Regulons of Leptothrix cholodnii SP-6
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
Daci_3836 |
|
|
1 |
1 |
| TF |
FadP |
|
Fatty acid degradation |
6 |
3 |
| TF |
GguR |
|
Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization |
4 |
7 |
| TF |
GntR |
Gluconate |
Gluconate utilization |
3 |
4 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
5 |
3 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
1 |
1 |
| TF |
LexA |
DNA damage |
SOS response |
8 |
4 |
| TF |
LiuQ |
|
Branched-chain amino acid degradation |
2 |
4 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
9 |
7 |
| TF |
MdcY |
|
Malonate metabolism |
2 |
2 |
| TF |
ModE3 |
Tungsten |
Tungsten homeostasis |
3 |
2 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
2 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
7 |
4 |
| TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
3 |
3 |
| TF |
PdxW2 |
Pyridoxal-5-phosphate |
Pyridoxine/pyridoxal homeostasis |
2 |
1 |
| TF |
SdhR |
|
Tricarboxylic acid cycle |
5 |
4 |
| TF |
YdcR |
|
|
3 |
2 |
| TF |
Zur2 |
Zinc ion, (Zn2+) |
Zinc homeostasis |
1 |
1 |
| RNA |
SAH_riboswitch |
S-adenosylhomocysteine |
Methionine metabolism |
2 |
2 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
2 |
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