# TF - NadQ: bll2550
>bll2542(nadA) Score=5.9 Pos=-117 [Bradyrhizobium japonicum USDA 110]
ATTTACTCAGATTGAGCATAT
>bll2542(nadA) Score=6.5 Pos=-42 [Bradyrhizobium japonicum USDA 110]
ATATACTCACATTGAGCATAA
# TF - NrdR: bll5032
>bll0007(nrdA) Score=3.3 Pos=-20 [Bradyrhizobium japonicum USDA 110]
TTCGCATATATGGTGG
>bll0007(nrdA) Score=4.5 Pos=-51 [Bradyrhizobium japonicum USDA 110]
CTTCTATATGTGGTGT
>bll4274(nrdJ) Score=5.4 Pos=-492 [Bradyrhizobium japonicum USDA 110]
CCACCATATTTAGTAT
# TF - NikR: bll0699
>bll6949(hoxN) Score=7.8 Pos=13 [Bradyrhizobium japonicum USDA 110]
GTATGAC--------------ATCATAC
>bll6910(hoxN) Score=7.7 Pos=22 [Bradyrhizobium japonicum USDA 110]
GTATGAT--------------ATCATAC
# TF - Zur: blr0934
>bll2461(PF11162) Score=5.3 Pos=-3 [Bradyrhizobium japonicum USDA 110]
GCGATGTTACATTATAACATCGC
>bll7771(znuC) Score=5.9 Pos=-259 [Bradyrhizobium japonicum USDA 110]
GTAATGTTATAATATAACGTCCA
# TF - NnrR: blr7084
>bll6222(PF01152) Score=5 Pos=-91 [Bradyrhizobium japonicum USDA 110]
ATTTGCGCTGCGACAAAG
>bsr7087 Score=5 Pos=-117 [Bradyrhizobium japonicum USDA 110]
CCTTGCGCTCGCGCAAAG
>bsr7087 Score=5.1 Pos=-79 [Bradyrhizobium japonicum USDA 110]
CATTGCGCTCGCGCAAAG
>blr7089(nirK) Score=4.4 Pos=-76 [Bradyrhizobium japonicum USDA 110]
GCTTGTTGCAGCGCAAAC
>bsl3211 Score=4.5 Pos=-20 [Bradyrhizobium japonicum USDA 110]
GTTTGTCGGCGGACAAAC
>bsl3211 Score=5 Pos=17 [Bradyrhizobium japonicum USDA 110]
GTTTGCGCCGACGCAACG
>bll7083(nnrS) Score=5 Pos=-79 [Bradyrhizobium japonicum USDA 110]
GTTTGCGATAGCGCAAAA
>blr3212(norE) Score=5 Pos=-108 [Bradyrhizobium japonicum USDA 110]
CGTTGCGTCGGCGCAAAC
>blr3212(norE) Score=4.5 Pos=-71 [Bradyrhizobium japonicum USDA 110]
GTTTGTCCGCCGACAAAC
>bll7628(nnrX) Score=4.2 Pos=-50 [Bradyrhizobium japonicum USDA 110]
CATTGTTCCCGCTCAAAT
>blr7629(ubiD) Score=4.2 Pos=-15 [Bradyrhizobium japonicum USDA 110]
ATTTGAGCGGGAACAATG
>blr7084(nnrR) Score=5 Pos=-68 [Bradyrhizobium japonicum USDA 110]
TTTTGCGCTATCGCAAAC
>blr0314(nosR) Score=4.5 Pos=-133 [Bradyrhizobium japonicum USDA 110]
GCTTGATCCAGCGCAAAC
>bll7086(hemN) Score=5.1 Pos=-142 [Bradyrhizobium japonicum USDA 110]
CTTTGCGCGAGCGCAATG
>bll7086(hemN) Score=5 Pos=-104 [Bradyrhizobium japonicum USDA 110]
CTTTGCGCGAGCGCAAGG
>bsl7085(PF08984) Score=4.4 Pos=-64 [Bradyrhizobium japonicum USDA 110]
GCTTGCGCTCCAACAAAG
>bll2007(hemN1) Score=4.8 Pos=-74 [Bradyrhizobium japonicum USDA 110]
GTTTGACATAACGCAAAG
>blr3214(norC) Score=4.6 Pos=-89 [Bradyrhizobium japonicum USDA 110]
CATTGCGCCCTGACAAAG
# TF - HutC: blr6245
>blr6244(hutF) Score=5.6 Pos=-53 [Bradyrhizobium japonicum USDA 110]
TATATGTCTAGACATATA
>bll6243(hutI) Score=5.6 Pos=-64 [Bradyrhizobium japonicum USDA 110]
TATATGTCTAGACATATA
# TF - Irr: blr1216, bll0768
>blr3904(fiu) Score=4.9 Pos=-184 [Bradyrhizobium japonicum USDA 110]
GTTTTAGAACGACTCCAATTT
>bll2737(coxS) Score=5.1 Pos=-52 [Bradyrhizobium japonicum USDA 110]
TGATTTGAACAGTTCCAATTT
>bll7968(fhuA3) Score=5.1 Pos=-116 [Bradyrhizobium japonicum USDA 110]
CGCTTAGAACCATTCAACACT
>bsr6522 Score=5 Pos=-79 [Bradyrhizobium japonicum USDA 110]
ACTTTAAAATCACTCTAAGGT
>blr3904(fiu) Score=5.7 Pos=-162 [Bradyrhizobium japonicum USDA 110]
ACTTTAGAACCGTTTGAAACT
>blr3904(fiu) Score=4.9 Pos=-139 [Bradyrhizobium japonicum USDA 110]
AGATTAGAATCGTTTTGATCT
>bll7076(hmuR) Score=4.7 Pos=-167 [Bradyrhizobium japonicum USDA 110]
AATTTACAATCGATATAAACT
>bll6680(bfr) Score=5.7 Pos=-62 [Bradyrhizobium japonicum USDA 110]
CATTTAGAAGCGTTCTAAATT
>blr7895(mbfA) Score=6.7 Pos=-38 [Bradyrhizobium japonicum USDA 110]
AATTTAGAATCATTCTAAACT
>bsl6681(bfd) Score=4.9 Pos=-96 [Bradyrhizobium japonicum USDA 110]
AGTTTGGAATAGCTTCAAATA
>bsl6681(bfd) Score=5.2 Pos=-128 [Bradyrhizobium japonicum USDA 110]
ATTTTAGAGCCGTTCTAGGCT
>blr4504(fhuA1) Score=4.8 Pos=-169 [Bradyrhizobium japonicum USDA 110]
CGTCTAGAAGGATTCCAAATC
>bll5796(fumA) Score=4.6 Pos=-62 [Bradyrhizobium japonicum USDA 110]
AGCTTAGAACGCTTCTATGCC
>blr7077(hmuT) Score=4.7 Pos=-302 [Bradyrhizobium japonicum USDA 110]
AGTTTATATCGATTGTAAATT
# TF - NtrC: blr4488
>blr1448(urtA) Score=4.4 Pos=-111 [Bradyrhizobium japonicum USDA 110]
TGCTCAATAAATGAACT
>blr1448(urtA) Score=4.9 Pos=-67 [Bradyrhizobium japonicum USDA 110]
TGCACAAATCTTGAGCA
>bll4571(nirA) Score=4 Pos=-202 [Bradyrhizobium japonicum USDA 110]
CGTCTAAATTTTGGGCT
>blr2806(narK) Score=3.9 Pos=-292 [Bradyrhizobium japonicum USDA 110]
AGCTCAATCCTTGTGCG
>blr0612(glnK) Score=4.1 Pos=-180 [Bradyrhizobium japonicum USDA 110]
TGCCCTCATTTTGAGCA
>blr1036(dppA) Score=4.5 Pos=-190 [Bradyrhizobium japonicum USDA 110]
CGATGAAATTTTGAGCA
>blr4948(glnB) Score=3.6 Pos=-290 [Bradyrhizobium japonicum USDA 110]
TGCCTATTTCGTAGTCT
# TF - Mur: bll0797
>bll5044(mntH) Score=5.8 Pos=-46 [Bradyrhizobium japonicum USDA 110]
GTTGCAAATGAGTTGCAAT
>blr0095 Score=5.3 Pos=-149 [Bradyrhizobium japonicum USDA 110]
ATTGCGAATTAATCGCAAT
>bll0768(irr1) Score=4.3 Pos=-79 [Bradyrhizobium japonicum USDA 110]
GTTGCGAGAAACTTGCATC
# TF - LexA: blr4826
>blr4826(lexA) Score=5.2 Pos=-88 [Bradyrhizobium japonicum USDA 110]
GTTCATGATTTGTTT
>blr4702(uvrA) Score=4.8 Pos=-112 [Bradyrhizobium japonicum USDA 110]
GTTCTTCCTACGTTC
>blr1535(ruvC) Score=4.6 Pos=-47 [Bradyrhizobium japonicum USDA 110]
GTTCTGTTTCTGTTT
>bll0661(yifB) Score=4.9 Pos=-74 [Bradyrhizobium japonicum USDA 110]
GTTCCCGTATTGTTC
>blr2519(PF04055) Score=5.7 Pos=-38 [Bradyrhizobium japonicum USDA 110]
GTTCTTGATTTGTTC
>blr8110(rmuC) Score=4.8 Pos=-15 [Bradyrhizobium japonicum USDA 110]
GTTCGCTATTCGTTC
>bll5755(recA) Score=0.9 Pos=-90 [Bradyrhizobium japonicum USDA 110]
GAACAAATAGGGTAC
>bll5755(recA) Score=1.6 Pos=-108 [Bradyrhizobium japonicum USDA 110]
GAACATATTGCGAAC
>blr4761(xthA) Score=4.5 Pos=-21 [Bradyrhizobium japonicum USDA 110]
GTTTGCATTTTGTTC
>blr7466(rna) Score=4.9 Pos=-63 [Bradyrhizobium japonicum USDA 110]
GTTCTTGAAATGTTC
>blr3024(imuA) Score=1.8 Pos=-81 [Bradyrhizobium japonicum USDA 110]
GAACATATCATGAAC
>bll4698(ssb) Score=1.2 Pos=-169 [Bradyrhizobium japonicum USDA 110]
GAACAAATCTGGAAC
# TF - NifA: blr2037
>blr2143(cpx1) Score=4.3 Pos=-129 [Bradyrhizobium japonicum USDA 110]
TGTCGGCATTGAGACT
>blr2143(cpx1) Score=4.2 Pos=-110 [Bradyrhizobium japonicum USDA 110]
TGCCAGAAACCTGACA
>blr2144(cpxP) Score=4 Pos=-265 [Bradyrhizobium japonicum USDA 110]
TATGGCGATGCCGACA
>blr2037(nifA) Score=3.8 Pos=-39 [Bradyrhizobium japonicum USDA 110]
TGTCATCTCGTCAACA
>blr2036(fixR) Score=3.9 Pos=-126 [Bradyrhizobium japonicum USDA 110]
TGTCTTGAATGCGCCA
>blr2036(fixR) Score=3.8 Pos=-106 [Bradyrhizobium japonicum USDA 110]
TTCCGCGTGCGCGACA
>bll2060(groES3) Score=3.9 Pos=-194 [Bradyrhizobium japonicum USDA 110]
TGTCATTTTCACGACA
>blr1719(modB) Score=4 Pos=-369 [Bradyrhizobium japonicum USDA 110]
TGTCCGCTTGGAAACA
>blr1719(modB) Score=4.2 Pos=-349 [Bradyrhizobium japonicum USDA 110]
TGCCAGAAACCTGACA
>blr6951(modA) Score=4.5 Pos=-215 [Bradyrhizobium japonicum USDA 110]
TGTCAGCTTGCCGACC
>blr6951(modA) Score=5.6 Pos=-195 [Bradyrhizobium japonicum USDA 110]
TGTCGGAAATCCGACA
>blr1720(hupS) Score=3.8 Pos=-186 [Bradyrhizobium japonicum USDA 110]
CGTCGAAAACTGGACA
>blr1720(hupS) Score=3.8 Pos=-34 [Bradyrhizobium japonicum USDA 110]
CGTAACGCTGGCGACA
>blr1743(nifD) Score=5.1 Pos=-155 [Bradyrhizobium japonicum USDA 110]
TGTCGGATTCGCAACA
>blr1771(nifW) Score=4.3 Pos=-495 [Bradyrhizobium japonicum USDA 110]
TGTCGCATTTGCCACG
>blr1883(rpoN) Score=4.2 Pos=-376 [Bradyrhizobium japonicum USDA 110]
TGTCTGAGTGGCGGCA
>blr1755(iscN) Score=5.2 Pos=-116 [Bradyrhizobium japonicum USDA 110]
TGTCAGGAACCCGACA
>bll1075(fdxN) Score=3.6 Pos=-257 [Bradyrhizobium japonicum USDA 110]
TTTCGAGCTCGCTACA
# TF - PsrA: blr5456
>blr5456(psrA) Score=5.7 Pos=-169 [Bradyrhizobium japonicum USDA 110]
CTTCAAACGATAGTTTCATA
>blr5456(psrA) Score=6 Pos=-156 [Bradyrhizobium japonicum USDA 110]
TTTCATACAACTGTTTGAAT
>bll5455(acdH) Score=6 Pos=-189 [Bradyrhizobium japonicum USDA 110]
ATTCAAACAGTTGTATGAAA
>bll5455(acdH) Score=5.7 Pos=-176 [Bradyrhizobium japonicum USDA 110]
TATGAAACTATCGTTTGAAG
# TF - XylR: bll2268
>bll2268(xylR) Score=5 Pos=-190 [Bradyrhizobium japonicum USDA 110]
TTTTATTCACACAGCGAAGAAAT
>blr2269(xylF2) Score=5 Pos=-54 [Bradyrhizobium japonicum USDA 110]
ATTTCTTCGCTGTGTGAATAAAA
# TF - VanR: blr2391
>blr2390(vanA) Score=4.1 Pos=-99 [Bradyrhizobium japonicum USDA 110]
TGTATACT
>blr2390(vanA) Score=4.9 Pos=-25 [Bradyrhizobium japonicum USDA 110]
TGTATACA
# TF - PhnF: bll1220
>blr1221(phnG) Score=6 Pos=6 [Bradyrhizobium japonicum USDA 110]
TTGTCTACTATCATAGACAA
>bll1220(phnF) Score=6 Pos=-88 [Bradyrhizobium japonicum USDA 110]
TTGTCTATGATAGTAGACAA
# RNA - Cobalamin
>blr3262(cfrX) Score=91.8 Pos=-314 [Bradyrhizobium japonicum USDA 110]
AATGGTGGCCCGGCGTTGGTTCCTGTCCTATGACAGGCGAAGAGGGAATGCGATAGGGTCCGAATCGGCAAGATTTGGGTCCAAAATGCAGCCGCCCCCGCGACCGTGACCGGAGAGATGCCCGAGGCCACTGATCCCTGACGGGATCGGGAAGGCGGGGATCGAAGGGCAAAACCCTGCTCCGCAAGCCGGGAGACCTGCCAGCGCGGACGATTTTGGACC
>blr2068((EC 2.1.1.14)) Score=108.3 Pos=-302 [Bradyrhizobium japonicum USDA 110]
ATAATCCAAGTCGTCGAGGTTCTCCGGTTCCCATTGATCCGGAGCTAAGAGGGAAGCCGGTGCAAATGCCGGCTCTGCCCCCGCAACTGTGAGCGGCGAGCCGCTGTCCGACGATGTCGCTGAAGCCTGCACGGCTTCGGGAAGGCCGGACAGCAGCGATGACCAGCAAGCCAGGAGACCGGCCCCGACAATATATTGGTCCAC
>blr3278(btuB2) Score=142.5 Pos=-284 [Bradyrhizobium japonicum USDA 110]
TCCTAGATGCTCGCGACGGTTTCCCCCGAGAGGGGATGAAAAGGGAATGCGGTGCGGGGATGTTTCCCCAATGCCGCGGCTGCCCCCGCAACTGTAAGCGGATAATCCTTCGTCAGAAGCCACTGGGTCCTCGGTCCCGGGAAGGCGACGAAGTGGTGACGACCCGCGAGCCAGGAGACCTGCCGTCAGCCGTGGTCACACGCG
>blr3274(cbtC) Score=99.5 Pos=-256 [Bradyrhizobium japonicum USDA 110]
GCACACAGGACGGGCATGGTGCTCGAGGTGGCGCAAAGCGCCGGAGCATAATCGGGAATGGGGATGGGCGGACCCAGTTGCGGCGCCCAAAACCCCAGCCGCCCCCGCGACTGTAAGCGGTGAGGGGCTCCGAACCGCCACTGGGCCGCAAGGTCCGGGAAGGCCGGAGAACCCCAGTGAACCGCGAGCCAGGAGACCGGCCGTGCATGTTTTGAGGCCAAG
>bll4766(btuB) Score=143.6 Pos=-329 [Bradyrhizobium japonicum USDA 110]
TCGTAGATTGATCGGTGACGGTTCTCCGCACGGAGATCAAAAGGGAACGTGGTGCGAGATTGTCCCAATGCCGGGATTGTCCCAACGCCACGGCTGCCCCCGCAACTGTAAGCGGTGAATCTTTCGTCATATGCCACTGGGAATCTCGGTCCTGGGAAGGCGACGTAAGGTAACGACCCGCGAGCCAGGAGACCTGCCGTCAGCCGTGGTCACACG
# RNA - FMN
>bll7452(ribH2) Score=108.6 Pos=-252 [Bradyrhizobium japonicum USDA 110]
GATAAGTTCTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTAAGGGCCGAAAGGCCTAAGCCCGCGAGCGCCTTCTCCTTGATAGGGATTCCCTCGGGGACCCCTCGGAGGGAAGGGTCAGCAGATTCGGTGCAACTCCGAAGCCGACGGTTAAAGTCCGGATGAAAGAGAACGGTC
# RNA - TPP
>blr6655(thiO) Score=70 Pos=-115 [Bradyrhizobium japonicum USDA 110]
ACCGTTCCGAGGGGTGCTCCGAGGAGGAGCTGAGATACCGCTAAATGGGCAAATCCGCCCAGGACCGCGGTGACCCTTTGAACCTGATCCGGGTCATGCCGGCGAAGGGACAGGGATGTTACAGACGAT
# RNA - serC
>bll7402(serC) Score=65.5 Pos=-52 [Bradyrhizobium japonicum USDA 110]
GCGGCGGGACACCTCCCCCCAACGGGAGGCTTACTATCTGGAAGGGTAGAATAT
# RNA - Glycine
>blr5751(gcvT) Score=55.5 Pos=-233 [Bradyrhizobium japonicum USDA 110]
ACGGCCACGTCGGGAGAGACCGGCTTTAGGCAGCCGGCGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCAAAAGGACCGCGTGGCTTT
>blr5751(gcvT) Score=38.3 Pos=-143 [Bradyrhizobium japonicum USDA 110]
TGACAGCATCTGGAAAGAGGCGCCGACGAGCTTGAGGCTCGGACAGCGTCCGCCGACGGGATAATACTCTCAGGCACAGCGACAGATGGGGCTTCGA
# RNA - SAM_alpha
>blr1399(metX) Score=79.7 Pos=-170 [Bradyrhizobium japonicum USDA 110]
GCCTGTTCCGTGGTCATTTGAGCCGGCCGGCTTGCAGCCACGTTAAAAAACTCGCTAAACAGGCCGGGGACGCTTCCGATC
>bll1105(metY) Score=84.7 Pos=-90 [Bradyrhizobium japonicum USDA 110]
TCACTTATCCCGTGGTGATTTGAGCCGGCCGGCTTGCAGCCACGTTAAATAAGTCGCTAAACAGGCCGGGGACCTCTGTGA
# TF - HrcA: blr0675
>bsr7532(groS) Score=6.5 Pos=-119 [Bradyrhizobium japonicum USDA 110]
TTAGCACTCGGAAAGCCCGATTGCTAA
>blr5625(groS) Score=6.4 Pos=-70 [Bradyrhizobium japonicum USDA 110]
CTAGCACTCGCGGGCACAGACTGCTAA
>blr6978(groS) Score=5.5 Pos=-59 [Bradyrhizobium japonicum USDA 110]
TCAGCACTCGCTAGCTTCGACTGCTAT
>blr5226(groS) Score=5.4 Pos=-137 [Bradyrhizobium japonicum USDA 110]
TTGGCAGTCAGACGGCCGGAGTGACAA
# TF - NmlR: bll4578
>bll4578(nmlR) Score=6 Pos=-56 [Bradyrhizobium japonicum USDA 110]
CTTAGAGTGCGCTCGAAG
# TF - BioR: bll2094
>bll2094(bioR) Score=4.3 Pos=-97 [Bradyrhizobium japonicum USDA 110]
TTGTAGATAA
>bll2094(bioR) Score=4.4 Pos=-78 [Bradyrhizobium japonicum USDA 110]
TTATCTATAG
>blr2095(bioB) Score=4.4 Pos=-46 [Bradyrhizobium japonicum USDA 110]
CTATAGATAA
>blr2095(bioB) Score=4.3 Pos=-27 [Bradyrhizobium japonicum USDA 110]
TTATCTACAA
# TF - XylR: blr1118
>blr1118(xylR) Score=5.7 Pos=-42 [Bradyrhizobium japonicum USDA 110]
AATGAGTTGCGTACCTCAAA
# TF - Atu5239: bll3974
>bll3981(dsd) Score=6.2 Pos=-67 [Bradyrhizobium japonicum USDA 110]
TAATGACAACGTTGTCATTC
# TF - Mll1683: bll3916
>bll3915(COG0129) Score=5.6 Pos=-153 [Bradyrhizobium japonicum USDA 110]
AAATGGTAGCGTTACCAAGT
>blr3917(blr3917) Score=4.8 Pos=-162 [Bradyrhizobium japonicum USDA 110]
CGTTGACAGCGCTACCAGCA
>bll3916(mll1683) Score=4.8 Pos=-37 [Bradyrhizobium japonicum USDA 110]
TGCTGGTAGCGCTGTCAACG
# TF - blr3394: blr3394
>blr3389(blr3389) Score=6.9 Pos=-69 [Bradyrhizobium japonicum USDA 110]
TTTTAGTTGCGCACCTCAAA
# TF - SMb20039: blr0404
>bll0403(COG697) Score=12.7 Pos=-109 [Bradyrhizobium japonicum USDA 110]
AGGTGTACTGC-(8)-CCCATACAGTT-(6)-GATTGTACTGG
# TF - PdxQ3: blr5860
>bll5859(COG5457) Score=10.8 Pos=-107 [Bradyrhizobium japonicum USDA 110]
ATTGCACC-(1)-AGAGCAAT-(6)-CTTGCTCC
# TF - Blr6977: blr6977
>bll6976(COG1917) Score=9.9 Pos=-29 [Bradyrhizobium japonicum USDA 110]
CCTTGGTACA--------------TCTTGGTGCT
# TF - Bll4368: bll4368, blr6040
>bll6039(sgaA) Score=5 Pos=-7 [Bradyrhizobium japonicum USDA 110]
AAAATGAATGCAAAAT
>blr6040(Bll4368) Score=5 Pos=-82 [Bradyrhizobium japonicum USDA 110]
ATTTTGCATTCATTTT
>blr6041(dld2) Score=5.2 Pos=-86 [Bradyrhizobium japonicum USDA 110]
ATTTTGAATTCATAAT
>bll4368(Bll4368) Score=4.8 Pos=-7 [Bradyrhizobium japonicum USDA 110]
TTTTTGAATGCAGAAT
>bll4368(Bll4368) Score=5.1 Pos=55 [Bradyrhizobium japonicum USDA 110]
TTTTTGCATTCAAATT
>blr4369 Score=5.1 Pos=-104 [Bradyrhizobium japonicum USDA 110]
AATTTGAATGCAAAAA
>blr4369 Score=4.8 Pos=-42 [Bradyrhizobium japonicum USDA 110]
ATTCTGCATTCAAAAA
# TF - PdxW: bll4154
>blr4155(pdxO) Score=12.5 Pos=-97 [Bradyrhizobium japonicum USDA 110]
AATTGGTC-(16)-AATTGGCA-(8)-GACCAAAT
# TF - Mll2434: blr2901
>bll2900(PF00892) Score=12.6 Pos=-92 [Bradyrhizobium japonicum USDA 110]
AACTGGCACC-(13)-ATCTGGCACT-(6)-GGTGCCAGCC
# TF - UxuR2: bll6835, bll3929
>blr6836(uxuB) Score=5.7 Pos=-47 [Bradyrhizobium japonicum USDA 110]
TAATTGGCCTTACCAATTG
>bll6835(uxuR2) Score=5.7 Pos=10 [Bradyrhizobium japonicum USDA 110]
CAATTGGTAAGGCCAATTA
>blr3930 Score=5.5 Pos=-73 [Bradyrhizobium japonicum USDA 110]
AAGCTGGTCAGACCAATTT
>blr3930 Score=5 Pos=-59 [Bradyrhizobium japonicum USDA 110]
AATTTGGACTGACCAGTTT
>bll3929(uxuR2-3) Score=5.5 Pos=-60 [Bradyrhizobium japonicum USDA 110]
AAATTGGTCTGACCAGCTT
>bll3929(uxuR2-3) Score=5 Pos=-74 [Bradyrhizobium japonicum USDA 110]
AAACTGGTCAGTCCAAATT
# TF - MdcY: blr1279
>blr1277(mdcL) Score=4 Pos=-121 [Bradyrhizobium japonicum USDA 110]
GTGTATACGC
>blr1277(mdcL) Score=3.6 Pos=-161 [Bradyrhizobium japonicum USDA 110]
TTGTATCTAA
>bll1276(mdcA) Score=4 Pos=-82 [Bradyrhizobium japonicum USDA 110]
GCGTATACAC
>bll1276(mdcA) Score=3.6 Pos=-42 [Bradyrhizobium japonicum USDA 110]
TTAGATACAA
>bll0269(mdcC) Score=3.6 Pos=-46 [Bradyrhizobium japonicum USDA 110]
TTGTACGCAC
# TF - FnrN/FixK/AadR: bll2757, bll7696, bll2109, bll3466, bll6061
>blr7089(nirK) Score=4 Pos=-77 [Bradyrhizobium japonicum USDA 110]
AGCTTGTTGCAGCGCAAACA
>bsr3073(bsr3073) Score=4.5 Pos=-41 [Bradyrhizobium japonicum USDA 110]
GATTTGTCCGGGATCAATGA
>bsr3073(bsr3073) Score=5.2 Pos=-104 [Bradyrhizobium japonicum USDA 110]
TCATTGACGCGGATCAATTG
>blr2763(ccoN) Score=4.8 Pos=-73 [Bradyrhizobium japonicum USDA 110]
ATCTTGATTTCAATCAATTC
>bll6073(phbC) Score=5.2 Pos=-149 [Bradyrhizobium japonicum USDA 110]
GGTTTGACTCAGGTCAAGCG
>bll6073(phbC) Score=4.7 Pos=-84 [Bradyrhizobium japonicum USDA 110]
GATTTGATGCAGCTCAACAC
>bll3998(attK) Score=4.8 Pos=-123 [Bradyrhizobium japonicum USDA 110]
CGATTGACCTGTCTCAAAGT
>bll1200(hemA) Score=5.4 Pos=-150 [Bradyrhizobium japonicum USDA 110]
TCTTTGATCGGGATCAAGTT
>blr7961(hspC2) Score=4.8 Pos=-85 [Bradyrhizobium japonicum USDA 110]
AATTTGAGACAAATCAAGGA
>blr4655(ppsA) Score=4.9 Pos=-50 [Bradyrhizobium japonicum USDA 110]
AGGTTGACCTGCCTCAAGGC
>blr2767(ccoG) Score=5.3 Pos=-74 [Bradyrhizobium japonicum USDA 110]
CGTTTGAGCTGGATCAACGG
>blr4637(hspC2) Score=4.9 Pos=-89 [Bradyrhizobium japonicum USDA 110]
GGCTTGAGCAAAATCAAATT
>bll7086(hemN) Score=3.8 Pos=-105 [Bradyrhizobium japonicum USDA 110]
ACTTTGCGCGAGCGCAAGGT
>bll2758(bll2758) Score=5 Pos=-50 [Bradyrhizobium japonicum USDA 110]
CGATTGAGCCAAGTCAAGGC
>bll2758(bll2758) Score=4 Pos=-3 [Bradyrhizobium japonicum USDA 110]
AGCATGATCGAGGTCAGTTC
>blr3521 Score=4.6 Pos=-76 [Bradyrhizobium japonicum USDA 110]
GCCTTGATTTGGCTCATACG
>bll1766(ompW) Score=4.8 Pos=-231 [Bradyrhizobium japonicum USDA 110]
TATTTGATTGGTATCAAATC
>blr1311(ompW) Score=5 Pos=-63 [Bradyrhizobium japonicum USDA 110]
GATTTGATCGGCGTCAAATC
>bll5655(adhA) Score=4.9 Pos=-72 [Bradyrhizobium japonicum USDA 110]
GGTTTGACTCCAATCAAGGG
>bsr7036(napE) Score=5.5 Pos=-104 [Bradyrhizobium japonicum USDA 110]
GGATTGATCCAGATCAACGC
>blr0314(nosR) Score=4.9 Pos=-134 [Bradyrhizobium japonicum USDA 110]
AGCTTGATCCAGCGCAAACA
>bll6061(aadR) Score=5.3 Pos=-103 [Bradyrhizobium japonicum USDA 110]
GAATTGATCTGGGTCAACCG
>blr6062(blr6062) Score=5.3 Pos=-75 [Bradyrhizobium japonicum USDA 110]
CGGTTGACCCAGATCAATTC
>blr6070(adhP) Score=4.7 Pos=-81 [Bradyrhizobium japonicum USDA 110]
GCATTGAGGGAGGTCAAGGA
# TF - GulR: blr5870
>bll6551(uxuP2) Score=5.7 Pos=-130 [Bradyrhizobium japonicum USDA 110]
ATCCATACCTGAATTGGATCGAT
>bll6551(uxuP2) Score=4.8 Pos=-151 [Bradyrhizobium japonicum USDA 110]
ATCAATCTGCGTTCGGCATTGAT
>blr5869(gudP) Score=6.1 Pos=-107 [Bradyrhizobium japonicum USDA 110]
ATCAATCCAAAAACGGCATCGAT
>blr5870(gulR) Score=5 Pos=-21 [Bradyrhizobium japonicum USDA 110]
ATTCATCTAAGGCATGTATCGAT
>blr5871(kdgD) Score=5.4 Pos=-128 [Bradyrhizobium japonicum USDA 110]
ATTGATGCTGATTTCGCATCGGT
>blr0368(uxuF) Score=5.8 Pos=-42 [Bradyrhizobium japonicum USDA 110]
ACCGATACCATTTCGGCATCGAT
# TF - FixJ: bll2760
>bll2757(fixK) Score=5.1 Pos=-93 [Bradyrhizobium japonicum USDA 110]
CTACGGGGTTCTACGTAA
>bll2757(fixK) Score=4.2 Pos=-79 [Bradyrhizobium japonicum USDA 110]
GTAAGGCACCCCCCTTAA
# TF - Bll2166: bll2166
>blr2167(blr2167) Score=5.6 Pos=-102 [Bradyrhizobium japonicum USDA 110]
AGTGAACCAGATTCATC
>bll2166(bll2166) Score=5.6 Pos=-23 [Bradyrhizobium japonicum USDA 110]
GATGAATCTGGTTCACT
>blr2167(blr2167) Score=4.8 Pos=-199 [Bradyrhizobium japonicum USDA 110]
GGTGAAGCTCATTCGCC