 AAGTTTGCGCTAGATCAAAATG
-116 4.5 AATAGTGTTGTTGTTCACACTT
Shewanella baltica OS155 Sbal_0793 -121 3.7 AAGTTTGCGCTAGATCAAAATG
-98 4.5 AAAGGTGTTGTTGTTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_0621 -140 3.9 AAACAGGATGTATCTCACAGTT
Shewanella amazonensis SB2B Sama_0647 -112 4 GGATGTGTTATTGTTCACACTT
Shewanella loihica PV-4 Shew_0843 -136 3.9 AAACTTGAGGCAGATCATAATG
-113 4.4 GAATGTGTTGTTGGTCACATTT
Shewanella pealeana ATCC 700345 Spea_0830 -109 4 GAACGTGTTGTTGCTCACACTT
-81 3.8 ATTTGTTAATGTAATCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_0885 -111 4.3 GAATGTGTTGTTGCTCACACTT
Shewanella sediminis HAW-EB3 Ssed_0930 -113 4.8 AAATGTGGTGTTGCTCACACTT
Shewanella woodyi ATCC 51908 Swoo_0971 -112 4.8 AAACGTGTTGTTGCTCACATTT
Position: -262
Score: 4
Sequence: ATTTGTGAGGTAGATCCTCAAA
Locus tag: Sama_0671
Sama_0671 -262 4 ATTTGTGAGGTAGATCCTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewanella oneidensis MR-1 SO0769 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella putrefaciens CN-32 Sputcn32_3220 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp W3-18-1 Sputw3181_0721 -259 4.2 ATGTGTGACATGGATCTAGTTT
Shewanella sp ANA-3 Shewana3_3510 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-4 Shewmr4_3340 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella sp MR-7 Shewmr7_0613 -266 4.5 ATGTGTGACATGGATCTAATTT
Shewanella baltica OS155 Sbal_0608 -270 4.5 ATGTGTGACATGGATCTAATTT
Shewanella amazonensis SB2B Sama_0671 -262 4 ATTTGTGAGGTAGATCCTCAAA
Shewanella loihica PV-4 Shew_0866 -282 4.6 TTATGTGATATAGATCTAGATT
Shewanella piezotolerans WP3 swp_4101 -140 3.8 ATTTATACTCTACATCATATTT
Shewanella sediminis HAW-EB3 Ssed_0951 -254 3.8 ATTTTTGTTCTACATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1001 -311 4.5 TTTTGTGATGTAGGTCTACATT
Position: -46
Score: 3.8
Sequence: TTTGAGGATCTACCTCACAAAT
Locus tag: Sama_0672
Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1 SO0770 -47 4.3 AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_3219 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1 Sputw3181_0722 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3 Shewana3_3509 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-4 Shewmr4_3339 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-7 Shewmr7_0614 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella baltica OS155 Sbal_0609 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_3173 -45 4.2 AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4 Shew_0867 -47 4.5 AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_0903 -46 3.9 AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3 swp_4100 -46 3.9 AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908 Swoo_1002 -47 3.8 AATGTAGACCTACATCACAAAA
Position: -102
Score: 4.2
Sequence: TGAATTGATTCAGATCACGTTA
Locus tag: Sama_0861
Sama_0861 -102 4.2 TGAATTGATTCAGATCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaC
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO1329 -162 4.7 TGTATTGATCCAGATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1140 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp W3-18-1 Sputw3181_3024 -101 4.7 TGTATTGATCCAGATCACAAAT
Shewanella sp ANA-3 Shewana3_3045 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-4 Shewmr4_2867 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella sp MR-7 Shewmr7_2949 -162 4.4 TGGATTGATCCAGATCACAAAT
Shewanella baltica OS155 Sbal_1182 -101 4.7 TAGATTGATCCAGATCACAAAT
Shewanella denitrificans OS217 Sden_2784 -157 4.8 TGAATTGATCTAGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2947 -158 4.4 TCTATTGATCTAAATCACAAAT
Shewanella amazonensis SB2B Sama_0861 -102 4.2 TGAATTGATTCAGATCACGTTA
Shewanella loihica PV-4 Shew_1036 -162 4.6 TCATTTGACTTAGATCACAAAT
Shewanella pealeana ATCC 700345 Spea_1019 -100 4.6 TCATTTGACTTAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_1065 -99 5.1 TTATTTGACTTAGATCACAAAT
Shewanella piezotolerans WP3 swp_3798 -98 4.6 TCATTTGACTTAGATCACAAAT
Shewanella sediminis HAW-EB3 Ssed_1130 -103 4.3 TCATTTGACAAAGATCACAAAT
Shewanella woodyi ATCC 51908 Swoo_1225 -96 4.3 TCATTTGACTAAGATCACAAAT
Position: -113
Score: 3.6
Sequence: TAAGATGATCTGCTTCAAGGAA
Locus tag: Sama_0895
Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO1363 -124 4.2 TAAAGTGATCTTTCTCTAAGAT
Shewanella putrefaciens CN-32 Sputcn32_1174 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp W3-18-1 Sputw3181_2990 -124 4.3 TAAGGTGATAACCCTCGCAAAT
Shewanella sp MR-4 Shewmr4_2832 -124 4 TAAGGTGATCTCCCTCTAAGAT
Shewanella sp MR-7 Shewmr7_2914 -124 3.6 CAAGGTGATCTCTCTCTAAGAT
Shewanella baltica OS155 Sbal_1216 -124 4.1 TAAGGTGATCGTTCTCTAATAT
Shewanella frigidimarina NCIMB 400 Sfri_3609 -125 4 GAAGGTGATGTGGCTCATAAAA
Shewanella amazonensis SB2B Sama_0895 -113 3.6 TAAGATGATCTGCTTCAAGGAA
Shewanella loihica PV-4 Shew_1069 -125 4.5 TAATTTGATCCGCTTCATAGTT
Shewanella pealeana ATCC 700345 Spea_1055 -125 4.5 AAAAGTGATCTCTTTCATAGTT
Shewanella halifaxensis HAW-EB4 Shal_1103 -96 4.3 TAAGGTGATCTCTTTCATGTTT
Shewanella piezotolerans WP3 swp_3762 -42 4.4 TAAGGTGATCTCTTTCATAGTT
Shewanella sediminis HAW-EB3 Ssed_1165 -170 3.4 TAATGCAATTGGTATTATAATT
Shewanella woodyi ATCC 51908 Swoo_1260 -125 4.2 GAATTTGATCTGTCTCAAACTT
Position: -78
Score: 4.3
Sequence: AAACGTGATTTTACTCACGACT
Locus tag: Sama_0899
Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -234
Score: 4.2
Sequence: AGTCGTGAGTAAAATCACGTTT
Locus tag: Sama_0900
Sama_0900 -234 4.2 AGTCGTGAGTAAAATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3421
Ortholog function: b-type cytochrome, putative
Shewanella oneidensis MR-1 SO3421 -244 4.2 AAACGAGAGTTAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2739 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp W3-18-1 Sputw3181_1273 -242 4.8 AAACGAGATCTAAATCACAAAA
Shewanella sp ANA-3 Shewana3_1134 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-4 Shewmr4_1133 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella sp MR-7 Shewmr7_1204 -241 4.9 AAACGAGATCTAAATCACATTT
Shewanella baltica OS155 Sbal_1222 -244 5 AAACGAGATCTAGATCACATTT
Shewanella denitrificans OS217 Sden_2745 -291 4.7 AAGCGTGATCAAAGTCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2911 -383 5.2 AATAGTGATCTGCATCACACTT
Shewanella amazonensis SB2B Sama_0900 -234 4.2 AGTCGTGAGTAAAATCACGTTT
Shewanella loihica PV-4 Shew_1074 -208 4.9 AAACGTGATCTAGATCAACTTT
Shewanella pealeana ATCC 700345 Spea_1061 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_1109 -255 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella piezotolerans WP3 swp_3756 -366 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1170 -236 4.9 AGTCGTGATCTAAATCACGTTT
Shewanella woodyi ATCC 51908 Swoo_1265 -234 4.9 AGTCGTGATCTTGATCACGTTT
Position: -240
Score: 4.1
Sequence: ACTCGTGATCAAGCTCACGGTT
Position: -99
Score: 4.1
Sequence: AATTTGGATGTGGGGCACATTT
Locus tag: Sama_0915
Sama_0915 -240 4.1 ACTCGTGATCAAGCTCACGGTT
-99 4.1 AATTTGGATGTGGGGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1 SO3542 -95 4.2 AATTTGGATGCAGAACACATTT
Shewanella putrefaciens CN-32 Sputcn32_1051 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp W3-18-1 Sputw3181_3114 -234 4 TCATGTGATCAAGCCTACATTT
-95 4.1 AATTTGGATGTAGGGCACATTT
Shewanella sp ANA-3 Shewana3_3145 -95 4 AATTTGGATGCAGGGCACATTT
Shewanella sp MR-4 Shewmr4_2965 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella sp MR-7 Shewmr7_3047 -95 4.3 AATTTGGATGTAGAACACATTT
Shewanella baltica OS155 Sbal_1046 -235 4.4 TCATGTGATCAAGCTCGCGTTT
-96 4.1 AATTTGGATGTAGGGCACATTT
Shewanella denitrificans OS217 Sden_2731 -233 5 CTTAGTGATCCAGTTCACATTA
-94 3.7 AAGTTAGATCGGGGACACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2898 -233 4.5 ACAAGTGATATCCATCACACTT
-95 3.8 AAATTAGATAAAGGCCACATTA
Shewanella amazonensis SB2B Sama_0915 -240 4.1 ACTCGTGATCAAGCTCACGGTT
-99 4.1 AATTTGGATGTGGGGCACATTT
Shewanella loihica PV-4 Shew_1091 -238 4.6 CCATGTGATACAGATCACAGTT
-97 4 AAATAAGATATTGAACACATTT
Shewanella pealeana ATCC 700345 Spea_1076 -235 3.9 CTGAGCGATATAGATCACAGTT
Shewanella halifaxensis HAW-EB4 Shal_1124 -56 4.3 TATAGTGAGTTATATAAAATTT
Shewanella piezotolerans WP3 swp_3738 -237 4.5 CTGAGTGATACAGATCACACAT
-96 3.8 AAATAAGATACAGGACACATTT
Shewanella sediminis HAW-EB3 Ssed_1186 -238 4.4 CCATGTGACGCAGATCACAGTT
-97 4.2 AAATAAGATGTAGAACACATTT
Shewanella woodyi ATCC 51908 Swoo_1282 -238 4.4 TCGCGTGATCACGATCACACTT
-97 3.8 AAACAAGATATAGAACACATTT
Position: -138
Score: 3.9
Sequence: TATTGTTACTGGCAGCAAACAA
Locus tag: Sama_0928
Sama_0928 -138 3.9 TATTGTTACTGGCAGCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilV
Ortholog function: type IV fimbrial biogenesis protein PilV
Shewanella oneidensis MR-1 SO3528 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32 Sputcn32_1063 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1 Sputw3181_3102 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3 Shewana3_3132 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4 Shewmr4_2953 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7 Shewmr7_3035 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155 Sbal_1058 -49 4.6 TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B Sama_0928 -138 3.9 TATTGTTACTGGCAGCAAACAA
Position: -135
Score: 3.9
Sequence: ATTTGTGATCCGCGTCGAAACG
Locus tag: Sama_0974
Sama_0974 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1 SO1218 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella putrefaciens CN-32 Sputcn32_2821 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp W3-18-1 Sputw3181_1190 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella sp ANA-3 Shewana3_1042 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-4 Shewmr4_1038 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella sp MR-7 Shewmr7_1103 -135 3.9 AAGTGTGACCTAAATCTAGTTG
Shewanella baltica OS155 Sbal_3226 -136 3.7 AAGTGTGACCTAAATCTATTTG
Shewanella amazonensis SB2B Sama_0974 -135 3.9 ATTTGTGATCCGCGTCGAAACG
Shewanella loihica PV-4 Shew_2814 -133 4 AAGTGTGATCTAAATCTATTTG
Shewanella pealeana ATCC 700345 Spea_3047 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella halifaxensis HAW-EB4 Shal_3135 -138 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella piezotolerans WP3 swp_1230 -139 4.8 AAGTGTGATCTAAATCTAATTA
Shewanella sediminis HAW-EB3 Ssed_3377 -134 4 AAGTGTGATCTAAATCTATTTG
Shewanella woodyi ATCC 51908 Swoo_3548 -157 4.2 AAGTGTGATCTAAATCTAGTTG
Position: -108
Score: 3.8
Sequence: TCATGTGAGCCAGGTTAAAAAA
Locus tag: Sama_0996
Sama_0996 -108 3.8 TCATGTGAGCCAGGTTAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1247
Ortholog function: hypothetical protein
Shewanella sp MR-4 Shewmr4_1059 -273 4.3 CAATGTGAGCTAGTTAACATCA
Shewanella sp MR-7 Shewmr7_1131 -273 4.3 CAATGTGAGCTAGTTAACATCA
Shewanella baltica OS155 Sbal_3204 -159 3.8 AATAGTGATCTTTCTCAGCATC
Shewanella amazonensis SB2B Sama_0996 -108 3.8 TCATGTGAGCCAGGTTAAAAAA
Shewanella pealeana ATCC 700345 Spea_3022 -187 4.1 TTTAGTGATGTTTTTTAGATTA
Shewanella woodyi ATCC 51908 Swoo_3518 -312 4.8 TTTTGTGAATTGTATCACTTAT
Position: -82
Score: 4.1
Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3553
Ortholog function: putative sulfate permease
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3553 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1042 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3123 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3154 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2974 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3056 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1037 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella frigidimarina NCIMB 400 Sfri_3674 -116 4.5 TAATGTGATGATAATTATATTA
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1067 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1334 -233 4.1 GTAAGTGCTACGCATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Shewanella woodyi ATCC 51908 Swoo_3320 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -192
Score: 4.2
Sequence: ATGTGTGAGCTTTGGCAAATTT
Locus tag: Sama_1068
Sama_1068 -192 4.2 ATGTGTGAGCTTTGGCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3551
Ortholog function: RNA polymerase sigma-70 factor, ECF subfamily
Shewanella oneidensis MR-1 SO3551 -152 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_1044 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp W3-18-1 Sputw3181_3121 -143 4 CTGTGTGATCATGATTGCAAAT
Shewanella sp ANA-3 Shewana3_3152 -165 4.1 TTGTGTGATCATAGTTGCAAAA
Shewanella sp MR-4 Shewmr4_2972 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella sp MR-7 Shewmr7_3054 -165 4.4 TTGTGTGATCATAGTTACAAAA
Shewanella baltica OS155 Sbal_1039 -126 3.8 CAGTGTGATCTTGTCAGCAAAA
Shewanella amazonensis SB2B Sama_1068 -192 4.2 ATGTGTGAGCTTTGGCAAATTT
Shewanella amazonensis SB2B Sama_1068 -192 4.2 ATGTGTGAGCTTTGGCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_1246 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1335 -273 4.4 AAATGTGATGCGTAGCACTTAC
Position: -126
Score: 4.5
Sequence: TTCCTTGATCCAGATCACACAT
Locus tag: Sama_1125
Sama_1125 -126 4.5 TTCCTTGATCCAGATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1613
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO1613 -75 4 TTCCTTGATTTAGCTCACACTC
Shewanella putrefaciens CN-32 Sputcn32_1334 -142 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp W3-18-1 Sputw3181_2769 -142 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp ANA-3 Shewana3_2830 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp MR-4 Shewmr4_2656 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella sp MR-7 Shewmr7_2723 -136 4.1 TTCCTTGATTTAGATCACACTC
Shewanella baltica OS155 Sbal_1436 -138 4.1 TTCCTTGACTTAGCTCACACTT
Shewanella amazonensis SB2B Sama_1125 -126 4.5 TTCCTTGATCCAGATCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2994 -181 4.6 TTCCTTGATCTAGATCACACTA
Shewanella piezotolerans WP3 swp_3538 -271 4.4 TTCCTTGATCGAGATCACACAA
Position: -7
Score: 3.4
Sequence: AAACGAGATGATGAAAACACTA
Locus tag: Sama_1207
Sama_1207 -7 3.4 AAACGAGATGATGAAAACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrA
Ortholog function: periplasmic decaheme cytochrome c, MtrA
Shewanella oneidensis MR-1 SO1777 -248 3.7 TGTTGTTTTTTTGCTCTCAATT
-190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_1477 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1 Sputw3181_2624 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3 Shewana3_2677 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4 Shewmr4_2511 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7 Shewmr7_2579 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155 Sbal_1588 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_2638 -164 3.8 TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B Sama_1207 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4 Shew_2526 -179 3.6 TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2785 -264 4 TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3 Ssed_1524 -191 4 TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_3126 -288 3.7 ATGAGTTACAACTTTCACACAT
Position: -230
Score: 3.9
Sequence: TTTTTTGATCTGAAACAGCTTT
Position: -178
Score: 3.6
Sequence: TAGCCGGATCCAGTTCACACAT
Locus tag: Sama_1208
Sama_1208 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -248 3.7 TGTTGTTTTTTTGCTCTCAATT
-190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_1478 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp W3-18-1 Sputw3181_2623 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp ANA-3 Shewana3_2676 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-4 Shewmr4_2510 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella sp MR-7 Shewmr7_2578 -189 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella baltica OS155 Sbal_1589 -190 3.5 TAGAAAGATCCAAGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_2637 -164 3.8 TAGGCTGATCATCATCACACAA
Shewanella amazonensis SB2B Sama_1208 -230 3.9 TTTTTTGATCTGAAACAGCTTT
-178 3.6 TAGCCGGATCCAGTTCACACAT
Shewanella loihica PV-4 Shew_2525 -179 3.6 TAGAAAGATCTCGGTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_2784 -264 4 TTTTATTACATTTATCACGTAT
Shewanella sediminis HAW-EB3 Ssed_1525 -191 4 TAGGCTGATCTAGGTCACACAT
Shewanella woodyi ATCC 51908 Swoo_3125 -288 3.7 ATGAGTTACAACTTTCACACAT
Position: -189
Score: 3.9
Sequence: CGGCGTGACACTCATCACACTT
Locus tag: Sama_1213
Sama_1213 -189 3.9 CGGCGTGACACTCATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -339 3.8 TTATGTGACAAAAATCTCTATG
Shewanella sp ANA-3 Shewana3_2672 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4 Shewmr4_2506 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7 Shewmr7_2574 -295 4.4 TTATGTGACAAAAATCTCAATG
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella baltica OS155 Sbal_1593 -304 3.8 TTATGTGACAAAAATACCAATG
-181 4.8 AAACGTGATCAACATCACGCTT
Shewanella amazonensis SB2B Sama_1213 -189 3.9 CGGCGTGACACTCATCACACTT
Shewanella loihica PV-4 Shew_2519 -260 4.5 TTATGTGACAGATATCTCAATC
-170 5.3 CAACGTGATCTAGATCACATAT
Shewanella pealeana ATCC 700345 Spea_2692 -286 4.1 TTATGTGACAAAACTCTCAACT
-197 5.4 AAGTGTGATACGCATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2778 -305 4.5 TTATGTGATAAATATCTCAACT
-184 4.6 AAACTTGACACAGATCACACTT
Shewanella piezotolerans WP3 swp_3272 -308 4.2 TTATGTGACAAATCTCTCAACT
-185 4.6 CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3 Ssed_1530 -291 4 TTATGTGACAAAAGTCTCAACT
-174 4.8 TAGCGTGACCAAGATCACACTT
Position: -228
Score: 3.8
Sequence: AAGTGTGATGAGTGTCACGCCG
Locus tag: Sama_1214
Sama_1214 -228 3.8 AAGTGTGATGAGTGTCACGCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -153 4 CATAGAGATTTTTGTCACATAA
Shewanella putrefaciens CN-32 Sputcn32_1480 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp W3-18-1 Sputw3181_2621 -155 4.6 CATTGGGATTTTTATCACATAA
Shewanella sp ANA-3 Shewana3_2671 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-4 Shewmr4_2505 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella sp MR-7 Shewmr7_2573 -276 5 AAGTGTGATCTTGTTCTCACTT
-153 4.4 CATTGAGATTTTTGTCACATAA
Shewanella baltica OS155 Sbal_1594 -276 5 AAGCGTGATGTTGATCACGTTT
Shewanella denitrificans OS217 Sden_2415 -148 3.9 ATCTGCGGTATTTATCACATAA
Shewanella amazonensis SB2B Sama_1214 -228 3.8 AAGTGTGATGAGTGTCACGCCG
Shewanella loihica PV-4 Shew_2518 -245 5.2 ATATGTGATCTAGATCACGTTG
-155 4.2 GATTGAGATATCTGTCACATAA
Shewanella pealeana ATCC 700345 Spea_2691 -247 5.5 TTATGTGATGCGTATCACACTT
-158 4.2 AGTTGAGAGTTTTGTCACATAA
Shewanella halifaxensis HAW-EB4 Shal_2777 -279 4.7 AAGTGTGATCTGTGTCAAGTTT
-158 4.7 AGTTGAGATATTTATCACATAA
Shewanella piezotolerans WP3 swp_3271 -280 4.6 AAGCGTGATCTACGTCACACTG
-157 4.2 AGTTGAGAGATTTGTCACATAA
Shewanella sediminis HAW-EB3 Ssed_1531 -275 4.9 AAGTGTGATCTTGGTCACGCTA
-158 4.3 AGTTGAGACTTTTGTCACATAA
Shewanella woodyi ATCC 51908 Swoo_3123 -272 4.7 AATCGTGACTTATATCACTTAA
-157 4.2 AGTTGGGACTTTTGTCACATAA
Position: -140
Score: 4.5
Sequence: TGTTGTGATTTTTAACACGTTT
Locus tag: Sama_1251
Sama_1251 -140 4.5 TGTTGTGATTTTTAACACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1821
Ortholog function: outer membrane porin, putative
Shewanella putrefaciens CN-32 Sputcn32_1515 -140 4.4 TTTTGTGATGTTAATCTACATA
Shewanella sp W3-18-1 Sputw3181_2585 -140 4.4 TTTTGTGATGTTAATCTACATA
Shewanella sp ANA-3 Shewana3_2628 -140 4.4 TTTTGTGATGTTTCTCTACATA
Shewanella sp MR-4 Shewmr4_2468 -140 4.4 TTTTGTGATGTTTCTCTACATA
Shewanella sp MR-7 Shewmr7_2536 -140 4.4 TTTTGTGATGTTTCTCTACATA
Shewanella baltica OS155 Sbal_1631 -143 4.5 TTTTGTGATGTTAATCGACATA
Shewanella frigidimarina NCIMB 400 Sfri_3603 -307 4.4 AGTCGCGATCTACATCAAATAA
-140 4.2 TTATATGAGATATATCGCCTTT
Shewanella amazonensis SB2B Sama_1251 -168 3.9 TTATCTGATAGAGATTTCAATT
-140 4.5 TGTTGTGATTTTTAACACGTTT
Position: -85
Score: 4
Sequence: AATTGTGAAGCCAGTCACGGTG
Locus tag: Sama_1287
Sama_1287 -85 4 AATTGTGAAGCCAGTCACGGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2806
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2806 -95 4.3 TCTTGTGAATTGAGTCACATAG
Shewanella putrefaciens CN-32 Sputcn32_1554 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp W3-18-1 Sputw3181_2545 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp ANA-3 Shewana3_2588 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-4 Shewmr4_2426 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella sp MR-7 Shewmr7_2496 -95 4 TCTTGTGAATTGAGTCACAGAG
Shewanella baltica OS155 Sbal_1679 -94 4.2 ATCTGTGAATTAAGTCACACAG
Shewanella denitrificans OS217 Sden_1453 -35 3.9 ATATTTTATGCCGTTCACTCAT
Shewanella amazonensis SB2B Sama_1287 -85 4 AATTGTGAAGCCAGTCACGGTG
Shewanella pealeana ATCC 700345 Spea_1483 -84 4.4 AATTGTGAATAACGTCACACAG
Shewanella halifaxensis HAW-EB4 Shal_1567 -84 4.7 AATTGTGAACAACATCACACAG
Shewanella piezotolerans WP3 swp_1689 27 4.3 AACTGTGAAAGGTATCACACAC
Shewanella sediminis HAW-EB3 Ssed_2877 -82 4.5 TAATGTGAATGGCGTCACACAG
Shewanella woodyi ATCC 51908 Swoo_1771 -81 4.6 TATTGTGAAAGTCATCACACAG
Position: -51
Score: 4.3
Sequence: TTTTGTGAGCTGCATCACGGCA
Locus tag: Sama_1307
Sama_1307 -51 4.3 TTTTGTGAGCTGCATCACGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2010
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO2010 -70 4.7 TTTTGTGATCTTCGTCACTGTA
Shewanella putrefaciens CN-32 Sputcn32_2305 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp W3-18-1 Sputw3181_1703 -65 5.1 TTTTGTGATCTCCATCACCGTT
Shewanella sp MR-4 Shewmr4_2257 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella sp MR-7 Shewmr7_2329 -65 4.9 TTTTGTGATCTTAATCACTGTA
Shewanella baltica OS155 Sbal_2577 -65 5 TTTTGTGATCTAAATCACTGTA
Shewanella denitrificans OS217 Sden_2384 -81 4.8 AAATGTGATCCAGCTCAGCTTT
Shewanella frigidimarina NCIMB 400 Sfri_2410 -116 4.8 TTTTGTGATCGACTTCACGTCT
Shewanella amazonensis SB2B Sama_1307 -51 4.3 TTTTGTGAGCTGCATCACGGCA
Shewanella loihica PV-4 Shew_2238 -48 4.1 AAAATTGATCTAGATCAATAAA
Shewanella pealeana ATCC 700345 Spea_1505 -51 4.1 AAAATTGATCTAGATCAATAAA
Shewanella halifaxensis HAW-EB4 Shal_1587 -80 4 TAGTGTGATTGATATCTATAAT
Shewanella piezotolerans WP3 swp_1711 -21 4.1 AAAATTGATCTAGATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_2855 -49 4.1 AAAATTGATCTAGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_1790 -48 4.1 TAAATTGATCTAGATCAATAAA
Position: -56
Score: 4
Sequence: AATTGTTACGGACGTAACAGAA
Locus tag: Sama_1371
Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -161 4.4 TAGCGTGATTTGGATCTCAATG
-110 4.4 AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_1392 -211 4.2 ATAAATGCTGCGTATCACATAA
-158 4 TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1 Sputw3181_2709 -211 4.2 ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3 Shewana3_2775 -107 3.8 AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155 Sbal_1490 -158 4 TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217 Sden_2589 -157 4.2 TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400 Sfri_1334 -232 3.9 TCGCTTGATCAACCTCACAAAA
-170 3.9 TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345 Spea_2787 -159 4.4 TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4 Shal_2887 -161 5.1 AAATGTGATCTTCATCGCCTTT
-111 4.8 ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3 swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3 Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908 Swoo_3207 -211 4.3 AATTATGACGTCGCTCACTAAA
-158 4.5 AAGTGTGAGTTCGATCAAGTAT
-108 3.9 TTTATTGATTTGGATCAATAAA
Position: -67
Score: 4.1
Sequence: AACCGCGACCGCCATCACATTT
Locus tag: Sama_1375
Sama_1375 -67 4.1 AACCGCGACCGCCATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atoB
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella amazonensis SB2B Sama_1375 -67 4.1 AACCGCGACCGCCATCACATTT
Shewanella loihica PV-4 Shew_1667 -75 4.2 TTATTTGAACATGATCACGCTT
Shewanella pealeana ATCC 700345 Spea_2783 -138 4.5 AATATTGAGCAAGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_2878 -138 4.2 AATGTTGAGCAAGATCACACTT
Shewanella piezotolerans WP3 swp_3387 -175 4.4 AATGTTGAGCGAGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1473 -92 4.3 TTAATTGAGCAAGATCACACTT
Position: -80
Score: 3.7
Sequence: TTTTGTGACGACTGTCGCCGTG
Locus tag: Sama_1423
Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -278
Score: 3.9
Sequence: CTATGTTAGCTGTGTCGCAAAT
Locus tag: Sama_1499
Sama_1499 -278 3.9 CTATGTTAGCTGTGTCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_1673
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_2377 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella sp W3-18-1 Sputw3181_1632 -298 3.8 AGTTGTTAAGTGCCTCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_2472 -298 4.1 ACTTGTTATCCAGCTCTCACTT
Shewanella amazonensis SB2B Sama_1499 -278 3.9 CTATGTTAGCTGTGTCGCAAAT
Shewanella loihica PV-4 Shew_2389 -301 4 AGATGTTAACTAGCTCCCAAAT
Shewanella pealeana ATCC 700345 Spea_1673 -311 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella halifaxensis HAW-EB4 Shal_2591 -312 4.2 AGTTGTTAACTGGATCTCAAAT
Shewanella piezotolerans WP3 swp_1953 -311 4 AGTTGTTAAGTCGCTCTCAATT
Shewanella sediminis HAW-EB3 Ssed_1709 -311 3.9 AGTTGTTAAGTGGCTCCCAATT
Shewanella woodyi ATCC 51908 Swoo_2882 -310 4.2 AGTTGTTAACTGGATCTCAAAT
Position: -78
Score: 4.5
Sequence: AATTGATACCCAGATCACATAT
Locus tag: Sama_1569
Sama_1569 -78 4.5 AATTGATACCCAGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgA
Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shewanella oneidensis MR-1 SO1963 -92 3.8 AATTGATAAGAAGATCACAGTA
Shewanella putrefaciens CN-32 Sputcn32_1671 -66 4.1 AATTGATAACAAGATCACATAA
Shewanella sp W3-18-1 Sputw3181_2354 -66 4.1 AATTGATAACAAGATCACATAA
Shewanella sp ANA-3 Shewana3_2481 -144 3.9 TTTTTAGATTGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella sp MR-4 Shewmr4_2291 -144 3.9 TTTTTAGATTGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella sp MR-7 Shewmr7_2363 -144 3.9 TTTTTAGATAGAGATAACAGAT
-88 3.9 AATTGATAAGAAGATCACACTA
Shewanella baltica OS155 Sbal_2615 -144 3.5 TTTTTAGATTGAGATAACGGAT
-88 4 AATTGATAACAAGATCACACTA
Shewanella denitrificans OS217 Sden_2162 -122 3.6 AATTGATAGCTAGATCACAACG
Shewanella frigidimarina NCIMB 400 Sfri_2326 -126 3.5 TTTGTTGATCTTTACCACTAAA
-106 5 AATTGTAAGTTAGATCACATAT
Shewanella amazonensis SB2B Sama_1569 -78 4.5 AATTGATACCCAGATCACATAT
Shewanella loihica PV-4 Shew_2154 -61 5.1 AATTGTTACTTAGATCACATAA
Shewanella pealeana ATCC 700345 Spea_1874 -63 4 AAATTGAACCTAGATCACATTA
Shewanella halifaxensis HAW-EB4 Shal_2409 -63 3.9 AAATTAAAGCTAGATCACATTA
Shewanella piezotolerans WP3 swp_2870 -84 3.5 TTTTTTGCTGTTGTTAGCAACT
-61 4.1 AATTGATAACAAGATCACATTA
Position: -135
Score: 4.7
Sequence: ATATGTGATCTGGGTATCAATT
Locus tag: Sama_1570
Sama_1570 -135 4.7 ATATGTGATCTGGGTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgR
Ortholog function: Tyrosine degradation transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1965 -148 4.4 TACTGTGATCTTCTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_1672 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp W3-18-1 Sputw3181_2353 -148 4.8 TTATGTGATCTTGTTATCAATT
Shewanella sp ANA-3 Shewana3_2480 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-4 Shewmr4_2290 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCAATCTAAAAA
Shewanella sp MR-7 Shewmr7_2362 -148 4.6 TAGTGTGATCTTCTTATCAATT
-92 3.9 ATCTGTTATCTCTATCTAAAAA
Shewanella baltica OS155 Sbal_2614 -148 4.7 TAGTGTGATCTTGTTATCAATT
Shewanella denitrificans OS217 Sden_2161 -146 4.3 CGTTGTGATCTAGCTATCAATT
Shewanella frigidimarina NCIMB 400 Sfri_2325 -135 5.1 ATATGTGATCTAACTTACAATT
Shewanella amazonensis SB2B Sama_1570 -135 4.7 ATATGTGATCTGGGTATCAATT
Shewanella loihica PV-4 Shew_2153 -115 5.1 TTATGTGATCTAAGTAACAATT
Shewanella pealeana ATCC 700345 Spea_1875 -114 4.3 TAATGTGATCTAGGTTCAATTT
Shewanella halifaxensis HAW-EB4 Shal_2408 -114 4.5 TAATGTGATCTAGCTTTAATTT
Shewanella piezotolerans WP3 swp_2869 -115 4.9 TAATGTGATCTTGTTATCAATT
Shewanella sediminis HAW-EB3 Ssed_2686 -116 4.5 ATTTGTGACATACCTATCAATT
Shewanella woodyi ATCC 51908 Swoo_1933 -116 4.5 ATGTGTGATCTAAGTATCAATT
Position: -2
Score: 3.9
Sequence: TTATGTTATTAATGCCACATAC
Locus tag: Sama_1594
Sama_1594 -2 3.9 TTATGTTATTAATGCCACATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycbW
Ortholog function: probable membrane protein YcbW
Shewanella oneidensis MR-1 SO2591 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 3.7 TTATGTTATTATTGCCGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_2193 -63 3.8 TATTTTGATATTGAATAAAATA
-34 4 TTATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp W3-18-1 Sputw3181_1816 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 3.8 TTATGTTATTAATGCCGCAAAA
Shewanella sp ANA-3 Shewana3_1787 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-4 Shewmr4_1682 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.8 TGATGTGCCAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella sp MR-7 Shewmr7_1757 -63 3.8 TATTTTGATATTGAATAAAATA
-34 3.7 TGATGTGCGAGTGTTCAAATAG
-2 4 TTATGTTATTATTGCCACAAAA
Shewanella baltica OS155 Sbal_2438 -2 4.2 TTATGTTATTAATGCCACAAAA
Shewanella denitrificans OS217 Sden_1731 -139 4.2 ATTTATGAGTGCGATCAAAATT
Shewanella amazonensis SB2B Sama_1594 -2 3.9 TTATGTTATTAATGCCACATAC
Shewanella loihica PV-4 Shew_1811 -94 4.6 TGTTGTAATCTATATCATATTT
Shewanella pealeana ATCC 700345 Spea_1944 -62 4.1 TATTTTGATATTGATGAAATTA
Shewanella halifaxensis HAW-EB4 Shal_2355 -62 4.1 TATTTTGATATTGATGAAATAA
Shewanella piezotolerans WP3 swp_2809 -239 3.8 TTTAATAATATAGATCATAAAA
-143 4.1 TATTTTGATATTGATGAAATTA
-2 4 ATATGGAATTTCTATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_2474 -94 4.6 TATTGTTATTCAACTCATATTT
Shewanella woodyi ATCC 51908 Swoo_2142 -52 4 TACTTTGATATTGAACAAAATA
Position: -233
Score: 3.9
Sequence: AAATGTGAACAAGATCACAGGC
Locus tag: Sama_1614
Sama_1614 -233 3.9 AAATGTGAACAAGATCACAGGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rplY
Ortholog function: LSU ribosomal protein L25p
Shewanella oneidensis MR-1 SO2112 -95 4.4 AAGTGTGATCAAGATCACGTGT
Shewanella putrefaciens CN-32 Sputcn32_1895 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp W3-18-1 Sputw3181_2113 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp ANA-3 Shewana3_1892 -234 3.8 TTTTTTGATTCAGATCAAAGCC
Shewanella sp MR-4 Shewmr4_1834 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella sp MR-7 Shewmr7_2143 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella baltica OS155 Sbal_1901 -247 4 CAGTGTGATCTAGATCGCGTGT
Shewanella amazonensis SB2B Sama_1614 -233 3.9 AAATGTGAACAAGATCACAGGC
Position: -300
Score: 3.6
Sequence: TATTGTGTTTTCATTAGCTTAA
Position: -172
Score: 3.4
Sequence: AAGCATGACACACCTCATGTTA
Locus tag: Sama_1679
Sama_1679 -300 3.6 TATTGTGTTTTCATTAGCTTAA
-172 3.4 AAGCATGACACACCTCATGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewanella oneidensis MR-1 SO2099 -105 4 ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_2088 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1 Sputw3181_1924 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3 Shewana3_1880 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4 Shewmr4_1822 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7 Shewmr7_2155 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155 Sbal_1889 -229 3.9 TTAAGTGACCGATTTCATCCAA
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2103 -174 3.8 TTTTGTTAACTTGATCAACATC
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B Sama_1679 -172 3.4 AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4 Shew_1765 -164 3.8 AAACTTGATCCAGCTCATAGCT
-103 3.7 AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345 Spea_2033 -211 4.6 TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_2261 -212 5 TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_1908 -162 4 AAAGATGATCTAGTTCATATTG
Position: -144
Score: 4.2
Sequence: ACTTGTGATGTAGCCCAAAGAT
Locus tag: Sama_1688
Sama_1688 -144 4.2 ACTTGTGATGTAGCCCAAAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fumB
Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewanella oneidensis MR-1 SO2222 -105 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella putrefaciens CN-32 Sputcn32_1807 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp W3-18-1 Sputw3181_2218 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp ANA-3 Shewana3_2302 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-4 Shewmr4_2124 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella sp MR-7 Shewmr7_2200 -104 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella baltica OS155 Sbal_1918 -103 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella denitrificans OS217 Sden_1912 -131 3.9 AAATGTGATGTAGCCCCAAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2156 -122 4.6 AAATGTGATGTAGCCCAAAAAG
Shewanella amazonensis SB2B Sama_1688 -144 4.2 ACTTGTGATGTAGCCCAAAGAT
Shewanella loihica PV-4 Shew_1904 -111 3.9 AAATGTGATGTTCCCCTAAAAG
-73 4.8 TATTGTGAACGGATTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_2038 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella halifaxensis HAW-EB4 Shal_2256 -162 4.3 AAATGTGATGTTTAACTCAAAC
Shewanella piezotolerans WP3 swp_2633 -162 4.4 AAATGTGATGTTTAACTCAAAG
Shewanella sediminis HAW-EB3 Ssed_2358 -194 3.8 AAATGTGATATTCCCCTAAAAG
Position: -180
Score: 4.3
Sequence: TTTTTTGACACAGCTCAAGTAT
Locus tag: Sama_1791
Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -96
Score: 4.3
Sequence: AACTGTGAGTTGCTTCAGATTT
Locus tag: Sama_1837
Sama_1837 -96 4.3 AACTGTGAGTTGCTTCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32 Sputcn32_2101 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1 Sputw3181_1911 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3 Shewana3_2232 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.4 CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4 Shewmr4_2107 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7 Shewmr7_1867 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155 Sbal_2269 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155 Sbal_4555 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400 Sfri_2179 -101 4.6 AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400 Sfri_2098 -213 3.8 AAACGTTAAATCCATTACATTA
-41 3.7 TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B Sama_1837 -96 4.3 AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4 Shal_1924 -95 4 TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3 Ssed_2709 -312 3.8 TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2563 -243 3.8 TTTTATGACTCTATTAATATAA
Position: -301
Score: 5.2
Sequence: AAGTGTGATGCACGTCACAAAA
Locus tag: Sama_1838
Sama_1838 -301 5.2 AAGTGTGATGCACGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2427
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO2427 -319 5.1 AAGTGTGATTAAAATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_1940 -318 5.7 TAGTGTGATCTACATCACATAA
-274 4 AAATGTTATTTTATTAACAGAG
Shewanella sp W3-18-1 Sputw3181_2068 -318 4.6 GCGTGTGATCTATATCACATAA
Shewanella sp ANA-3 Shewana3_1958 -320 5.2 AAGTGTGACACACATCACATAT
-276 4.4 AAATGTTATTTTCTTAACAGTT
Shewanella sp MR-4 Shewmr4_1903 -319 5.6 AAATGTGATGTGCGTCACATTT
-275 3.9 AAATGTTATTTTATTAACAGCT
Shewanella sp MR-7 Shewmr7_2075 -319 5.2 AAGTGTGACGTGTGTCACATTT
-275 4.3 AAATGTTATTTTATTAACAGTA
Shewanella baltica OS155 Sbal_2044 -317 5.1 AAGCGTGATCTGTGTCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -149 5 AAATGTGATGTTGTTCACATGT
-4 4.1 ATTCATGAGTTCAGTCACATTA
Shewanella amazonensis SB2B Sama_1838 -324 3.8 TTAATCGATATGGGTCACAGAA
-301 5.2 AAGTGTGATGCACGTCACAAAA
Shewanella loihica PV-4 Shew_2074 -308 5.1 TTTTGTGATAATGGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1923 -306 5.5 AATTGTGATGCGCGTCACAATT
-199 4.1 ACTTGTGCTGTTTGTCACAATG
Shewanella piezotolerans WP3 swp_2362 -310 4.7 AAGCGTGACCTGTGTCACACTT
Shewanella sediminis HAW-EB3 Ssed_2036 -316 4.6 TTTCGTGACGCGCGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_2565 -321 4.9 TTCTGTGACCTGTGTCACAAAA
Position: -195
Score: 3.9
Sequence: ATAAGCGATCCTGATCACAAGT
Locus tag: Sama_1869
Sama_1869 -195 3.9 ATAAGCGATCCTGATCACAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2535
Ortholog function: Predicted glutamine amidotransferase
Shewanella oneidensis MR-1 SO2535 -194 4.4 TTTGTTGATTGCGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_1792 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp W3-18-1 Sputw3181_2233 -193 4.7 TTTATTGATGGCGATCACAATT
Shewanella sp ANA-3 Shewana3_2322 -133 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-4 Shewmr4_2145 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella sp MR-7 Shewmr7_2222 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella baltica OS155 Sbal_2305 -193 4.4 TTTGTTGATTGCGATCACAATT
Shewanella denitrificans OS217 Sden_1765 -204 3.7 TATGATGATCCTATTCACAAGT
Shewanella frigidimarina NCIMB 400 Sfri_1870 -203 3.9 ATTATTGATCTCATTCACAAGA
Shewanella amazonensis SB2B Sama_1869 -195 3.9 ATAAGCGATCCTGATCACAAGT
Shewanella loihica PV-4 Shew_2107 -191 4.6 TTATATGACCATAATCACAATT
Shewanella pealeana ATCC 700345 Spea_2392 -196 4.4 TTTTGAGTTCTATCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_1891 -199 4.2 TTTTGAGGTTTATCTCACAATT
Shewanella sediminis HAW-EB3 Ssed_2000 -191 4.5 TTTATTGATCATAATCACAATT
Shewanella woodyi ATCC 51908 Swoo_2603 -190 4.8 TATATTGATCGATATCACAATT
Position: -64
Score: 4.3
Sequence: ACTTGTGATCAGGATCGCTTAT
Locus tag: Sama_1870
Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -173
Score: 4.2
Sequence: ATCTGTGATGTGAATCATTCTT
Locus tag: Sama_1919
Sama_1919 -173 4.2 ATCTGTGATGTGAATCATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1 SO2880 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32 Sputcn32_1688 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1 Sputw3181_2337 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3 Shewana3_1640 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4 Shewmr4_1573 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7 Shewmr7_1648 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155 Sbal_1783 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217 Sden_1640 -137 4.5 TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -155 4.5 TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B Sama_1919 -173 4.2 ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4 Shew_1835 -164 4.2 AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345 Spea_1964 -154 3.6 ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4 Shal_2335 -154 3.9 AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3 swp_2753 -153 3.6 ACTTGTGAAGTGTATCATTGTT
Position: -91
Score: 4.2
Sequence: AAGAATGATTCACATCACAGAT
Locus tag: Sama_1920
Sama_1920 -91 4.2 AAGAATGATTCACATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodB
Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1)
Shewanella oneidensis MR-1 SO2881 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella putrefaciens CN-32 Sputcn32_1687 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp W3-18-1 Sputw3181_2338 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp ANA-3 Shewana3_1639 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp MR-4 Shewmr4_1572 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella sp MR-7 Shewmr7_1647 -91 4.3 AACAATGATTCACATCACAAAT
Shewanella baltica OS155 Sbal_1782 -90 4.3 AACAATGATTCACATCACAAAT
Shewanella denitrificans OS217 Sden_1639 -106 4.3 AACAATGATGCACATCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_1747 -102 4.2 AACAATGATTCACATCACAAAA
Shewanella amazonensis SB2B Sama_1920 -91 4.2 AAGAATGATTCACATCACAGAT
Shewanella loihica PV-4 Shew_1834 -89 3.8 AACAATGATTCACATCACAACT
Shewanella halifaxensis HAW-EB4 Shal_2336 -93 3.7 AACAATGATACACTTCACAACT
Position: -140
Score: 4.8
Sequence: TTATGTGATGATTGTCAAAAAT
Locus tag: Sama_1934
Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD1
Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewanella oneidensis MR-1 SO2581 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_1761 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp W3-18-1 Sputw3181_2264 -154 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp ANA-3 Shewana3_2386 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-4 Shewmr4_2177 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella sp MR-7 Shewmr7_2254 -155 5.1 TTATGTGATGATGATCAAAATT
Shewanella baltica OS155 Sbal_1864 -156 5.1 TTATGTGATGATGATCAAAATT
Shewanella denitrificans OS217 Sden_1625 -189 4.1 TTATGTGATTATGGGCCCAAAT
Shewanella frigidimarina NCIMB 400 Sfri_1733 -165 4.7 TTATGTGATTATGATCGAAAAT
Shewanella amazonensis SB2B Sama_1934 -140 4.8 TTATGTGATGATTGTCAAAAAT
Shewanella loihica PV-4 Shew_2188 -149 4.9 TTGTGTGATGATGTTCAAAATT
Shewanella pealeana ATCC 700345 Spea_2448 -156 5 TTATGTGATGATAATCAAAATT
Shewanella halifaxensis HAW-EB4 Shal_1832 -155 5 TTATGTGATGATAATCAAAATT
Shewanella piezotolerans WP3 swp_2289 -153 5 ATATGTGATGATAATCAAAATT
Shewanella sediminis HAW-EB3 Ssed_2523 -151 5 TTATGTGATGATGATCATAATT
Shewanella woodyi ATCC 51908 Swoo_2110 -153 5.1 TTATGTGATGATGTTCAAAATT
Position: -82
Score: 4
Sequence: AAATGGGATTAGACTCCCATTA
Locus tag: Sama_1974
Sama_1974 -82 4 AAATGGGATTAGACTCCCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase (EC 3.5.4.5)
Shewanella oneidensis MR-1 SO2791 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_1568 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp W3-18-1 Sputw3181_2531 -131 3.8 TATGGTGAAATCGGTCAAATAC
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella sp ANA-3 Shewana3_2573 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-4 Shewmr4_2411 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella sp MR-7 Shewmr7_2481 -82 4.1 AAACGCGAACTAACTCGCATTT
Shewanella baltica OS155 Sbal_1694 -157 3.8 ATTCGTGAATAGACTCACTCTA
-82 4.2 AAACGCGAGCTAACTCGCATTT
Shewanella frigidimarina NCIMB 400 Sfri_1637 -44 3.8 AAATTTTATTTTTATCCAATTT
Shewanella amazonensis SB2B Sama_1974 -82 4 AAATGGGATTAGACTCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_1783 -81 3.9 AACTGAGATCTTCATCTCATTC
Shewanella piezotolerans WP3 swp_3037 -82 4.1 AAGTGCGATCTCTGTCGCATTC
Shewanella sediminis HAW-EB3 Ssed_2618 -82 3.9 AAATGGGAGCTGGATCTCATCA
Shewanella woodyi ATCC 51908 Swoo_2048 -82 3.9 AAATGGGAGAAAGATCCCATTA
Position: -139
Score: 4
Sequence: ATTTGTGATCACTGTGGCAATT
Locus tag: Sama_2066
Sama_2066 -139 4 ATTTGTGATCACTGTGGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2637
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2066 -139 4 ATTTGTGATCACTGTGGCAATT
Shewanella loihica PV-4 Shew_1556 -132 4.2 AATTGTGATCGGCGTGGCAATT
Shewanella pealeana ATCC 700345 Spea_2542 -138 4.3 ATTTGTGATTTGTCTGGCAATT
Shewanella halifaxensis HAW-EB4 Shal_1712 -140 4.1 ATTTGTGAACTATCTGGCAATT
Shewanella piezotolerans WP3 swp_1858 -143 4.3 ATTTGTGATCCATGTGGCAATT
Shewanella sediminis HAW-EB3 Ssed_1878 -136 4.4 AATTGTGATCTGCGTGGCAATT
Shewanella woodyi ATCC 51908 Swoo_2709 -136 4.4 AATTGTGATCTGTGTGGCAATT
Position: -254
Score: 3.7
Sequence: ATTTGAGATTAGTTTAACTAAT
Position: -226
Score: 4.7
Sequence: TTGTGTGATCTTGCGCACGTTA
Locus tag: Sama_2091
Sama_2091 -254 3.7 ATTTGAGATTAGTTTAACTAAT
-226 4.7 TTGTGTGATCTTGCGCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO2753 -235 4.7 TTAAGTGATCTGCCTCACTTAA
Shewanella putrefaciens CN-32 Sputcn32_1602 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp W3-18-1 Sputw3181_2420 -234 4.8 TTAAGTGATCTAGCTCACTTAA
Shewanella sp ANA-3 Shewana3_2536 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-4 Shewmr4_2373 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella sp MR-7 Shewmr7_2445 -234 4.8 TTAAGTGATCTGGCTCACTTAA
Shewanella baltica OS155 Sbal_1741 -233 4.7 AAAGGTGATCTATATCACTTAA
Shewanella amazonensis SB2B Sama_2091 -226 4.7 TTGTGTGATCTTGCGCACGTTA
Shewanella loihica PV-4 Shew_1522 -276 3.5 ATTTGCGCTTGATTACGCAAAA
Shewanella pealeana ATCC 700345 Spea_2569 -251 3.9 TAGTGTGGGTTTAGTCACACTT
Shewanella halifaxensis HAW-EB4 Shal_1686 -266 3.6 TATTGCGGGGTTTGTCACGTTT
Shewanella piezotolerans WP3 swp_1825 -248 3.6 TTGTGAGTCCTTAATCACGTTT
Shewanella sediminis HAW-EB3 Ssed_1852 -257 3.8 AAGTGTGATCTTGGTCGGTAAA
Shewanella woodyi ATCC 51908 Swoo_2736 -259 3.7 TAGTGTGATCTAGGTTGGGTAA
Position: -115
Score: 4.3
Sequence: TTGTGTGATATTCCTCCAAATT
Locus tag: Sama_2094
Sama_2094 -115 4.3 TTGTGTGATATTCCTCCAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Swoo_2741
Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein
Shewanella putrefaciens CN-32 Sputcn32_1599 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp W3-18-1 Sputw3181_2423 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp ANA-3 Shewana3_2541 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-4 Shewmr4_2376 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella sp MR-7 Shewmr7_2448 -167 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella baltica OS155 Sbal_1738 -183 4.6 AAATGTGATATTGGTCTTAAAT
Shewanella denitrificans OS217 Sden_2091 -88 4.7 GATTGTGATCCCTCTCGCATAT
Shewanella amazonensis SB2B Sama_2094 -115 4.3 TTGTGTGATATTCCTCCAAATT
Shewanella loihica PV-4 Shew_1516 -105 4.1 AAAAGTGACAATGATCCCAAAT
Shewanella halifaxensis HAW-EB4 Shal_1683 -108 4.4 AAAAGTGATATTGATATCAAAT
Shewanella piezotolerans WP3 swp_1821 -108 4.7 AAAAGTGATATTGCTCTCAAAT
Shewanella sediminis HAW-EB3 Ssed_1848 -106 4.4 AAAGGTGATATTGATCCCAAAT
Position: -210
Score: 3.9
Sequence: AATTTGGAGGAATATCACACAA
Locus tag: Sama_2095
Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1 SO2757 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_1598 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1 Sputw3181_2424 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3 Shewana3_2542 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-4 Shewmr4_2377 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-7 Shewmr7_2449 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella baltica OS155 Sbal_1737 -227 4.2 ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217 Sden_2092 -208 4.3 ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400 Sfri_1454 -191 3.5 TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4 Shew_1515 -230 4 ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4 Shal_1682 -225 3.9 ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3 swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3 Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2742 -155 4 TTTAGTGCTGTTATTTACACTT
Position: -112
Score: 3.6
Sequence: AAGTTAGAATCGGGTCACACTT
Locus tag: Sama_2168
Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadI
Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO3089 -131 3.9 AAGTTAGAATCAGATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_2460 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp W3-18-1 Sputw3181_1548 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp ANA-3 Shewana3_1460 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-4 Shewmr4_1407 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sp MR-7 Shewmr7_1472 -135 3.9 AAGTTAGAATCAGATCACACTT
Shewanella baltica OS155 Sbal_2761 -136 3.9 AAGTTAGAATCAGATCACACTT
Shewanella denitrificans OS217 Sden_1529 -109 3.9 AAGTTAGAATCAGATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2677 -104 3.9 AAGTTAGAATCAGATCACACTT
Shewanella amazonensis SB2B Sama_2168 -112 3.6 AAGTTAGAATCGGGTCACACTT
Shewanella loihica PV-4 Shew_2426 -134 3.9 AAGTTAGAATCAGATCACACTT
Shewanella pealeana ATCC 700345 Spea_2599 -116 3.9 AAGTTAGAATCAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_2671 -119 3.9 AAGTTAGAATCAGATCACACTT
Shewanella piezotolerans WP3 swp_3140 -122 3.9 AAGTTAGAATCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_1628 -151 3.9 AAGTTAGAATCAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_3027 -138 4.1 AAGTTAGAATCAGATCACATTT
Position: -137
Score: 4.2
Sequence: AAGTGTGACCCGATTCTAACTT
Locus tag: Sama_2169
Sama_2169 -137 4.2 AAGTGTGACCCGATTCTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3090
Ortholog function: MoxR-like ATPase in aerotolerance operon
Shewanella oneidensis MR-1 SO3090 -165 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella putrefaciens CN-32 Sputcn32_2461 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp W3-18-1 Sputw3181_1547 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp ANA-3 Shewana3_1459 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-4 Shewmr4_1406 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sp MR-7 Shewmr7_1471 -160 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella baltica OS155 Sbal_2762 -148 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella denitrificans OS217 Sden_1528 -157 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella frigidimarina NCIMB 400 Sfri_2678 -167 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella amazonensis SB2B Sama_2169 -137 4.2 AAGTGTGACCCGATTCTAACTT
Shewanella loihica PV-4 Shew_2427 -296 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella pealeana ATCC 700345 Spea_2600 -306 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella halifaxensis HAW-EB4 Shal_2672 -319 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella piezotolerans WP3 swp_3141 -97 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella sediminis HAW-EB3 Ssed_1627 -316 4.6 AAGTGTGATCTGATTCTAACTT
Shewanella woodyi ATCC 51908 Swoo_3028 -306 4.8 AAATGTGATCTGATTCTAACTT
Position: -77
Score: 3.8
Sequence: AATTGGGATCCGACCCAAACTT
Locus tag: Sama_2177
Sama_2177 -77 3.8 AATTGGGATCCGACCCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewanella putrefaciens CN-32 Sputcn32_2469 -60 4.2 AGGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp W3-18-1 Sputw3181_1539 -60 4.4 ATGTTAGATTTTGATCACATTT
-30 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp ANA-3 Shewana3_1451 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-4 Shewmr4_1398 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella sp MR-7 Shewmr7_1463 -73 3.8 TAATGGGTTCTTGCTCAAACAT
Shewanella baltica OS155 Sbal_2770 -102 3.8 AGGTTAGATTTTAATCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_2686 -64 4.5 AAGTGTGAACTAGATCGAACTT
Shewanella amazonensis SB2B Sama_2177 -77 3.8 AATTGGGATCCGACCCAAACTT
Shewanella pealeana ATCC 700345 Spea_2608 -104 3.8 TGGTTAGATCTTCATCACATTC
Shewanella halifaxensis HAW-EB4 Shal_2680 -74 3.7 ATTTGAGCCTTGGCTCATAAAT
Shewanella piezotolerans WP3 swp_3151 -72 3.7 ATTATTGAGCTATAGCTCAAAT
-70 4.3 TATTGAGCTATAGCTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_1619 -72 3.9 TATTGAGCTTCCTATCAAACAT
Shewanella woodyi ATCC 51908 Swoo_3036 -86 4.4 GTATATGACCCAGTTCACATTT
Position: -151
Score: 4.4
Sequence: AATAGTGATTAAGCTCGCGTTT
Locus tag: Sama_2198
Sama_2198 -151 4.4 AATAGTGATTAAGCTCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3119
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3119 -166 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2489 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp W3-18-1 Sputw3181_1519 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp ANA-3 Shewana3_1429 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-4 Shewmr4_1376 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella sp MR-7 Shewmr7_1441 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella baltica OS155 Sbal_2792 -171 4.5 AATAGTGATAAAGATCGCGTTT
Shewanella amazonensis SB2B Sama_2198 -151 4.4 AATAGTGATTAAGCTCGCGTTT
Shewanella pealeana ATCC 700345 Spea_1466 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella halifaxensis HAW-EB4 Shal_1549 -148 4.1 GAAAGTGATTTATATCGCGTTT
Shewanella piezotolerans WP3 swp_1671 -220 3.8 GAAAGTGACTTAAATCGCGTTT
Shewanella sediminis HAW-EB3 Ssed_2897 -173 4.7 TAAAGTGATTTAGATCGCGTTT
Shewanella woodyi ATCC 51908 Swoo_1750 -148 4.4 TTAAGTGACTTAGATCGCGTTT
Position: -111
Score: 5
Sequence: AATTGTGATTTGAGTCACGCTA
Locus tag: Sama_2219
Sama_2219 -111 5 AATTGTGATTTGAGTCACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fahA
Ortholog function: Fumarylacetoacetate hydrolase family protein
Shewanella oneidensis MR-1 SO1670 -200 5.1 AAATGTGATTTTGTTCACGCTA
Shewanella putrefaciens CN-32 Sputcn32_1389 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp W3-18-1 Sputw3181_2712 -229 5 AAATGTGATTTGTGTCACGCTA
Shewanella sp ANA-3 Shewana3_2778 -197 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-4 Shewmr4_2604 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella sp MR-7 Shewmr7_2671 -196 5.1 AAATGTGATTTTGCTCACGCTA
Shewanella baltica OS155 Sbal_1487 -235 5 AAATGTGATTTTGGTCACGCTA
Shewanella denitrificans OS217 Sden_2592 -107 4.7 AAATGTGATTTTGCGCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_1331 -116 4.1 AAATGTGATTTGGTACTTACTA
Shewanella amazonensis SB2B Sama_2219 -111 5 AATTGTGATTTGAGTCACGCTA
Shewanella loihica PV-4 Shew_1438 -130 4.4 GAGTGTGATTTGTATCACGCTA
Shewanella pealeana ATCC 700345 Spea_1451 -158 5.3 AAGTGTGATTTCGTTCACACTA
Shewanella halifaxensis HAW-EB4 Shal_1534 -144 4.5 CAGTGTGATTTATCTCACGCTA
Shewanella piezotolerans WP3 swp_1653 -140 5 TAGTGTGATTTAGCTCACGCTA
Shewanella sediminis HAW-EB3 Ssed_2927 -116 4.1 GAGCGTGATTCATGTCACACTA
Shewanella woodyi ATCC 51908 Swoo_1718 -133 5 TATTGTGATTTGTGTCACGCTA
Position: -76
Score: 4.6
Sequence: AAACGTGAGGCAGTTAACAAAA
Locus tag: Sama_2222
Sama_2222 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO1666 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_1386 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_2715 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3 Shewana3_2781 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4 Shewmr4_2607 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7 Shewmr7_2674 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155 Sbal_1484 -75 4.7 AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217 Sden_2595 -61 4.1 AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -74 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B Sama_2222 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4 Shew_1435 -40 4.7 AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345 Spea_1448 -126 4.9 AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4 Shal_1531 -86 4.7 AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3 swp_1650 -76 5 AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_2930 -75 4.8 AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_1715 -74 4.7 AAGTGTGAAGTGGTTAACAAAA
Position: -304
Score: 4.5
Sequence: TTTTGTTAACTGCCTCACGTTT
Locus tag: Sama_2223
Sama_2223 -304 4.5 TTTTGTTAACTGCCTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galU
Ortholog function: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Shewanella amazonensis SB2B Sama_2223 -304 4.5 TTTTGTTAACTGCCTCACGTTT
Position: -183
Score: 4.7
Sequence: TTATGTGATTTATGTCTCGATT
Locus tag: Sama_2422
Sama_2422 -183 4.7 TTATGTGATTTATGTCTCGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1539
Ortholog function: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewanella putrefaciens CN-32 Sputcn32_1287 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp W3-18-1 Sputw3181_2819 -127 4.5 AATAGTGAGCGATATCACGATT
Shewanella sp ANA-3 Shewana3_2889 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-4 Shewmr4_2719 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella sp MR-7 Shewmr7_2790 -127 4.5 AATAGTGAGCAATATCACGATT
Shewanella baltica OS155 Sbal_1369 -128 4.5 AATAGTGAGCAATATCACGATT
Shewanella frigidimarina NCIMB 400 Sfri_2778 -313 4.7 AATAGTGAGTATTATCACATTA
Shewanella amazonensis SB2B Sama_2422 -183 4.7 TTATGTGATTTATGTCTCGATT
Shewanella loihica PV-4 Shew_2759 -171 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella pealeana ATCC 700345 Spea_2979 -113 4.3 AAGAGTGAGCGATCTCACGTTT
Shewanella halifaxensis HAW-EB4 Shal_3068 -114 4.4 AATAGTGAGCAATCTCACGTTT
Shewanella piezotolerans WP3 swp_3605 -144 4.2 AAAGGTGAGCAATCTCACGTTT
Shewanella sediminis HAW-EB3 Ssed_3317 -103 4.8 AATAGTGAGCAATCTCACATTT
Shewanella woodyi ATCC 51908 Swoo_3465 -159 4.4 AATAGTGAGCAGTCTCACGTTT
Position: -89
Score: 4.5
Sequence: AATCGAGACATAAATCACATAA
Locus tag: Sama_2423
Sama_2423 -89 4.5 AATCGAGACATAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icd
Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewanella oneidensis MR-1 SO1538 -149 4.7 ATTCGTGATATTGCTCACTATT
Shewanella putrefaciens CN-32 Sputcn32_1286 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp W3-18-1 Sputw3181_2820 -148 4.7 AATCGTGATATCGCTCACTATT
Shewanella sp ANA-3 Shewana3_2890 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-4 Shewmr4_2720 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella sp MR-7 Shewmr7_2791 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella baltica OS155 Sbal_1368 -149 4.7 AATCGTGATATTGCTCACTATT
Shewanella denitrificans OS217 Sden_2561 -143 3.8 AAAAGGGATATTTCTCACTAAT
Shewanella frigidimarina NCIMB 400 Sfri_2779 -148 4.7 TAATGTGATAATACTCACTATT
Shewanella amazonensis SB2B Sama_2423 -89 4.5 AATCGAGACATAAATCACATAA
Shewanella loihica PV-4 Shew_2760 -150 4.4 AAACGTGAGATTGCTCACTATT
Shewanella pealeana ATCC 700345 Spea_2980 -146 4.2 AAACGTGAGATCGCTCACTCTT
Shewanella halifaxensis HAW-EB4 Shal_3069 -149 4.4 AAACGTGAGATTGCTCACTATT
Shewanella piezotolerans WP3 swp_3606 -293 4.6 AAACGTGAGATTGCTCACCTTT
Shewanella sediminis HAW-EB3 Ssed_3318 -151 4.7 AAATGTGAGATTGCTCACTATT
Shewanella woodyi ATCC 51908 Swoo_3466 -148 4.3 AAACGTGAGACTGCTCACTATT
Position: -127
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: Sama_2539
Sama_2539 -127 4.3 CAGCGTGATTGCGATCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA-2
Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewanella oneidensis MR-1 SO1103 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_0940 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp W3-18-1 Sputw3181_3236 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp ANA-3 Shewana3_0938 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-4 Shewmr4_0936 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sp MR-7 Shewmr7_0974 -129 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella baltica OS155 Sbal_0924 -128 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella denitrificans OS217 Sden_0982 -128 4.3 CAGCGTGATTGCGATCGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0949 -127 4.3 CAGCGTGATTATGATCGCATTT
Shewanella amazonensis SB2B Sama_2539 -127 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella loihica PV-4 Shew_2881 -131 4.3 CAGCGTGATTGCGATCGCATTT
-73 4.1 ATGTTTGAAATCTATCTCATTT
Shewanella pealeana ATCC 700345 Spea_3103 -133 4.4 CAGCGTGATTCTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3187 -127 3.7 CAGCGTGATTACAGTCGCACTT
Shewanella piezotolerans WP3 swp_1167 -132 4.3 CAGCGTGATTGCGATCGCATTT
Shewanella sediminis HAW-EB3 Ssed_3431 -130 4.1 CAGCGTGATTGCGGTCGCATTT
Shewanella woodyi ATCC 51908 Swoo_3617 -46 4 CAGCGTGATTGCGGTCGCAAAT
Position: -87
Score: 4.2
Sequence: CTGCTTGATGAGGATCACAATT
Locus tag: Sama_2599
Sama_2599 -87 4.2 CTGCTTGATGAGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2599
Ortholog function: putative lipoprotein
Shewanella sp MR-4 Shewmr4_1948 -86 4.6 TGCTTTGATTTACATCACAATT
Shewanella sp MR-7 Shewmr7_2028 -86 4.6 TGCTTTGATTTACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_3610 -77 4 TTTGTTGATGTTGATCAAATTC
Shewanella amazonensis SB2B Sama_2599 -87 4.2 CTGCTTGATGAGGATCACAATT
Shewanella loihica PV-4 Shew_3086 -117 3.7 AAGCGTTAGCCCACTCACAAAG
Position: -137
Score: 4.2
Sequence: TTTTTTGATCCAGCGCAAATTC
Position: -118
Score: 4.2
Sequence: TTCTGTGAATCCCCTAACAAAT
Locus tag: Sama_2679
Sama_2679 -137 4.2 TTTTTTGATCCAGCGCAAATTC
-118 4.2 TTCTGTGAATCCCCTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella oneidensis MR-1 SO3780 -191 4.4 TTTATTGATCAGCATCGCATTT
Shewanella putrefaciens CN-32 Sputcn32_3106 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0838 -169 4.7 TTTTGTGAATCGGTTAACAAAA
Shewanella sp ANA-3 Shewana3_0812 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-4 Shewmr4_3127 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella sp MR-7 Shewmr7_0840 -187 4.4 TTTATTGATCTTTATCTCATTT
-167 4.5 TTTTGTGAATAGGCTAACAAAA
Shewanella baltica OS155 Sbal_3463 -170 4.3 TTTTGTGAGTCTGCTAGCAAAA
Shewanella frigidimarina NCIMB 400 Sfri_3213 -214 4.2 TATTGTGTTGCAATTAACAATG
-104 5 AAATGTGAATCAGATAACATTT
Shewanella amazonensis SB2B Sama_2679 -137 4.2 TTTTTTGATCCAGCGCAAATTC
-118 4.2 TTCTGTGAATCCCCTAACAAAT
Shewanella loihica PV-4 Shew_0613 -129 4.5 TTTTTTGATCTAGCTCAATTTT
-110 4.8 TTTTGTGAGCCTAATAACAATT
Shewanella pealeana ATCC 700345 Spea_3494 -185 4.1 TTTATTGATCTAGCTCAATTTT
-166 4.4 TTTTGTGAGTCCGATAGCAAAT
Shewanella halifaxensis HAW-EB4 Shal_3589 -233 4.1 TTTATTGATCTAGCTCAATTTT
-214 4.9 TTTTGTGAGTCCGATAACATTT
Shewanella sediminis HAW-EB3 Ssed_3849 -139 4.1 AAAATTGATCTAGCTCAATTTT
-120 4.7 TTTTGTGAATCCGTTAACAATT
Shewanella woodyi ATCC 51908 Swoo_0710 -149 4.1 TTTATTGATCTAGCTCAATTTT
-130 4.7 TTTTGTGAATCTCTTAACATTT
Position: -297
Score: 3.9
Sequence: AATTGTGATATTGAACAATATG
Locus tag: Sama_2750
Sama_2750 -297 3.9 AATTGTGATATTGAACAATATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0939
Ortholog function: split-soret diheme cytochrome c
Shewanella amazonensis SB2B Sama_2750 -297 3.9 AATTGTGATATTGAACAATATG
Shewanella pealeana ATCC 700345 Spea_3437 -327 4 AAATGAGACGTTAGTCACACTC
-249 4.5 TAATGTGACATCGTTCATGAAA
Position: -107
Score: 4.1
Sequence: TTACGTGATTCAGATAAAGCTT
Locus tag: Sama_2753
Sama_2753 -107 4.1 TTACGTGATTCAGATAAAGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaD
Ortholog function: Na+/H+ antiporter NhaD type
Shewanella oneidensis MR-1 SO0935 -278 4.3 CAATGTGATTGCTATCAACATA
Shewanella sp ANA-3 Shewana3_3348 -239 4.3 CAATGTGATTGATATCAATAAA
Shewanella sp MR-4 Shewmr4_0778 -239 4.3 CAATGTGATTGATATCAATAAA
Shewanella sp MR-7 Shewmr7_3245 -239 4.3 CAATGTGATTGATATCAATAAA
Shewanella amazonensis SB2B Sama_2753 -112 3.9 AATTTTTACGTGATTCAGATAA
-107 4.1 TTACGTGATTCAGATAAAGCTT
-87 4.7 TTTTGTGGTGTATTTCGCATTT
Shewanella loihica PV-4 Shew_0699 -227 3.8 AAGCGTGATCCTGTGCTAACTT
-77 4.2 AAACTTGAGGCGCATCAAAATT
Position: -87
Score: 4.7
Sequence: TTTTGTGGTGTATTTCGCATTT
Locus tag: Sama_2754
Sama_2754 -87 4.7 TTTTGTGGTGTATTTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0934
Ortholog function: Putative salt-induced outer membrane protein
Shewanella amazonensis SB2B Sama_2754 -112 3.9 AATTTTTACGTGATTCAGATAA
-107 4.1 TTACGTGATTCAGATAAAGCTT
-87 4.7 TTTTGTGGTGTATTTCGCATTT
Position: -78
Score: 4
Sequence: AAACTTGATCTGGATCACGAGT
Locus tag: Sama_2854
Sama_2854 -78 4 AAACTTGATCTGGATCACGAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3682 -109 3.8 TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32 Sputcn32_2981 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1 Sputw3181_0966 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4 Shewmr4_0873 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7 Shewmr7_3149 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155 Sbal_3331 -76 3.7 ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B Sama_2854 -78 4 AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4 Shew_3102 -84 4.2 AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345 Spea_3356 -102 4.7 AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4 Shal_3428 -90 4.8 AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3 swp_1054 -79 4.3 TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3 Ssed_3715 -111 4.2 CAGTGTGATCTCGATCAACTTC
Position: -106
Score: 4.4
Sequence: ACTCGTGATCCAGATCAAGTTT
Locus tag: Sama_2855
Sama_2855 -106 4.4 ACTCGTGATCCAGATCAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3683
Ortholog function: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Shewanella putrefaciens CN-32 Sputcn32_2982 -168 4.3 AGCCGTGATCTTGCTCAAAAAT
Shewanella sp W3-18-1 Sputw3181_0965 -168 4.3 AGCCGTGATCTTGCTCAAAAAT
Shewanella baltica OS155 Sbal_3332 -189 4.2 AGCCGTGATATTGCTCAAAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0937 -146 3.9 CTTAGTGATCAAAATCAAATCA
Shewanella amazonensis SB2B Sama_2855 -106 4.4 ACTCGTGATCCAGATCAAGTTT
Shewanella loihica PV-4 Shew_3103 -201 4.2 CCACTTGATCCAGATCACATTT
Shewanella pealeana ATCC 700345 Spea_3357 -113 4.6 GAGTTTGATCTAGCTCACAATT
Shewanella halifaxensis HAW-EB4 Shal_3429 -113 4.4 GAATTTGATCTCAGTCACAATT
Shewanella piezotolerans WP3 swp_1052 -113 4 GAAGTTGATCTTGCTCACAAAA
Position: -130
Score: 3.9
Sequence: AAATGTGAGGCAGTTGGAATTT
Locus tag: Sama_2882
Sama_2882 -130 3.9 AAATGTGAGGCAGTTGGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemG
Ortholog function: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewanella putrefaciens CN-32 Sputcn32_3038 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp W3-18-1 Sputw3181_0907 -207 4.5 TTTTGTGAGCAAGCTAAAATTA
-135 3.9 AATTGATATTTAAATCACCTAG
Shewanella sp ANA-3 Shewana3_0871 -317 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-4 Shewmr4_3066 -320 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella sp MR-7 Shewmr7_0906 -318 4.1 TTTTGTGAGCAAGCTAGAATTA
Shewanella baltica OS155 Sbal_3400 -316 4.4 TTTTGTGAGACAGTTAAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0813 -144 4 TTTTGCGCGGCAGTTCACATTG
-83 4.4 TGACGTGATCTGTTTCATGTAA
Shewanella amazonensis SB2B Sama_2882 -130 3.9 AAATGTGAGGCAGTTGGAATTT
Shewanella loihica PV-4 Shew_0678 -126 4.1 ATTTGTGACATCGGTAAACTTA
Shewanella pealeana ATCC 700345 Spea_0673 -140 4 TTTTGTGAGGTAGGTAAAGCTA
-98 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella halifaxensis HAW-EB4 Shal_3525 -139 4 TTTTGTGAGGTAGGTAAAGCTA
-97 3.8 CCTCGTGATCTGTTTCATGTAA
Shewanella piezotolerans WP3 swp_4046 -124 3.9 TTTTGTGAGGTAGGTAAAGGTA
-77 3.7 TGATCTGATTCAATTAAAAATA
Shewanella sediminis HAW-EB3 Ssed_3790 -120 4.9 ATTTGTGATGCAGGTAAAATTT
-78 4 TGCCGTGATCTGTTTCATGTAA
Shewanella woodyi ATCC 51908 Swoo_0793 -123 4.3 AATTGTGATATAGGTAAGAGTA
Position: -126
Score: 4.2
Sequence: AACTGTGATCTGAACCGCAGAA
Locus tag: Sama_2899
Sama_2899 -126 4.2 AACTGTGATCTGAACCGCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2899
Ortholog function: transcriptional regulator, LysR family
Shewanella amazonensis SB2B Sama_2899 -126 4.2 AACTGTGATCTGAACCGCAGAA
Shewanella loihica PV-4 Shew_3153 -137 4.2 AACTGTGATGTGATCCGCAGAA
Shewanella piezotolerans WP3 swp_4120 -157 4.2 TATTGTGACCGGTTACGCAGTA
Shewanella sediminis HAW-EB3 Ssed_3566 -184 5.1 ATGTGTGACCAGGTTCACAATT
Position: -303
Score: 3.4
Sequence: TAATTTAATAAAACAAACAAAA
Position: -285
Score: 4.1
Sequence: AAAAGAGACTTAGATCATATTT
Locus tag: Sama_2901
Sama_2901 -303 3.4 TAATTTAATAAAACAAACAAAA
-285 4.1 AAAAGAGACTTAGATCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_0312
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_2901 -285 4.1 AAAAGAGACTTAGATCATATTT
Shewanella loihica PV-4 Shew_3155 -286 3.9 AAAATAGATCTTGATCATATTT
Shewanella piezotolerans WP3 swp_4118 -97 3.3 TTATATAATGATTTTTATATTT
Position: -144
Score: 4.2
Sequence: TTATGTGATATTGTTCTGGTTT
Locus tag: Sama_2949
Sama_2949 -144 4.2 TTATGTGATATTGTTCTGGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Shewanella oneidensis MR-1 SO0862 -145 4.7 TTATGCGATATTGTTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3139 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp W3-18-1 Sputw3181_0804 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp ANA-3 Shewana3_3416 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-4 Shewmr4_0718 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-7 Shewmr7_3304 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella baltica OS155 Sbal_3502 -142 4.1 TTATGCGATATTGTTCTTAATT
Shewanella amazonensis SB2B Sama_2949 -144 4.2 TTATGTGATATTGTTCTGGTTT
Position: -319
Score: 3.8
Sequence: AACCATGATGCAGATCGAAATT
Locus tag: Sama_3003
Sama_3003 -319 3.8 AACCATGATGCAGATCGAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sel1
Ortholog function: Sel1 domain protein repeat-containing protein precursor
Shewanella oneidensis MR-1 SO0625 -267 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella putrefaciens CN-32 Sputcn32_0653 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp W3-18-1 Sputw3181_3521 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp ANA-3 Shewana3_0618 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-4 Shewmr4_0619 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella sp MR-7 Shewmr7_3411 -270 4.2 TTTAGTGATATTAGTCAACTAA
Shewanella baltica OS155 Sbal_0579 -278 4.4 TTTAGTGATTTAAGTCAACTAA
Shewanella frigidimarina NCIMB 400 Sfri_3291 -222 4.1 AACTTTGATAGAGATCGTATTT
-147 4.3 ATTTGTGATGACGGTCGACTTT
-38 4 TTATTTAATCAGCTTCATAAAT
Shewanella amazonensis SB2B Sama_3003 -319 3.8 AACCATGATGCAGATCGAAATT
Shewanella loihica PV-4 Shew_0586 -279 3.8 ATTAGTAATATATGTCAACTAA
Shewanella piezotolerans WP3 swp_0756 -153 3.8 TTTTTTGAACCTTATCAATAAA
Shewanella sediminis HAW-EB3 Ssed_3872 -296 4.3 ATTAGTGATATAAGTCAACTAA
Shewanella woodyi ATCC 51908 Swoo_0663 -298 4.3 ATTAGTGATATAAGTCAACTAA
Position: -96
Score: 3.8
Sequence: AATTTCGATCTGCATCATGGTT
Locus tag: Sama_3004
Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: -142
Score: 4
Sequence: AACTGGTATTTCGATCACAATT
Locus tag: Sama_3011
Sama_3011 -142 4 AACTGGTATTTCGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO0617 -142 4 AACTGGTATTTTGATCACAATT
Shewanella putrefaciens CN-32 Sputcn32_0645 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp W3-18-1 Sputw3181_3529 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella sp ANA-3 Shewana3_0610 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-4 Shewmr4_0611 -142 4 AACTGGTATTTTGATCACAATT
Shewanella sp MR-7 Shewmr7_3419 -308 3.8 AATTGTGTAGTTATTCATATTC
Shewanella baltica OS155 Sbal_0571 -142 4.1 AACTGGTATTTTGATCACATTT
Shewanella denitrificans OS217 Sden_3193 -136 4.1 AACTGGTATTTTGATCACATTT
Shewanella frigidimarina NCIMB 400 Sfri_3299 -137 4.1 AACTGGTATTTTGATCACATTT
Shewanella amazonensis SB2B Sama_3011 -142 4 AACTGGTATTTCGATCACAATT
Shewanella loihica PV-4 Shew_0578 -140 3.8 AACTGGTATTTTGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_3516 -138 4.1 AACTGGTATTTTGATCACATTT
Shewanella halifaxensis HAW-EB4 Shal_3610 -138 3.7 AACTGGCATTCTGATCACATTT
Shewanella piezotolerans WP3 swp_0747 -140 4.1 AACTGGTATTTTGATCACATTT
Shewanella sediminis HAW-EB3 Ssed_0809 -141 4.1 AACTGGTATTTTGATCACATTT
-121 3.9 TTTCGTTATTAATGTCACTTAA
Shewanella woodyi ATCC 51908 Swoo_0655 -172 4.3 ATATGTGCTGCTGATCTTATTT
Position: -102
Score: 3.7
Sequence: TAATGAGCCCCGCCTCAAACTT
Locus tag: Sama_3021
Sama_3021 -102 3.7 TAATGAGCCCCGCCTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: petA
Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewanella oneidensis MR-1 SO0608 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella putrefaciens CN-32 Sputcn32_3276 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_0665 -130 3.7 CACTATGATCTGCTTCTAATTT
-101 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp ANA-3 Shewana3_0601 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-4 Shewmr4_0602 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella sp MR-7 Shewmr7_3428 -132 3.7 CACTATGATCTGCTTCTAATTT
-103 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella baltica OS155 Sbal_0562 -131 3.7 CACTATGATCTGCTTCTAATTT
-102 3.7 TAATGAGCCCCGCTTCAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_3307 -129 3.8 CACTATGATCTGGTTCTAATTT
Shewanella loihica PV-4 Shew_0570 -130 4.1 TACTATGATCTGCTTCTAATTT
-101 3.9 TAATGAGCCCCGCCTCAAATTT
Shewanella pealeana ATCC 700345 Spea_3536 -78 4.2 AACTATGATCTGGTTCTAATTT
Shewanella halifaxensis HAW-EB4 Shal_3630 -128 4.6 AACTATGATCTGGCTCAAATTT
Shewanella piezotolerans WP3 swp_0793 -131 4.2 AACTATGATCTGGTTCTAATTT
Shewanella sediminis HAW-EB3 Ssed_0801 -132 4.4 TACTATGATCAAGCTCAAATTT
Shewanella woodyi ATCC 51908 Swoo_4166 -129 3.8 TACTATGATCTGCTTCTGATTT
Position: -165
Score: 3.9
Sequence: TAGAGTGATCCTCTGCAAAGAA
Position: -104
Score: 4.8
Sequence: AATTATGATGCAATTCAAATAA
Locus tag: Sama_3031
Sama_3031 -165 3.9 TAGAGTGATCCTCTGCAAAGAA
-104 4.8 AATTATGATGCAATTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3210
Ortholog function: hypothetical protein
Shewanella denitrificans OS217 Sden_3210 -122 4.3 AAGCGTGAACAGCATCACGTAA
Shewanella frigidimarina NCIMB 400 Sfri_3316 -160 4.3 ATAAGTGATCTAGTACTCACTT
-99 4.2 AAACATGATCTGGTTCAAATCA
Shewanella amazonensis SB2B Sama_3031 -165 3.9 TAGAGTGATCCTCTGCAAAGAA
-104 4.8 AATTATGATGCAATTCAAATAA
Shewanella loihica PV-4 Shew_0560 -99 4.1 AACTATGACATTGTTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3546 -105 4.3 AAGTTTGACTGCGTTCAAATAA
Shewanella halifaxensis HAW-EB4 Shal_3640 -165 3.8 TTACGTGATCGAGCGCTAGTTT
-104 4.3 AAGTTTGACAGTGTTCAAATAT
Shewanella sediminis HAW-EB3 Ssed_0791 -164 3.8 AAGTGTGATCTGACGCCGATTT
-103 3.9 AACTTTGAACTTGTTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_4177 -44 4.5 AAGTTTGAGCTTGTTCAAATAT
Position: -99
Score: 4.1
Sequence: AAGTGAGAAATAGCTCACCTAT
Locus tag: Sama_3040
Sama_3040 -99 4.1 AAGTGAGAAATAGCTCACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: bacterioferritin-associated ferredoxin
Shewanella putrefaciens CN-32 Sputcn32_3295 -125 4 AAATGTGCGCAGAGTAACAAAT
Shewanella sp W3-18-1 Sputw3181_0646 -125 4 AAATGTGCGCAGAGTAACAAAT
Shewanella sp ANA-3 Shewana3_0581 -113 4.1 AAATGTGCGATGAGTAACAAAA
Shewanella sp MR-4 Shewmr4_0582 -113 4.1 AAATGTGCGATGAGTAACAAAA
Shewanella sp MR-7 Shewmr7_3448 -113 4.1 AAATGTGCGATGAGTAACAAAA
Shewanella baltica OS155 Sbal_0542 -113 3.9 AAACGTGCGCCATGTAACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_3324 -275 3.9 TAATCTGATCCGGCTAACACCT
-253 3.8 AATATTAACCGCTTTCACAAAT
Shewanella amazonensis SB2B Sama_3040 -99 4.1 AAGTGAGAAATAGCTCACCTAT
Shewanella pealeana ATCC 700345 Spea_3555 -98 3.9 TTAGGCGATCCGACTAACAATT
Position: -197
Score: 4
Sequence: TAATGGTATTAATATCAAATAT
Locus tag: Sama_3096
Sama_3096 -197 4 TAATGGTATTAATATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_3096
Ortholog function: Outer membrane lipoprotein omp16 precursor
Shewanella amazonensis SB2B Sama_3096 -197 4 TAATGGTATTAATATCAAATAT
-40 3.7 AGTCGTTATACTGGCCACAAAA
Position: -38
Score: 4.5
Sequence: AAACTTGAGCCGCTTCACAAAT
Locus tag: Sama_3143
Sama_3143 -38 4.5 AAACTTGAGCCGCTTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spea_3717
Ortholog function: hypothetical protein
Shewanella amazonensis SB2B Sama_3143 -38 4.5 AAACTTGAGCCGCTTCACAAAT
Shewanella pealeana ATCC 700345 Spea_3717 -117 4.7 TTAGGTGATCTGCTTCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_3802 -117 4.7 TTAGGTGATCTGCCTCACAAAG
Position: -240
Score: 3.9
Sequence: CATTGTTACTCACTTCATACAT
Position: -126
Score: 3.9
Sequence: ATTTATGACCATACTCACAGAG
Locus tag: Sama_3164
Sama_3164 -240 3.9 CATTGTTACTCACTTCATACAT
-126 3.9 ATTTATGACCATACTCACAGAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0543
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO0543 -192 3.7 CGTTATGCGCTAAATCACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3331 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp W3-18-1 Sputw3181_0610 -88 4.2 ATTTTTACTCTAATTCACAAAA
Shewanella sp ANA-3 Shewana3_0541 -193 4.1 AGTTATGCGCTAAATCACAAAA
Shewanella sp MR-4 Shewmr4_0542 -192 4 AGTTATGCGCTTAATCACAAAA
Shewanella sp MR-7 Shewmr7_3488 -191 4 AGTTATGCGCTTAATCACAAAA
Shewanella baltica OS155 Sbal_0501 -201 4.8 TGTTGTGCTCTCAATCACAAAA
-88 3.9 AATTTTACCCTGATTCACAAAA
Shewanella denitrificans OS217 Sden_0657 -34 3.9 TAATATGACTAGAGTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_3534 -200 4 ATATTTGATCACAAGCACACTC
Shewanella amazonensis SB2B Sama_3164 -240 3.9 CATTGTTACTCACTTCATACAT
-126 3.9 ATTTATGACCATACTCACAGAG
Shewanella loihica PV-4 Shew_0428 -190 4.2 TAGTGTTAACTCGATCAAACAA
Shewanella pealeana ATCC 700345 Spea_3733 -197 4.2 TTTTGCTACATAGATCGCATAT
Shewanella halifaxensis HAW-EB4 Shal_3818 -235 4.7 TTTTGTTACATGGATCGCATAT
Shewanella piezotolerans WP3 swp_0532 -156 4.6 TTTTGTTACACAGATCGCATAT
Shewanella sediminis HAW-EB3 Ssed_0598 -213 4.2 TAATGTTAAATCGATCTCACTT
Shewanella woodyi ATCC 51908 Swoo_4355 -215 3.8 AATTGCTAGATAGATCTCACTT
Position: -268
Score: 3.9
Sequence: AAACGTCACATAGATCACACAC
Position: -120
Score: 3.8
Sequence: GGATCTGATCCACTTCAAATTT
Locus tag: Sama_3178
Sama_3178 -268 3.9 AAACGTCACATAGATCACACAC
-120 3.8 GGATCTGATCCACTTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4142
Ortholog function: cytochrome c family protein
Shewanella oneidensis MR-1 SO4142 -121 3.9 GAAAGTGACACACCTCAAATAA
Shewanella sp ANA-3 Shewana3_3688 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-4 Shewmr4_3511 -118 4.2 GAAAGTGATACACCTCAAATAA
Shewanella sp MR-7 Shewmr7_0441 -122 4 GAAGGTGATACACCTCAAATAA
Shewanella frigidimarina NCIMB 400 Sfri_3554 -112 4 GGATATGATCTACTTCAAATTA
Shewanella amazonensis SB2B Sama_3178 -268 3.9 AAACGTCACATAGATCACACAC
Shewanella loihica PV-4 Shew_0516 -113 4.1 GAAGGTGATCAACATCAAATTT
Shewanella halifaxensis HAW-EB4 Shal_0616 -289 3.8 AAGTGTGATCTAGATCTGTTAC
Shewanella piezotolerans WP3 swp_4577 -133 4 GAAAGTGATCGAGCTCAACTAT
Shewanella sediminis HAW-EB3 Ssed_4058 -112 4.7 AAAGGTGATCAACATCAAATTT
Position: -144
Score: 4.1
Sequence: GTTTGTGATCCGCTTCCAATAA
Locus tag: Sama_3222
Sama_3222 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase cytochrome b subunit
Shewanella oneidensis MR-1 SO0396 -144 4 TTTTGTGATCATCTTCTAAGAG
-79 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3441 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp W3-18-1 Sputw3181_0498 -144 4.3 TTTTGTGATCTTCTTCTAAGAG
-67 4.1 ATTTGTGAGCGATATTAACTTT
Shewanella sp ANA-3 Shewana3_0401 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-4 Shewmr4_0402 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-77 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella sp MR-7 Shewmr7_3623 -144 4.2 TTTTGTGATCCTCTTCTAAGAG
-76 3.9 ATTTGTGAGCGATATTAATTTT
Shewanella baltica OS155 Sbal_3937 -145 4.3 TTTTGTGATCTTCTTCTAAGAG
-105 4.1 TCAATTGATCTGGCTCACGTTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella frigidimarina NCIMB 400 Sfri_0456 -135 3.8 TTGTGTGACCCGCTTCTAACTC
-103 3.8 ATAGGTGAACATTATCACGGTT
Shewanella amazonensis SB2B Sama_3222 -144 4.1 GTTTGTGATCCGCTTCCAATAA
Shewanella pealeana ATCC 700345 Spea_0392 -138 4.7 ATTTGTGATCTTGATCTAATAG
-106 4 AAGGGTGAGTTCCTTCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella halifaxensis HAW-EB4 Shal_3899 -138 3.9 GTTTGTGATCTACGTCTAATAG
-106 4.2 TGTAGTGACACTGATCACGAAA
-94 4.1 TTTGTTGATCTATCTCACGGTT
Shewanella piezotolerans WP3 swp_0428 -106 3.8 TAGGGTGAGCAAAGTCACGATT
-94 3.9 TTTGTTGATCTATCTCACTGTT
Shewanella sediminis HAW-EB3 Ssed_4116 -126 4.5 GTTTGTGATCTGCTTCAAATAG
Shewanella woodyi ATCC 51908 Swoo_0507 -138 4.8 GTTTGTGATGTGGTTCAAAAAA
Position: -90
Score: 5.4
Sequence: AAATGTGATCTCTATCGCAAAT
Locus tag: Sama_3253
Sama_3253 -90 5.4 AAATGTGATCTCTATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella oneidensis MR-1 SO4312 -91 5 AAGTGTGATGGACCTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3586 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp W3-18-1 Sputw3181_3725 -91 5.4 AAATGTGATGCAGATCTCATTT
-51 3.8 AAGTGTTAACATAAGCACACTT
Shewanella sp ANA-3 Shewana3_0387 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-4 Shewmr4_0389 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella sp MR-7 Shewmr7_3637 -92 4.7 AAGTGTGACGAACTTCTCATTT
-52 3.9 AAGTGTTAACATGAGCACACTT
Shewanella frigidimarina NCIMB 400 Sfri_0441 -129 3.8 AAATGCTACGATGATCACCATT
-100 3.9 AAATGTGATCTTGATTGGCAAA
Shewanella amazonensis SB2B Sama_3253 -90 5.4 AAATGTGATCTCTATCGCAAAT
Shewanella loihica PV-4 Shew_0319 -88 5.1 AAGTGTGATCCAGCTCTCAAAT
Shewanella pealeana ATCC 700345 Spea_0374 -87 5.3 AAGTGTGATCTTGATCGCATTT
Shewanella halifaxensis HAW-EB4 Shal_3916 -88 5.3 AAGCGTGATGTTGATCACATTT
Shewanella piezotolerans WP3 swp_0403 -106 5.5 AAATGTGATCGGAGTCACATTT
Shewanella sediminis HAW-EB3 Ssed_4132 -90 5.2 AAGTGTGATCTTGATCTCATTT
Shewanella woodyi ATCC 51908 Swoo_0484 -98 5 AAGTGTGATCTTGGTCTCATTT
Position: -89
Score: 5.1
Sequence: ATTTGCGATAGAGATCACATTT
Locus tag: Sama_3254
Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61)
Shewanella oneidensis MR-1 SO4313 -172 3.9 GATTGTGCTCATGTTAACACTT
-132 4.5 AAATGAGAGGTCCATCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3587 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp W3-18-1 Sputw3181_3726 -173 4.1 AAGTGTGCTTATGTTAACACTT
-133 5.2 AAATGAGATCTGCATCACATTT
Shewanella sp ANA-3 Shewana3_0386 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-4 Shewmr4_0388 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella sp MR-7 Shewmr7_3638 -172 4.2 AAGTGTGCTCATGTTAACACTT
-132 4.3 AAATGAGAAGTTCGTCACACTT
Shewanella baltica OS155 Sbal_4000 -132 4.9 AAATGTGAAGTCCGTCACACTT
Shewanella denitrificans OS217 Sden_0388 -85 3.9 AAATCTGCTTTGCTTCAAACAT
Shewanella frigidimarina NCIMB 400 Sfri_0440 -167 4 AATGGTGATCATCGTAGCATTT
Shewanella amazonensis SB2B Sama_3254 -89 5.1 ATTTGCGATAGAGATCACATTT
Shewanella loihica PV-4 Shew_0318 -119 4.7 ATTTGAGAGCTGGATCACACTT
Shewanella pealeana ATCC 700345 Spea_0373 -133 5 AAATGCGATCAAGATCACACTT
Shewanella halifaxensis HAW-EB4 Shal_3917 -133 5.1 AAATGTGATCAACATCACGCTT
Shewanella piezotolerans WP3 swp_0402 -40 4.3 AAATGTAATCCGTATCGCAACA
Shewanella sediminis HAW-EB3 Ssed_4133 -133 4.9 AAATGAGATCAAGATCACACTT
Shewanella woodyi ATCC 51908 Swoo_0483 -229 4.6 AAATGAGACCAAGATCACACTT
Position: -88
Score: 4.4
Sequence: TATAGTGAGTTCAATCACAATC
Position: -63
Score: 3.4
Sequence: TGATGATATTAAGGTCACACTG
Locus tag: Sama_3282
Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
-63 3.4 TGATGATATTAAGGTCACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO4349 -86 4 TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32 Sputcn32_3615 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1 Sputw3181_3755 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3 Shewana3_0355 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-4 Shewmr4_0361 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-7 Shewmr7_3665 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella baltica OS155 Sbal_4032 -85 4.3 TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400 Sfri_0421 -85 4.1 TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4 Shew_0288 -126 3.7 CAATGTGACGTTTCGAATATAT
-77 3.8 ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3 swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3 Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908 Swoo_0441 -78 3.5 TATAGTGAATTCAATCACTGCT
Position: -94
Score: 3.6
Sequence: TTTTGTGCGCATCTTCATGCTT
Locus tag: Sama_3326
Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1 SO0324 -97 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1 Sputw3181_3804 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3 Shewana3_3845 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4 Shewmr4_3649 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7 Shewmr7_0295 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155 Sbal_4067 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -142 4 TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4 Shew_0259 -96 4.1 TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345 Spea_0303 -96 3.9 TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4 Shal_3986 -96 4 TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3 swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3 Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908 Swoo_0395 -82 3.4 TTCTGTGCGCACCTTCATAGAT
Position: -282
Score: 4.4
Sequence: TAATTTGAAGTGAATCATAAAA
Locus tag: Sama_3332
Sama_3332 -282 4.4 TAATTTGAAGTGAATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0318
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_3677 -246 3.8 AAAAGTGATAATGTTCTTAGAT
-173 3.9 TATCGTGATTAGCTTGACGTAA
-130 4 AAATATGATTTTATTAGCAGTT
Shewanella sp W3-18-1 Sputw3181_3818 -245 3.8 AAAAGTGATAATGTTCTTAGAT
-173 3.9 TATCGTGATTAGCTTGACGTAA
-130 4 AAATATGATTTTATTAGCAGTT
Shewanella sp MR-7 Shewmr7_0289 -267 4.4 ATGTGTGAATAGGGTCAAATAT
Shewanella amazonensis SB2B Sama_3332 -282 4.4 TAATTTGAAGTGAATCATAAAA
Position: -318
Score: 4.4
Sequence: TAAAGTGATCTTGATCAATATT
Locus tag: Sama_3483
Sama_3483 -318 4.4 TAAAGTGATCTTGATCAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4606
Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewanella oneidensis MR-1 SO4606 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3782 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp W3-18-1 Sputw3181_0133 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp ANA-3 Shewana3_3991 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-4 Shewmr4_3791 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-7 Shewmr7_3864 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella baltica OS155 Sbal_0154 -317 4.4 ATAAGTGATCTTGATCAATATT
Shewanella denitrificans OS217 Sden_3517 -316 4.4 AAAAGTGATCTTGATCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_0258 -321 3.9 CAAAGTGATCTTGATCAATGTT
Shewanella amazonensis SB2B Sama_3483 -318 4.4 TAAAGTGATCTTGATCAATATT
Shewanella loihica PV-4 Shew_0125 -321 4.4 AAAAGTGATCTTGATCAATATT
-264 4 TTATTTGTTATATCGCACAATT
Position: -157
Score: 4.3
Sequence: AATTGTGACGCCGCTCACTCAG
Locus tag: Sama_3523
Sama_3523 -157 4.3 AATTGTGACGCCGCTCACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella oneidensis MR-1 SO4453 -171 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp W3-18-1 Sputw3181_0242 -171 4.2 ATCTGTGACAGTCCTCACCCAA
Shewanella sp ANA-3 Shewana3_0273 -175 4.3 ATCTGTGACAGTGCTCACCCAA
Shewanella sp MR-4 Shewmr4_0272 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella sp MR-7 Shewmr7_3749 -175 4.3 AACTGTGACAGCGCTCACCCAA
Shewanella baltica OS155 Sbal_0283 -170 4.4 ATCTGTGACAGTCCTCACCTAA
Shewanella denitrificans OS217 Sden_0100 -130 4.6 TTTTGTGACACAGCTCACCTCA
Shewanella frigidimarina NCIMB 400 Sfri_0081 -159 4.7 ATTTGTGACTCGACTCACGCTA
Shewanella amazonensis SB2B Sama_3523 -157 4.3 AATTGTGACGCCGCTCACTCAG
Shewanella loihica PV-4 Shew_0086 -148 4.5 TAATGTGACACCGCTCACGAAG
Shewanella pealeana ATCC 700345 Spea_4121 -181 4.1 TTTTGTGACAGTTATCACGGCA
Shewanella halifaxensis HAW-EB4 Shal_0121 -180 4.2 TTTTGTGACAGTTATCACGCCA
Shewanella piezotolerans WP3 swp_5010 -176 4.4 TTTTGTGACACTAATCACCTCA
Shewanella sediminis HAW-EB3 Ssed_4403 -150 4.8 TTTTGTGACACCCCTCACATAC
Shewanella woodyi ATCC 51908 Swoo_4794 -135 4.7 TTTTGTGACGACACTCACATTC
Position: -180
Score: 4
Sequence: CTGAGTGAGCGGCGTCACAATT
Locus tag: Sama_3524
Sama_3524 -180 4 CTGAGTGAGCGGCGTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0389 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0243 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0274 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0273 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3748 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0284 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0101 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0082 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3524 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0087 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4120 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0122 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5009 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4402 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4793 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -171
Score: 3.9
Sequence: AAATATGCGCTGCTTAACAAAA
Locus tag: Sama_3604
Sama_3604 -171 3.9 AAATATGCGCTGCTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewanella oneidensis MR-1 SO4520 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_3506 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_0400 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp ANA-3 Shewana3_3926 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-4 Shewmr4_3730 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella sp MR-7 Shewmr7_3801 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella baltica OS155 Sbal_0219 -172 4.4 AAACATGATCTGCTTAACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -182 4.4 AAACATGATCTGCTTAACAAAT
Shewanella amazonensis SB2B Sama_3604 -171 3.9 AAATATGCGCTGCTTAACAAAA
Shewanella loihica PV-4 Shew_0073 -182 4.1 AAACATGACATGCTTAACAATT
Shewanella pealeana ATCC 700345 Spea_4126 -164 4.4 AAGTATGATCCGCTTAACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0116 -164 4.2 AAGTATGACCCGCTTAACAAAA
Shewanella piezotolerans WP3 swp_5018 -166 4.2 AAGTATGACTTACTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_4414 -203 4 AAACATGACTTGCTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4806 -184 4 AAACATGACTCGCTTAACAAAA
Position: -113
Score: 4
Sequence: TTTGATGATCCACTTCAAACTT
Locus tag: Sama_3618
Sama_3618 -113 4 TTTGATGATCCACTTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO4504 -130 4 TTTGATGATCCACTTCAAACTA
Shewanella putrefaciens CN-32 Sputcn32_0342 -140 4.1 TTTGATGATCTACTTCAAACTT
Shewanella sp W3-18-1 Sputw3181_3866 -140 4.1 TTTGATGATCTACTTCAAACTT
Shewanella sp ANA-3 Shewana3_3911 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-4 Shewmr4_3715 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella sp MR-7 Shewmr7_3786 -225 3.8 ATGCGTGATCCGTCGCAATTAT
-131 3.9 TTTGATGATCCACCTCAAACAA
Shewanella baltica OS155 Sbal_4131 -136 4.2 TTTGATGATCTAGTTCAAACTA
Shewanella frigidimarina NCIMB 400 Sfri_0052 -125 4.2 TTTCGGGATCTAGTTCAAAGTT
Shewanella amazonensis SB2B Sama_3618 -113 4 TTTGATGATCCACTTCAAACTT
Shewanella loihica PV-4 Shew_0054 -127 4.1 TTTGATGATCCAGTTCAAACTA
Shewanella pealeana ATCC 700345 Spea_4142 -123 4.2 ATAGTTGATCTAGTTCAAACTA
Shewanella halifaxensis HAW-EB4 Shal_0100 -124 4.2 ATAGTTGATCTAGTTCAAACTA
Shewanella piezotolerans WP3 swp_5034 -148 4 TTATGAGATTTCAATTACCTTT
-87 3.8 AAGTTAGCTGCAGATCACACTT
Shewanella sediminis HAW-EB3 Ssed_4426 -217 4.1 ATGCGTGATCTCTCTCATTTAA
-123 3.9 ATTGATGATCCAGCTCAAGTTA
Shewanella woodyi ATCC 51908 Swoo_4818 -148 4.2 TTTGATGATCTAGCTCAAAAAA
Position: -186
Score: 3.9
Sequence: AAGTTTGAAGTGGATCATCAAA
Locus tag: Sama_3619
Sama_3619 -186 3.9 AAGTTTGAAGTGGATCATCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4503
Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella putrefaciens CN-32 Sputcn32_0343 -187 4 AAGTTTGAAGTAGATCATCAAA
-91 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp W3-18-1 Sputw3181_3865 -131 4 AAGTTTGAAGTAGATCATCAAA
-35 4.1 AATTGCGATAGATCACGCATTT
Shewanella sp ANA-3 Shewana3_3910 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-4 Shewmr4_3714 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella sp MR-7 Shewmr7_3785 -187 4 TTGTTTGAGGTGGATCATCAAA
-91 4 AATTGCGACGGATCACGCATTT
Shewanella baltica OS155 Sbal_4130 -187 4 TAGTTTGAACTAGATCATCAAA
Shewanella frigidimarina NCIMB 400 Sfri_0051 -139 3.7 AGATTTGCGCCAGATCACGCTT
Shewanella amazonensis SB2B Sama_3619 -186 3.9 AAGTTTGAAGTGGATCATCAAA
Shewanella loihica PV-4 Shew_0053 -190 4 TAGTTTGAACTGGATCATCAAA
Shewanella pealeana ATCC 700345 Spea_4143 -183 4.2 TAGTTTGAACTAGATCAACTAT
-87 3.9 AAGTGTGATCGACCACTAACTT
-20 3.9 TTGCGTGACAAGGATAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -181 4.2 TAGTTTGAACTAGATCAACTAT
-85 4.5 AAATGTGATCTACTACTAATTT
Shewanella piezotolerans WP3 swp_5036 -86 4.2 AAGTGTGATCTGCAGCTAACTT
-25 4 AAAGGTAATTGAAATCTCATAA
Shewanella sediminis HAW-EB3 Ssed_4427 -153 3.9 TAACTTGAGCTGGATCATCAAT
-59 3.8 TTAAATGAGAGAGATCACGCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -163 4.3 TTTTTTGAGCTAGATCATCAAA
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