# TF - NrdR: ISM_13025
>ISM_14850(nrdJ) Score=5.3 Pos=-249 [Roseovarius nubinhibens ISM]
CTACAATATATAGTGT
# TF - Zur: ISM_14175
>ISM_14180(znuA) Score=5.5 Pos=-115 [Roseovarius nubinhibens ISM]
GATATGTTATATTATCTCATCTA
>ISM_00325(yciC) Score=5.4 Pos=-71 [Roseovarius nubinhibens ISM]
GTGATGTTATACTATAACAGATT
>ISM_05645(zinT) Score=5.2 Pos=-34 [Roseovarius nubinhibens ISM]
GCTACGTTATATCATAACTACTT
>ISM_14175(zur) Score=5.6 Pos=-54 [Roseovarius nubinhibens ISM]
TAGATGAGATAATATAACATATC
# TF - HutC: ISM_02745
>ISM_02740(hutF) Score=5.2 Pos=-95 [Roseovarius nubinhibens ISM]
ATTATGTCCAGACATAAC
>ISM_05640(hutI) Score=5.7 Pos=-86 [Roseovarius nubinhibens ISM]
ATTATGTATGGACATAAT
>ISM_02745(hutC) Score=4 Pos=-67 [Roseovarius nubinhibens ISM]
TCTATGTGCGTACAAATT
# TF - HypR: ISM_10296
>ISM_10311(COG4664) Score=3.2 Pos=-91 [Roseovarius nubinhibens ISM]
TTGTGTCGACTCAA
# TF - IscR: ISM_16015
>ISM_15940(SKA53_15391) Score=4.9 Pos=-81 [Roseovarius nubinhibens ISM]
TCCGACTCTTTTTGTCAGA
>ISM_05670(ISM_05670) Score=4.1 Pos=-100 [Roseovarius nubinhibens ISM]
CTTGACTTTTTGCCTCAGG
>ISM_00940(OB2597_05460) Score=4.9 Pos=-117 [Roseovarius nubinhibens ISM]
CCTGAGTAAAAGACTCAGG
>ISM_04265(Mlr1156) Score=4 Pos=-132 [Roseovarius nubinhibens ISM]
TCCGACTATTTCATTTAGG
>ISM_04235(hmuR) Score=4.4 Pos=-157 [Roseovarius nubinhibens ISM]
CTTGACAGTTTTAGTCTGA
>ISM_01000(hemP) Score=5.2 Pos=-205 [Roseovarius nubinhibens ISM]
TCTGACTAAAAAAGTCGGA
>ISM_01000(hemP) Score=4.8 Pos=-178 [Roseovarius nubinhibens ISM]
TCTGACAGAATAAATCAGA
>ISM_04365(irpA) Score=4.9 Pos=-82 [Roseovarius nubinhibens ISM]
CCCGAGTATTTCACTCAGG
>ISM_15910(fbpC) Score=4.5 Pos=-46 [Roseovarius nubinhibens ISM]
CCCGAGTGAATTGATCGGA
>ISM_05125(fbpA) Score=5.2 Pos=-104 [Roseovarius nubinhibens ISM]
TCCGAGTATTTTAGTCGGA
>ISM_05125(fbpA) Score=5.4 Pos=-138 [Roseovarius nubinhibens ISM]
CTTGACTAAATTAGTCGGA
# TF - Irr: ISM_00785
>ISM_16015(iscR) Score=6.3 Pos=-129 [Roseovarius nubinhibens ISM]
ACTTTAGAACTGTTCTAAACA
>ISM_02850(fssA) Score=5.6 Pos=-77 [Roseovarius nubinhibens ISM]
TTTTTAGAATCGTTCCAAATC
>ISM_08740(mbfA) Score=5.9 Pos=-39 [Roseovarius nubinhibens ISM]
AGTTTAGAATCATTCTAATTG
>ISM_16225(katG) Score=4.6 Pos=-92 [Roseovarius nubinhibens ISM]
CGCTTAGAACGATTCCAAGGC
# TF - NtrC: ISM_16635
>ISM_08965(glnK) Score=4.1 Pos=-175 [Roseovarius nubinhibens ISM]
CGCCCAATTTCTAGTCA
>ISM_16645(nifR3) Score=4.7 Pos=-18 [Roseovarius nubinhibens ISM]
TGCACAAGGATTAAGCA
>ISM_16645(nifR3) Score=5.1 Pos=-108 [Roseovarius nubinhibens ISM]
TGCTTAAATTTTGTGCA
>ISM_08965(glnK) Score=4.4 Pos=-146 [Roseovarius nubinhibens ISM]
TGCACAAAAAATAGTCG
>ISM_05410(glnB) Score=4.7 Pos=-161 [Roseovarius nubinhibens ISM]
TGCCCAAATTTCGGGCG
>ISM_05410(glnB) Score=5 Pos=-141 [Roseovarius nubinhibens ISM]
TGCCTAAATAATGTGCA
# TF - Mur: ISM_15430
>ISM_02005(mntX) Score=5.7 Pos=-29 [Roseovarius nubinhibens ISM]
ATTGAGAATAATTCGCAAT
# TF - LexA: ISM_14765
>ISM_13365(uvrD) Score=0.4 Pos=-56 [Roseovarius nubinhibens ISM]
GAACAATCGCGGAAC
>ISM_14765(lexA) Score=-0.5 Pos=-58 [Roseovarius nubinhibens ISM]
ACACAAAACGAGAAC
>ISM_14955(recA) Score=0.7 Pos=-90 [Roseovarius nubinhibens ISM]
GAACAGCACGCGAAC
>ISM_03450(ruvC) Score=5.2 Pos=-60 [Roseovarius nubinhibens ISM]
GTTCTTGTTTCGTGC
>ISM_10865(uvrA) Score=4.9 Pos=-77 [Roseovarius nubinhibens ISM]
GTTCACAGTTTGTTC
>ISM_13455(PF04055) Score=5.1 Pos=-27 [Roseovarius nubinhibens ISM]
GTTCGCGGTTTGTTC
>ISM_14955(recA) Score=5.3 Pos=-118 [Roseovarius nubinhibens ISM]
GTTCTCATTTTGTGC
>ISM_00090(PF06319) Score=5.1 Pos=-26 [Roseovarius nubinhibens ISM]
GTTCCCGCTTCGTTC
# TF - LiuR: ISM_02035
>ISM_02035(liuR) Score=5.8 Pos=-79 [Roseovarius nubinhibens ISM]
ACTTACGTAAACGTCAAT
# TF - RutR: ISM_13625
>ISM_13640(pydX) Score=6.2 Pos=-75 [Roseovarius nubinhibens ISM]
ATTTTACCAATTGATAAAAT
>ISM_13625(rutR) Score=6 Pos=-147 [Roseovarius nubinhibens ISM]
ATTTTACCATTTGGTAAAGT
>ISM_11210(pytM) Score=5.8 Pos=-53 [Roseovarius nubinhibens ISM]
TCTTTACCGTTTGGTAAAAT
>ISM_13620(pydC) Score=5.9 Pos=-41 [Roseovarius nubinhibens ISM]
ACTTTACCAAATGGTAAAAT
# TF - PhnF: ISM_06265
>ISM_06260(phnG) Score=5.6 Pos=-39 [Roseovarius nubinhibens ISM]
TTGTATAATAACATAGACAA
>ISM_06265(phnF) Score=5.5 Pos=-94 [Roseovarius nubinhibens ISM]
TTGTCTATGTTATTATACAA
# TF - EutR: ISM_16300
>ISM_16300(eutR) Score=7.4 Pos=-63 [Roseovarius nubinhibens ISM]
ATTGTATTGATACAAT
>ISM_16300(eutR) Score=7.3 Pos=-191 [Roseovarius nubinhibens ISM]
ATTGTACCAATACAAT
>ISM_16300(eutR) Score=7.2 Pos=-120 [Roseovarius nubinhibens ISM]
ATTGTTATAATACAAT
>ISM_16305(yjjS) Score=7.4 Pos=-164 [Roseovarius nubinhibens ISM]
ATTGTATCAATACAAT
>ISM_16305(yjjS) Score=7.2 Pos=-108 [Roseovarius nubinhibens ISM]
ATTGTATTATAACAAT
>ISM_16305(yjjS) Score=7.3 Pos=-36 [Roseovarius nubinhibens ISM]
ATTGTATTGGTACAAT
# TF - EutR: ISM_11450
>ISM_11450(eutR) Score=5.8 Pos=-109 [Roseovarius nubinhibens ISM]
TTTGAAAAAATGTTTTCACA
>ISM_11445(eutA) Score=5.8 Pos=-62 [Roseovarius nubinhibens ISM]
TGTGAAAACATTTTTTCAAA
# RNA - mini-ykkC
>ISM_07275(COG4125) Score=26 Pos=-76 [Roseovarius nubinhibens ISM]
CATGCGAGGACGACCTCCGCCCCATGCAACCCGGGGTTTTTAGATTCGGGACGGCCCGA
# RNA - Cobalamin
>ISM_12600(cfrX) Score=128 Pos=-321 [Roseovarius nubinhibens ISM]
GCATTGTCGCCCCTGATGGTTGCCCGGGACGAATCCGGGCTGAAAAGGGAACGCGGTGCGGGTCTGACCCAATTCCGCGGCTGCCCTCGCAACTGTAAGCGGCGAATGTCTCGCACCATGCCACTGGCCCTCGGGCTGGGAAGGCGCGACCCATGATGACCCGCAAGCCAGGAGACCTGCCATCCAGGGCGCTGTCCGGCG
>ISM_12665(cbtC) Score=117.5 Pos=-235 [Roseovarius nubinhibens ISM]
ATCTCCTTCCATTCGATGGCGTCACGCAAGTGGCTGAAAAAGGGAACCGGGTGAAACCCCCGGACTGCCCCCGCAACTGTAAGCGGCGAGCGTTTAGGAAAACCACTGGCCCGAGCTGGGCTGGGAAGGCCGACAACGCGACGACCCGTAAGTCAGGAAACCTGCCATTGATCATCTGCCGCGAGA
>ISM_07745(btuF) Score=109.4 Pos=-322 [Roseovarius nubinhibens ISM]
CGGGTGTCACTGCGGCGTCGGTTTTCGATGGAAACTAATAGGGAATCCGCGGCGTCCAGCAGGGCGTCAACCGGAACTGCCCCCGCAACTGTAGGCGGCGAGCTGCATCTTCAGAACCACTGGGCCGAGGTCTGGGAAGGGAAGATGACGCCATGAGCCGTGAGTCAGGAGACCTGCCGACGCATAACCTGAAACC
>ISM_13370(ISM_13370) Score=104.7 Pos=-341 [Roseovarius nubinhibens ISM]
TAGGCTAAAGCTCTCAGGGTGCCGTCCTCGCAAGGGGCCGGAGAATTGGGAAGCCGGTGCAAGTCCGGCGCTGCCCCCGCAACGGTAAGGAGGGGTGGTTGGGCGATATGCCACTGGGCCGCGAGGCCTGGGAAGGTAGCCCGATCACAGGCCAGATGGCCGTCCACCAAGCCCGGAAACCAGCCATGAGACAACGTCAGAACCG
# RNA - S15
>ISM_06390(rpsO) Score=18.2 Pos=-63 [Roseovarius nubinhibens ISM]
AGGACCCTGCTGGACGACATCCCGGCTTGTGCCCTTCACATCCAACTCTGAAAGGAGACCCCGATGTCGATCACTGTTGAAGAAAAAGCCCGCGTGATGAAAGAATTCGCAACCAAGGAC
# RNA - serC
>ISM_10531(serC) Score=67.9 Pos=-53 [Roseovarius nubinhibens ISM]
TCCGCGGGACACCCTTCCCCAACGAAGGGCGCTTATCTGGAAGGATAGCATCA
# RNA - SAM_alpha
>ISM_06080(metY) Score=51.4 Pos=-133 [Roseovarius nubinhibens ISM]
ATCCACATCGTGGCGATTTGTTACCGGATTGCGGGCCACGTTAATCCCTCCGCTAAAAGGTCAGGACCAAGGCCCCCT
# RNA - TPP
>ISM_10621(thiC) Score=52.2 Pos=-223 [Roseovarius nubinhibens ISM]
ATTGCACGCAGGGGGGTCCCGCCCAGGGGACTGAGAGGCTGACAGTGCAGATGCACGGTGACGCGACCCTTTGAACCTGACCCAGTTGATACTGGCGTAGGAAGCTAGGTGCGCTCACTGGC
>ISM_10586(thiB) Score=56 Pos=-150 [Roseovarius nubinhibens ISM]
TGGAGACCTCGGGGTGTTCCTGTGGGCCGCTGGCCCGTGCGAACTGAGACGCTGTGCGAACCCGTTGAACCTGAACCGGCTAGAACCGGCGGAGGGAAGGATTGCACGACATTGCC
# RNA - FMN
>ISM_10606(ribH2) Score=93.8 Pos=-226 [Roseovarius nubinhibens ISM]
GCGGCACTCTCAGGGCGGGGCGAAACTCCCCACCGGCGGTAACGGGGCCAGCCCCCGAAGCCCGCGAGCGGCCCCGGTTCTCCGGGGTGTCAGCAGACCCGGTGCAATTCCGGGGCCGACGGTCATAGTCCGGATGGAAGAGAGCGACA
# RNA - Glycine
>ISM_05735(gcvT) Score=42.2 Pos=-173 [Roseovarius nubinhibens ISM]
ATCGAGGAACTCTGGAGAGTGCGCGGATCAGCCCGCGCCGCCGAAGGGATAGCGATCTCAGGCGAAAGGACAGAGGGGGCATC
>ISM_05735(gcvT) Score=49.6 Pos=-257 [Roseovarius nubinhibens ISM]
AGATATCGAAACGGGAGAACCGGCCATGCCGGTGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCCAAAGGACCGCTTCGATA
# RNA - SAM-SAH
>ISM_00720(metK) Score=53.2 Pos=-90 [Roseovarius nubinhibens ISM]
ATCCCCGTCACAACGGCTTCCTGGCGTGGCGGATGACCCTAATGGAGCG
# TF - HrcA: ISM_06690
>ISM_05760(groS) Score=7.2 Pos=-79 [Roseovarius nubinhibens ISM]
TTAGCACTCGGAGGGACTGAGTGCTAA
# TF - MntR: ISM_17630
>ISM_17630(mntR) Score=5.4 Pos=-70 [Roseovarius nubinhibens ISM]
AAAGTTAGCTTCGGCTAATAAT
>ISM_17635(COG2132) Score=5.4 Pos=-278 [Roseovarius nubinhibens ISM]
ATTATTAGCCGAAGCTAACTTT
# TF - SoxR: ISM_04630
>ISM_04625(PF00903) Score=6.5 Pos=-62 [Roseovarius nubinhibens ISM]
ATCTCAAGTTAACTTGAGAA
>ISM_04630(soxR) Score=6.5 Pos=-36 [Roseovarius nubinhibens ISM]
TTCTCAAGTTAACTTGAGAT
# TF - CueR: ISM_11680
>ISM_17460(copZ) Score=5.1 Pos=-51 [Roseovarius nubinhibens ISM]
ACCTTCCCATAGGGGGACGGC
>ISM_17435(copA) Score=5 Pos=-128 [Roseovarius nubinhibens ISM]
ACCTTCCAGTTGCTGGAAGCC
# TF - CadR-PbrR: ISM_17535
>ISM_17525(PF01841) Score=5.6 Pos=-64 [Roseovarius nubinhibens ISM]
AAGCTATAGTGACTATAGCAA
>ISM_17615(cadA) Score=5.2 Pos=-201 [Roseovarius nubinhibens ISM]
AAGCTCTAGCTACTGTAGGGG
>ISM_17625(PF03734) Score=5.6 Pos=-152 [Roseovarius nubinhibens ISM]
AACCTCTAGCCACTAGAAGTC
>ISM_17535(cadR) Score=6 Pos=-129 [Roseovarius nubinhibens ISM]
ATCCTCTAGCAGCTAGAGGTT
# TF - SPO0590: ISM_05005
>ISM_05010(hisD1) Score=6.2 Pos=-109 [Roseovarius nubinhibens ISM]
AAATGTAAGCGCTTGCAATA
>ISM_05010(hisD1) Score=6.5 Pos=-86 [Roseovarius nubinhibens ISM]
CCATGCAAGCGCTTACATTG
>ISM_05005(SPO0590) Score=6.2 Pos=-79 [Roseovarius nubinhibens ISM]
TATTGCAAGCGCTTACATTT
>ISM_05005(SPO0590) Score=6.5 Pos=-102 [Roseovarius nubinhibens ISM]
CAATGTAAGCGCTTGCATGG
# TF - CceR (GapR): ISM_08560
>ISM_02615(pykA) Score=5.1 Pos=-82 [Roseovarius nubinhibens ISM]
TGATGTTAGCGATAACGGTA
>ISM_13535(pckA) Score=5.3 Pos=-174 [Roseovarius nubinhibens ISM]
CGCTGGTTGCGCTAACGTCC
>ISM_13535(pckA) Score=4.6 Pos=-154 [Roseovarius nubinhibens ISM]
AATTGGTTGCGCTAACTCAG
>ISM_10930(gapA) Score=4.6 Pos=-105 [Roseovarius nubinhibens ISM]
GAAATTTATCGCTAACAAGG
>ISM_03480(tal) Score=3.6 Pos=-123 [Roseovarius nubinhibens ISM]
GGCGGTTTGCGGCAAATTAT
>ISM_08560(cceR) Score=4.6 Pos=-48 [Roseovarius nubinhibens ISM]
CACCGTTCGCGATAACATTT
>ISM_16480(eno) Score=5.2 Pos=-85 [Roseovarius nubinhibens ISM]
TCGTGTTAGCGATAACATAT
>ISM_16480(eno) Score=4.1 Pos=-126 [Roseovarius nubinhibens ISM]
AACCGTTACCGGCATCATCG
>ISM_04665(fba) Score=4.6 Pos=-80 [Roseovarius nubinhibens ISM]
AGGCGTTAGCGCCACCAAGA
>ISM_11730(atpH) Score=4.6 Pos=-302 [Roseovarius nubinhibens ISM]
TTACGATAGCGGTAACGCCG
# TF - Chvl: ISM_13540
>ISM_13540(chvI) Score=7.3 Pos=-106 [Roseovarius nubinhibens ISM]
GAGTCG------------GATTCG
# TF - HypR2: ISM_08245
>ISM_08240(hypH) Score=5.2 Pos=-59 [Roseovarius nubinhibens ISM]
TTTTGGATACATTA
>ISM_08255(hypD) Score=5.2 Pos=-165 [Roseovarius nubinhibens ISM]
TTTTGTATCCATTA
>ISM_08245(hypR2) Score=5.2 Pos=-13 [Roseovarius nubinhibens ISM]
TAATGTATCCAAAA
# TF - MetR: ISM_08345
>ISM_08350(metF) Score=4.1 Pos=-66 [Roseovarius nubinhibens ISM]
ATGAATTTGCCTAAT
>ISM_08345(metR) Score=4.1 Pos=-48 [Roseovarius nubinhibens ISM]
ATTAGGCAAATTCAT
# TF - PdxQ3: ISM_17235
>ISM_17230(PF07690) Score=11.6 Pos=-91 [Roseovarius nubinhibens ISM]
GCTGTCCT-(1)-AGGACAAT-(6)-ATTGTCAT
# TF - Pden_3389: ISM_03985
>ISM_03985(Pden_3389) Score=4.8 Pos=-110 [Roseovarius nubinhibens ISM]
ATAATGAATGCATTTT
>ISM_03985(Pden_3389) Score=4.6 Pos=-14 [Roseovarius nubinhibens ISM]
ATAGTGAATGCAAAAT
>ISM_03990(sgaA) Score=4.6 Pos=-238 [Roseovarius nubinhibens ISM]
ATTTTGCATTCACTAT
>ISM_03990(sgaA) Score=4.8 Pos=-142 [Roseovarius nubinhibens ISM]
AAAATGCATTCATTAT
# TF - PdxW: ISM_11775
>ISM_11780(pdxO) Score=13.5 Pos=-94 [Roseovarius nubinhibens ISM]
AATTGGACT-(15)-TACTGGCCA-(8)-AGACCAATA
# TF - TauR: ISM_10755
>ISM_09816 Score=9.1 Pos=-113 [Roseovarius nubinhibens ISM]
CTGGTGTTAT-------------CTGGCCCTAT
>ISM_10690(xsc) Score=9.4 Pos=-81 [Roseovarius nubinhibens ISM]
CTGGCTCTAT-------------CTGGCCCTAT