Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LiuQ - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1 6 2
Leptothrix cholodnii SP-6 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
liuQ
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
*
Methylibium petroleiphilum PM1

Site:
position = -176
score = 5.1281
sequence = ATGAGTTTCACTCAA

Site:
position = -75
score = 5.36516
sequence = TTGAGCTTTACTCAA

Gene: Mpe_A3361: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
*
Leptothrix cholodnii SP-6

Site:
position = -131
score = 4.988
sequence = ATGAGCTTTACTCAA

Site:
position = -18
score = 5.54039
sequence = TTGAGTGATACTCAA

Gene: Lcho_2120: Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
Predicted transcriptional regulator LiuQ of leucine degradation pathway, TetR family
 
CRON 2.
liuA
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4371: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Acidovorax sp. JS42

Gene: Ajs_3779: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4406: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Delftia acidovorans SPH-1

Gene: Daci_5991: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0455: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Polaromonas sp. JS666

Gene: Bpro_4190: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3842: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Variovorax paradoxus S110

Gene: Vapar_4724: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1333: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Methylibium petroleiphilum PM1

Site:
position = -114
score = 5.36516
sequence = TTGAGTAAAGCTCAA

Site:
position = -13
score = 5.1281
sequence = TTGAGTGAAACTCAT

Gene: Mpe_A3360: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
*
Leptothrix cholodnii SP-6

Site:
position = -175
score = 5.54039
sequence = TTGAGTATCACTCAA

Site:
position = -62
score = 4.988
sequence = TTGAGTAAAGCTCAT

Gene: Lcho_2119: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
liuB
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4354: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Acidovorax sp. JS42

Gene: Ajs_3763: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4428: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Delftia acidovorans SPH-1

Gene: Daci_5973: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0471: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Polaromonas sp. JS666

Gene: Bpro_4160: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3832: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Variovorax paradoxus S110

Gene: Vapar_4722: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4244: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3359: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2118: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4353: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Acidovorax sp. JS42

Gene: Ajs_3761: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4430: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Delftia acidovorans SPH-1

Gene: Daci_5972: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0473: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Polaromonas sp. JS666

Gene: Bpro_4159: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3831: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Variovorax paradoxus S110

Gene: Vapar_4721: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1346: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3358: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2117: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4351: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Acidovorax sp. JS42

Gene: Ajs_3759: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4432: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Delftia acidovorans SPH-1

Gene: Daci_5970: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0475: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Polaromonas sp. JS666

Gene: Bpro_4157: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3830: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Variovorax paradoxus S110

Gene: Vapar_4719: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0847: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3356: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2116: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4349: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Acidovorax sp. JS42

Gene: Ajs_3757: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4434: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Delftia acidovorans SPH-1

Gene: Daci_5964: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0477: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Polaromonas sp. JS666

Gene: Bpro_4155: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3824: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Variovorax paradoxus S110

Gene: Vapar_4710: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0514: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3354: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Leptothrix cholodnii SP-6

Gene: Lcho_2115: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Mpe_A3357
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4352: Probable transmembrane protein
 
Acidovorax sp. JS42

Gene: Ajs_3760: Probable transmembrane protein
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4431: Probable transmembrane protein
 
Delftia acidovorans SPH-1

Gene: Daci_5971: Probable transmembrane protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0474: Probable transmembrane protein
 
Polaromonas sp. JS666

Gene: Bpro_4158: Probable transmembrane protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4720: Probable transmembrane protein
 
Verminephrobacter eiseniae EF01-2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A3357: Probable transmembrane protein
 
Leptothrix cholodnii SP-6
Probable transmembrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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