Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FnrN/FixK/AadR in Bradyrhizobium japonicum USDA 110

Properties
Regulator type: Transcription factor
TF locus tag: bll2757, bll7696, bll2109, bll3466, bll6061
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FnrN/FixK/AadR - Rhizobiales
Statistics of regulated genes:
- Genes 33
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -73
Score: 4.8
Sequence: ATCTTGATTTCAATCAATTC
Locus tag: blr2763
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: blr2764
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: bsr2765
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: blr2766
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
blr2763
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
blr2764
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
bsr2765
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
blr2766
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Position: -85
Score: 4.8
Sequence: AATTTGAGACAAATCAAGGA
Locus tag: blr7961
Name: hspC2
Funciton: Small heat shock protein
blr7961
hspC2
Small heat shock protein
Position: -89
Score: 4.9
Sequence: GGCTTGAGCAAAATCAAATT
Locus tag: blr4637
Name: hspC2
Funciton: Small heat shock protein
blr4637
hspC2
Small heat shock protein
Position: -123
Score: 4.8
Sequence: CGATTGACCTGTCTCAAAGT
Locus tag: bll3998
Name: attK
Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
bll3998
attK
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Position: -74
Score: 5.3
Sequence: CGTTTGAGCTGGATCAACGG
Locus tag: blr2767
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: blr2768
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: blr2769
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: bsr2770
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
blr2767
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
blr2768
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
blr2769
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
bsr2770
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -81
Score: 4.7
Sequence: GCATTGAGGGAGGTCAAGGA
Locus tag: blr6070
Name: adhP
Funciton: Predicted alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Locus tag: blr6071
Name: COG2187
Funciton: Predicted kinase
blr6070
adhP
Predicted alcohol dehydrogenase (EC 1.1.1.1), zinc containing
blr6071
COG2187
Predicted kinase
Position: -75
Score: 5.3
Sequence: CGGTTGACCCAGATCAATTC
Locus tag: blr6062
Name: blr6062
Funciton: Putative cytochrome C6 precursor
blr6062
blr6062
Putative cytochrome C6 precursor
Position: -103
Score: 5.3
Sequence: GAATTGATCTGGGTCAACCG
Locus tag: bll6061
Name: aadR
Funciton: Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
bll6061
aadR
Nitrogen fixation and oxygen response transcriptional regulator AadR, Crp family
Position: -104
Score: 5.5
Sequence: GGATTGATCCAGATCAACGC
Locus tag: bsr7036
Name: napE
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: blr7037
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: blr7038
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: blr7039
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: blr7040
Name: napC
Funciton: Cytochrome c-type protein NapC
bsr7036
napE
Periplasmic nitrate reductase component NapE
blr7037
napD
Periplasmic nitrate reductase component NapD
blr7038
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
blr7039
napB
Nitrate reductase cytochrome c550-type subunit
blr7040
napC
Cytochrome c-type protein NapC
Position: -72
Score: 4.9
Sequence: GGTTTGACTCCAATCAAGGG
Locus tag: bll5655
Name: adhA
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
bll5655
adhA
Alcohol dehydrogenase (EC 1.1.1.1), zinc containing
Position: -63
Score: 5
Sequence: GATTTGATCGGCGTCAAATC
Locus tag: blr1311
Name: ompW
Funciton: Outer membrane protein W precursor
blr1311
ompW
Outer membrane protein W precursor
Position: -231
Score: 4.8
Sequence: TATTTGATTGGTATCAAATC
Locus tag: bll1766
Name: ompW
Funciton: Outer membrane protein W precursor
bll1766
ompW
Outer membrane protein W precursor
Position: -50
Score: 4.9
Sequence: AGGTTGACCTGCCTCAAGGC
Locus tag: blr4655
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
blr4655
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -134
Score: 4.9
Sequence: AGCTTGATCCAGCGCAAACA
Locus tag: blr0314
Name: nosR
Funciton: Nitrous oxide reductase maturation protein NosR
blr0314
nosR
Nitrous oxide reductase maturation protein NosR
Position: -76
Score: 4.6
Sequence: GCCTTGATTTGGCTCATACG
Locus tag: blr3521
Name: null
Funciton: Lipocalin-related protein and Bos/Can/Equ allergen
blr3521
Lipocalin-related protein and Bos/Can/Equ allergen
Position: -50
Score: 5
Sequence: CGATTGAGCCAAGTCAAGGC
Position: -3
Score: 4
Sequence: AGCATGATCGAGGTCAGTTC
Locus tag: bll2758
Name: bll2758
Funciton: Predicted transcriptional regulator, two-component, OmpR family
bll2758
bll2758
Predicted transcriptional regulator, two-component, OmpR family
Position: -149
Score: 5.2
Sequence: GGTTTGACTCAGGTCAAGCG
Position: -84
Score: 4.7
Sequence: GATTTGATGCAGCTCAACAC
Locus tag: bll6073
Name: phbC
Funciton: Polyhydroxyalkanoic acid synthase
bll6073
phbC
Polyhydroxyalkanoic acid synthase
Position: -77
Score: 4
Sequence: AGCTTGTTGCAGCGCAAACA
Locus tag: blr7089
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: blr7090
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
blr7089
nirK
Copper-containing nitrite reductase (EC 1.7.2.1)
blr7090
nirV
Nitrite reductase accessory protein NirV
Position: -150
Score: 5.4
Sequence: TCTTTGATCGGGATCAAGTT
Locus tag: bll1200
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
bll1200
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -105
Score: 3.8
Sequence: ACTTTGCGCGAGCGCAAGGT
Locus tag: bll7086
Name: hemN
Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
bll7086
hemN
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
Position: -104
Score: 5.2
Sequence: TCATTGACGCGGATCAATTG
Position: -41
Score: 4.5
Sequence: GATTTGTCCGGGATCAATGA
Locus tag: bsr3073
Name: bsr3073
Funciton: Conserved hypothetical protein
bsr3073
bsr3073
Conserved hypothetical protein
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