Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Bradyrhizobium japonicum USDA 110

Properties
Regulator type: Transcription factor
TF locus tag: blr4826
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 15
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -88
Score: 5.2
Sequence: GTTCATGATTTGTTT
Locus tag: blr4826
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
blr4826
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -112
Score: 4.8
Sequence: GTTCTTCCTACGTTC
Locus tag: blr4702
Name: uvrA
Funciton: Excinuclease ABC subunit A
blr4702
uvrA
Excinuclease ABC subunit A
Position: -38
Score: 5.7
Sequence: GTTCTTGATTTGTTC
Locus tag: blr2519
Name: PF04055
Funciton: Radical SAM domain protein
blr2519
PF04055
Radical SAM domain protein
Position: -108
Score: 1.6
Sequence: GAACATATTGCGAAC
Position: -90
Score: 0.9
Sequence: GAACAAATAGGGTAC
Locus tag: bll5755
Name: recA
Funciton: Recombinase A
bll5755
recA
Recombinase A
Position: -21
Score: 4.5
Sequence: GTTTGCATTTTGTTC
Locus tag: blr4761
Name: xthA
Funciton: Exodeoxyribonuclease III (EC 3.1.11.2)
blr4761
xthA
Exodeoxyribonuclease III (EC 3.1.11.2)
Position: -63
Score: 4.9
Sequence: GTTCTTGAAATGTTC
Locus tag: blr7466
Name: rna
Funciton: Ribonuclease T2
blr7466
rna
Ribonuclease T2
Position: -81
Score: 1.8
Sequence: GAACATATCATGAAC
Locus tag: blr3024
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: blr3025
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: blr3026
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
blr3024
imuA
Predicted RecA/RadA recombinase
blr3025
imuB
DNA polymerase-like protein PA0670
blr3026
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -47
Score: 4.6
Sequence: GTTCTGTTTCTGTTT
Locus tag: blr1535
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: blr1536
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: blr1537
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
blr1535
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
blr1536
ruvA
Holliday junction DNA helicase RuvA
blr1537
ruvB
Holliday junction DNA helicase RuvB
Position: -74
Score: 4.9
Sequence: GTTCCCGTATTGTTC
Locus tag: bll0661
Name: yifB
Funciton: Conserved hypothetical protein
bll0661
yifB
Conserved hypothetical protein
Position: -15
Score: 4.8
Sequence: GTTCGCTATTCGTTC
Locus tag: blr8110
Name: rmuC
Funciton: DNA recombination protein RmuC
blr8110
rmuC
DNA recombination protein RmuC
Position: -169
Score: 1.2
Sequence: GAACAAATCTGGAAC
Locus tag: bll4698
Name: ssb
Funciton: Single-stranded DNA-binding protein
bll4698
ssb
Single-stranded DNA-binding protein
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