Regulons of Xanthobacter autotrophicus Py2
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
Bll2166 |
|
|
2 |
2 |
| TF |
CadR-PbrR |
Lead ion, (Pb2+); Cadmium, ion (Cd2+) |
Lead resistance; Cadmium resistance |
2 |
2 |
| TF |
FixJ |
Oxygen |
Oxidative stress response |
2 |
2 |
| TF |
FnrN/FixK/AadR |
Oxygen |
Oxidative stress response; Nitrogen fixation |
15 |
5 |
| TF |
GntR |
Gluconate |
Gluconate utilization |
3 |
4 |
| TF |
HrcA |
Heat shock |
Heat shock response |
2 |
2 |
| TF |
IdnR |
L-idonate |
Idonate utilization |
2 |
2 |
| TF |
Irr |
Heme |
Iron homeostasis |
18 |
11 |
| TF |
LexA |
DNA damage |
SOS response |
21 |
13 |
| TF |
LldR |
L-lactate |
Lactate utilization |
2 |
2 |
| TF |
MdcY |
|
Malonate metabolism |
2 |
2 |
| TF |
ModE |
Molybdate |
Molybdenum homeostasis |
1 |
1 |
| TF |
Mur |
Iron ion, (Fe2+) |
Manganese homeostasis |
1 |
2 |
| TF |
NadQ |
|
NAD biosynthesis |
1 |
2 |
| TF |
NifA |
|
Nitrogen fixation |
17 |
16 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
1 |
1 |
| TF |
NsrR |
Nitric oxide |
Nitrosative stress response |
2 |
2 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
9 |
10 |
| TF |
PaaR |
Phenylacetyl-CoA |
Phenylacetic acid degradation |
4 |
6 |
| TF |
PckR |
|
Central carbohydrate metabolism |
15 |
5 |
| TF |
PhnF |
|
Phosphonate utilization |
5 |
2 |
| TF |
SMb20667 |
|
Sugar utilization |
2 |
6 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
3 |
2 |
| TF |
SoxR |
Paraquat |
Superoxide stress response |
3 |
2 |
| TF |
YrdX2 |
|
|
3 |
3 |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
6 |
3 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
1 |
2 |
| RNA |
SAM_alpha |
S-adenosylmethionine |
Methionine biosynthesis |
2 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
2 |
| RNA |
mini-ykkC |
|
Multidrug resistance |
2 |
1 |
| RNA |
serC |
|
Serine biosynthesis |
1 |
1 |
| RNA |
speF |
|
Ornithine degradation |
1 |
1 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
2 |
1 |
| RNA |
yybP-ykoY |
|
|
1 |
1 |
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