Regulons of Leptothrix cholodnii SP-6

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	Daci_3836			1	1
TF	FadP		Fatty acid degradation	6	3
TF	GguR		Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization	4	7
TF	GntR	Gluconate	Gluconate utilization	3	4
TF	HexR	2-keto-3-deoxy-6-phosphogluconate	Central carbohydrate metabolism	5	3
TF	HrcA	Heat shock	Heat shock response	2	2
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	1
TF	LexA	DNA damage	SOS response	8	4
TF	LiuQ		Branched-chain amino acid degradation	2	4
TF	LiuR		Branched-chain amino acid degradation	9	7
TF	MdcY		Malonate metabolism	2	2
TF	ModE3	Tungsten	Tungsten homeostasis	3	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	2
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	7	4
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	3	3
TF	PdxW2	Pyridoxal-5-phosphate	Pyridoxine/pyridoxal homeostasis	2	1
TF	SdhR		Tricarboxylic acid cycle	5	4
TF	YdcR			3	2
TF	Zur2	Zinc ion, (Zn2+)	Zinc homeostasis	1	1
RNA	SAH_riboswitch	S-adenosylhomocysteine	Methionine metabolism	2	2
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	3	2

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --