Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Roseovarius nubinhibens ISM

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 4 4
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 12 10
TF Chvl 1 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF EutR Ectoine utilization 4 6
TF EutR Ethanolamine Ethanolamine utilization 2 2
TF HrcA Heat shock Heat shock response 1 1
TF HutC cis-Urocanic acid Histidine utilization 3 3
TF HypR 4-hydroxyproline Proline and 4-hydrohyproline utilization 4 1
TF HypR2 4-hydroxyproline Proline and 4-hydrohyproline utilization 4 3
TF Irr Heme Iron homeostasis 7 4
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 11 11
TF LexA DNA damage SOS response 9 8
TF LiuR Branched-chain amino acid degradation 1 1
TF MetR Homocysteine Methionine biosynthesis 3 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 3 1
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 6
TF Pden_3389 Glycolate utilization; Lactate utilization 2 4
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 1 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnF Phosphonate utilization 2 2
TF RutR Uracil Pyrimidine utilization 5 4
TF SPO0590 Sugar utilization 2 4
TF SoxR Paraquat Superoxide stress response 2 2
TF TauR Taurine Taurine utilization 5 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 7 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA S15 Ribosome biogenesis 1 1
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 3 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 2
RNA mini-ykkC Multidrug resistance 1 1
RNA serC Serine biosynthesis 1 1
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise