Regulons of Xanthobacter autotrophicus Py2

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	Bll2166			2	2
TF	CadR-PbrR	Lead ion, (Pb2+); Cadmium, ion (Cd2+)	Lead resistance; Cadmium resistance	2	2
TF	FixJ	Oxygen	Oxidative stress response	2	2
TF	FnrN/FixK/AadR	Oxygen	Oxidative stress response; Nitrogen fixation	15	5
TF	GntR	Gluconate	Gluconate utilization	3	4
TF	HrcA	Heat shock	Heat shock response	2	2
TF	IdnR	L-idonate	Idonate utilization	2	2
TF	Irr	Heme	Iron homeostasis	18	11
TF	LexA	DNA damage	SOS response	21	13
TF	LldR	L-lactate	Lactate utilization	2	2
TF	MdcY		Malonate metabolism	2	2
TF	ModE	Molybdate	Molybdenum homeostasis	1	1
TF	Mur	Iron ion, (Fe2+)	Manganese homeostasis	1	2
TF	NadQ		NAD biosynthesis	1	2
TF	NifA		Nitrogen fixation	17	16
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	1	1
TF	NsrR	Nitric oxide	Nitrosative stress response	2	2
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	9	10
TF	PaaR	Phenylacetyl-CoA	Phenylacetic acid degradation	4	6
TF	PckR		Central carbohydrate metabolism	15	5
TF	PhnF		Phosphonate utilization	5	2
TF	SMb20667		Sugar utilization	2	6
TF	SahR	S-adenosylhomocysteine	Methionine metabolism	3	2
TF	SoxR	Paraquat	Superoxide stress response	3	2
TF	YrdX2			3	3
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	6	3
RNA	Glycine	Glycine	Glycine metabolism	1	2
RNA	SAM_alpha	S-adenosylmethionine	Methionine biosynthesis	2	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	3	2
RNA	mini-ykkC		Multidrug resistance	2	1
RNA	serC		Serine biosynthesis	1	1
RNA	speF		Ornithine degradation	1	1
RNA	ykkC-yxkD		Multidrug resistance	2	1
RNA	yybP-ykoY			1	1

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --