Regulon of PaaR in Leptothrix cholodnii SP-6
| Regulator type: | Transcription factor |
| TF locus tag: | Lcho_2402 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Comamonadaceae
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -115
Score: 5.5 Sequence: CTTGACCGACCGGTAGGTAAAT
Locus tag: Lcho_2406
Name: paaY2 Funciton: phenylacetic acid degradation protein PaaY |
|||
|
paaY2
|
phenylacetic acid degradation protein PaaY
|
||
|
Position: -42
Score: 5.8 Sequence: ATTTACCTACCGGTCGGTCAAG
Locus tag: Lcho_2405
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Lcho_2404
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: Lcho_2403
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Lcho_2402
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
Locus tag: Lcho_2401
Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component |
|||
|
paaF
|
Enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
paaY
|
thioesterase superfamily protein
|
||
|
paaK
|
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
|
||
|
paaR
|
Transcriptional regulator of phenylacetic acid degradation, TetR family
|
||
|
livK
|
Putative branched-chain amino acid ABC transporter, substrate-binding component
|
||
|
Position: -48
Score: 6.3 Sequence: ATTTACCGACCGGACGGTCAAT
Locus tag: Lcho_3574
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Lcho_3573
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Lcho_3572
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Lcho_3571
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Lcho_3570
Name: null Funciton: hypothetical protein
Locus tag: Lcho_3569
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Lcho_3568
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
|||
|
paaA
|
Phenylacetate-CoA oxygenase, PaaA subunit
|
||
|
paaB
|
Phenylacetate-CoA oxygenase, PaaB subunit
|
||
|
paaC
|
Phenylacetate-CoA oxygenase, PaaC subunit
|
||
|
paaD
|
Phenylacetate-CoA oxygenase, PaaD subunit
|
||
|
hypothetical protein
|
|||
|
paaE
|
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
|
||
|
paaZ
|
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |