Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bradyrhizobium japonicum USDA 110

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF Atu5239 1 1
TF BioR Biotin biosynthesis 2 4
TF Bll2166 2 3
TF Bll4368 Glycolate utilization; Lactate utilization 5 7
TF Blr6977 1 1
TF FixJ Oxygen Oxidative stress response 5 2
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 30 24
TF GulR Glucarate utilization; Galactarate utilization 6 6
TF HrcA Heat shock Heat shock response 6 4
TF HutC cis-Urocanic acid Histidine utilization 3 2
TF Irr Heme Iron homeostasis 21 14
TF LexA DNA damage SOS response 21 12
TF MdcY Malonate metabolism 7 5
TF Mll1683 Sugar utilization 3 3
TF Mll2434 1 1
TF Mur Iron ion, (Fe2+) Manganese homeostasis 3 3
TF NadQ NAD biosynthesis 1 2
TF NifA Nitrogen fixation 33 18
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 2
TF NmlR Diamide Carbonyl stress response 1 1
TF NnrR Nitric oxide Denitrification 15 18
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 11 7
TF PdxQ3 Pyridoxine/pyridoxal homeostasis 1 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnF Phosphonate utilization 4 2
TF PsrA Oleate Fatty acid degradation 2 4
TF SMb20039 1 1
TF UxuR2 Galacturonate utilization 4 6
TF VanR Vanillate Vanillate utilization 1 2
TF XylR Xylose Xylose utilization 2 2
TF XylR Xylose Xylose utilization 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 2
TF blr3394 Sugar utilization 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 5
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 2 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 1
RNA serC Serine biosynthesis 1 1
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