Regulon of LiuQ in Leptothrix cholodnii SP-6
| Regulator type: | Transcription factor |
| TF locus tag: | Lcho_2120 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuQ - Comamonadaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuQ
- By taxonomy - Comamonadaceae
- By TF family - TetR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
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Position: -131
Score: 5 Sequence: ATGAGCTTTACTCAA
Position: -18
Score: 5.5 Sequence: TTGAGTGATACTCAA
Locus tag: Lcho_2120
Name: liuQ Funciton: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family |
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liuQ
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Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
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Position: -175
Score: 5.5 Sequence: TTGAGTATCACTCAA
Position: -62
Score: 5 Sequence: TTGAGTAAAGCTCAT
Locus tag: Lcho_2119
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Locus tag: Lcho_2118
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Lcho_2117
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Lcho_2116
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Lcho_2115
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |