Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Oceanobacillus iheyensis HTE831

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 2 5
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 5 12
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 3 3
TF AseR Arsenite Arsenic resistance 1 2
TF BC2903 Multidrug resistance; Multidrug efflux 2 2
TF BceR BceS, sensor histidine kinase (bacitracin) Bacitracin resistance 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF BkdR Branched-chain amino acid degradation 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 72 36
TF CcpC Citrate Citrate metabolism 3 2
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 72 28
TF CsoR Copper ion, (Cu+) Copper resistance 2 3
TF CssR CssS, sensor histidine kinase Protein secretion stress response 2 2
TF CtsR Heat shock Heat shock response 4 3
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 7 4
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 2 4
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF DesR Cold shock response 2 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 5
TF FapR Malonyl-CoA Fatty acid biosynthesis 6 4
TF Fnr Oxygen Anaerobic metabolism 2 1
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 14 14
TF GamR Glucosamine-6-phosphate Glucosamine utilization 3 2
TF GarR Galactarate Galactarate utilization 2 2
TF GlcR 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 2 1
TF GntR D-gluconate; D-glucono-delta-lactone Gluconate utilization 1 1
TF GntR2 D-gluconate Gluconate utilization 2 2
TF GudR Glucarate utilization; Galactarate utilization 1 1
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 3
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF LexA DNA damage SOS response 22 17
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 1 1
TF LutR L-lactate Lactate utilization 1 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 3
TF MhqR 2-Methylhydroquinone and catechol resistance 4 4
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 1 2
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 2 2
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 2 2
TF PdxR Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 10 14
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 11 11
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 7 5
TF RhaR Rhamnulose-1-phosphate Rhamnose utilization 1 1
TF RmgR Rhamnogalacturonides utilization 2 1
TF SinR SinI, antirepressor protein Biofilm formation 5 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 24 16
TF UxuR Glucuronate utilization 2 2
TF XylR Xylose Xylose utilization 4 3
TF YhcF2 Multidrug resistance; Multidrug efflux 1 2
TF YodB/CatR Diamide; Quinone Oxidative stress response 5 2
TF YrkD Multidrug resistance 3 4
TF YybA Polyamine homeostasis 1 2
TF YybR/YdeP Multidrug resistance 4 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 8 8
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 3 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 3 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 4 3
RNA Purine Adenine; Guanine Purine metabolism 10 4
RNA PyrR PyrR Pyrimidine metabolism 3 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 14 12
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 3 3
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 3 2
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 3 3
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 2 2
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 3 2
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 4
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA ylbH 1 1
RNA yybP-ykoY 2 2
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