Regulon of IscR in Roseovarius nubinhibens ISM
| Regulator type: | Transcription factor |
| TF locus tag: | ISM_16015 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron-sulfur cluster biogenesis; Iron homeostasis |
| Effector: | Iron-sulfur cluster redox state; Iron ion, (Fe2+) |
| Regulog: | IscR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - IscR
- By taxonomy - Rhodobacterales
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By effector - Iron ion, (Fe2+)
- By pathway - Iron-sulfur cluster biogenesis
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -46
Score: 4.5 Sequence: CCCGAGTGAATTGATCGGA
Locus tag: ISM_15910
Name: fbpC Funciton: Ferric iron ABC transporter, ATP-binding protein |
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fbpC
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Ferric iron ABC transporter, ATP-binding protein
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Position: -132
Score: 4 Sequence: TCCGACTATTTCATTTAGG
Locus tag: ISM_04265
Name: Mlr1156 Funciton: Mlr1156 protein
Locus tag: ISM_04260
Name: exbB Funciton: Ferric siderophore transport system, biopolymer transport protein ExbB
Locus tag: ISM_04255
Name: exbD1 Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: ISM_04250
Name: exbD2 Funciton: Ferric siderophore transport system, periplasmic binding protein ExbD
Locus tag: ISM_04245
Name: tonB Funciton: Ferric siderophore transport system, periplasmic binding protein TonB |
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Mlr1156
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Mlr1156 protein
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exbB
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Ferric siderophore transport system, biopolymer transport protein ExbB
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exbD1
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Ferric siderophore transport system, periplasmic binding protein ExbD
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exbD2
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Ferric siderophore transport system, periplasmic binding protein ExbD
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tonB
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Ferric siderophore transport system, periplasmic binding protein TonB
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Position: -117
Score: 4.9 Sequence: CCTGAGTAAAAGACTCAGG
Locus tag: ISM_00940
Name: OB2597_05460 Funciton: TonB-dependent hemin, ferrichrome receptor |
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OB2597_05460
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TonB-dependent hemin, ferrichrome receptor
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Position: -100
Score: 4.1 Sequence: CTTGACTTTTTGCCTCAGG
Locus tag: ISM_05670
Name: ISM_05670 Funciton: Outer membrane receptor proteins, mostly Fe transport |
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ISM_05670
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Outer membrane receptor proteins, mostly Fe transport
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Position: -81
Score: 4.9 Sequence: TCCGACTCTTTTTGTCAGA
Locus tag: ISM_15940
Name: SKA53_15391 Funciton: hypothetical protein
Locus tag: ISM_15945
Name: TM1040_2633 Funciton: hypothetical protein |
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SKA53_15391
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hypothetical protein
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TM1040_2633
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hypothetical protein
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Position: -157
Score: 4.4 Sequence: CTTGACAGTTTTAGTCTGA
Locus tag: ISM_04235
Name: hmuR Funciton: TonB-dependent hemin , ferrichrome receptor |
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hmuR
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TonB-dependent hemin , ferrichrome receptor
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Position: -138
Score: 5.4 Sequence: CTTGACTAAATTAGTCGGA
Position: -104
Score: 5.2 Sequence: TCCGAGTATTTTAGTCGGA
Locus tag: ISM_05125
Name: fbpA Funciton: Ferric iron ABC transporter, iron-binding protein |
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fbpA
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Ferric iron ABC transporter, iron-binding protein
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Position: -82
Score: 4.9 Sequence: CCCGAGTATTTCACTCAGG
Locus tag: ISM_04365
Name: irpA Funciton: Iron-regulated protein A precursor
Locus tag: ISM_04360
Name: COG3488 Funciton: Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
Locus tag: ISM_04355
Name: COG3489 Funciton: Predicted periplasmic lipoprotein
Locus tag: ISM_04350
Name: COG3490 Funciton: Uncharacterised conserved protein UCP028101 |
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irpA
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Iron-regulated protein A precursor
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COG3488
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Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites
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COG3489
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Predicted periplasmic lipoprotein
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COG3490
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Uncharacterised conserved protein UCP028101
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Position: -205
Score: 5.2 Sequence: TCTGACTAAAAAAGTCGGA
Position: -178
Score: 4.8 Sequence: TCTGACAGAATAAATCAGA
Locus tag: ISM_01000
Name: hemP Funciton: Hemin uptake protein HemP
Locus tag: ISM_00995
Name: bfd Funciton: Bacterioferritin-associated ferredoxin
Locus tag: ISM_00990
Name: bfr Funciton: Bacterioferritin (cytochrome b1) |
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hemP
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Hemin uptake protein HemP
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bfd
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Bacterioferritin-associated ferredoxin
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bfr
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Bacterioferritin (cytochrome b1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |