Regulon of LiuQ in Leptothrix cholodnii SP-6

Properties
Regulator type:	Transcription factor
TF locus tag:	Lcho_2120
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuQ - Comamonadaceae
Statistics of regulated genes:
- Genes	6
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By trascription factor - LiuQ
By taxonomy - Comamonadaceae
By TF family - TetR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -131 Score: 5 Sequence: ATGAGCTTTACTCAA Position: -18 Score: 5.5 Sequence: TTGAGTGATACTCAA Locus tag: Lcho_2120 Name: liuQ Funciton: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
	Lcho_2120	liuQ	Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
Position: -175 Score: 5.5 Sequence: TTGAGTATCACTCAA Position: -62 Score: 5 Sequence: TTGAGTAAAGCTCAT Locus tag: Lcho_2119 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Lcho_2118 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: Lcho_2117 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: Lcho_2116 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: Lcho_2115 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	Lcho_2119	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Lcho_2118	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	Lcho_2117	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	Lcho_2116	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	Lcho_2115	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD