# TF - NsrR: Xaut_5030
>Xaut_5029(PF01152) Score=6 Pos=-32 [Xanthobacter autotrophicus Py2]
TAGATATTTGGAATACCTA
>Xaut_5030(nsrR) Score=6 Pos=-68 [Xanthobacter autotrophicus Py2]
TAGGTATTCCAAATATCTA
# TF - NadQ: Xaut_1184
>Xaut_1183(nadA) Score=5.9 Pos=-52 [Xanthobacter autotrophicus Py2]
TTATGCTCAGTATAAGCATAT
>Xaut_1183(nadA) Score=5.9 Pos=-24 [Xanthobacter autotrophicus Py2]
ATATGCTCAAACTGAGTATAG
# TF - NrdR: Xaut_4277
>Xaut_4674(nrdJ) Score=5.3 Pos=-273 [Xanthobacter autotrophicus Py2]
CCACCATATGTAGTAT
# TF - SahR: Xaut_2830
>Xaut_0186(ahcY) Score=6.1 Pos=-107 [Xanthobacter autotrophicus Py2]
ATATAAGCATTTCTTTATAT
>Xaut_2830(sahR) Score=7.1 Pos=14 [Xanthobacter autotrophicus Py2]
ATATAAAGATATCTTTATGT
# TF - LldR: Xaut_4351
>Xaut_4350(lldP) Score=5.1 Pos=-206 [Xanthobacter autotrophicus Py2]
ATGGTCAAAGTATTTTACCGA
>Xaut_4351(lldR) Score=5.6 Pos=-129 [Xanthobacter autotrophicus Py2]
TCGGTAAAATACTTTGACCAT
# TF - Irr: Xaut_3845
>Xaut_4550(hmuP) Score=4.5 Pos=-19 [Xanthobacter autotrophicus Py2]
GATCTGGAGCGATTCAAAAAT
>Xaut_4470(sufS2) Score=6 Pos=-158 [Xanthobacter autotrophicus Py2]
GATTTAGAATAATTCTAATCT
>Xaut_4550(hmuP) Score=5.7 Pos=-78 [Xanthobacter autotrophicus Py2]
AGTATTGAATACTTCTAAACT
>Xaut_3198(ftr1) Score=5.5 Pos=-238 [Xanthobacter autotrophicus Py2]
TGATTTGAACAATTCAAAACA
>Xaut_3764(fbpA) Score=4.5 Pos=-149 [Xanthobacter autotrophicus Py2]
TAATTGGAACGATTTCAAAGA
>Xaut_1186(PF00033) Score=5.2 Pos=-8 [Xanthobacter autotrophicus Py2]
TTTTTAGAATGAATCAAAATA
>Xaut_4191(hmuR) Score=4.6 Pos=-221 [Xanthobacter autotrophicus Py2]
AGTTTTGATTTTTTCAAAGTT
>Xaut_3766(bfd) Score=4.7 Pos=-34 [Xanthobacter autotrophicus Py2]
TTTTTAGAAGCTTTCCAATTT
>Xaut_2011(mbfA) Score=5.3 Pos=-34 [Xanthobacter autotrophicus Py2]
ATATTAGAAATATTCTAATTT
>Xaut_4192(hmuT) Score=4.6 Pos=-56 [Xanthobacter autotrophicus Py2]
AACTTTGAAAAAATCAAAACT
>Xaut_3198(ftr1) Score=4.8 Pos=-125 [Xanthobacter autotrophicus Py2]
GTTTTGGAAATGTTCAAATCT
# TF - NtrC: Xaut_4399
>Xaut_4660(dppA) Score=4.9 Pos=-159 [Xanthobacter autotrophicus Py2]
TGCGTAATTATTGTGCA
>Xaut_2504(nrtA) Score=3.8 Pos=-312 [Xanthobacter autotrophicus Py2]
CGCACAATTTGAATGCA
>Xaut_2504(nrtA) Score=4.4 Pos=-252 [Xanthobacter autotrophicus Py2]
CGCCCAAATTTTCATCA
>Xaut_1084(nrtA) Score=3.9 Pos=-292 [Xanthobacter autotrophicus Py2]
TGCCCAATCCATAAGCT
>Xaut_1084(nrtA) Score=4.6 Pos=-270 [Xanthobacter autotrophicus Py2]
TGCATATTTTTTGTGCG
>Xaut_4149(urtA) Score=3.8 Pos=-331 [Xanthobacter autotrophicus Py2]
TGCCCTCAAAATAGGCA
>Xaut_2209(glnK) Score=4.7 Pos=-244 [Xanthobacter autotrophicus Py2]
AGATCAATAATTAGGCA
>Xaut_1227(uctA) Score=4.8 Pos=-300 [Xanthobacter autotrophicus Py2]
TGCTTAAATTTTGATCG
>Xaut_4401(nifR3) Score=3.8 Pos=-39 [Xanthobacter autotrophicus Py2]
TGTCTAAGATGTAGGCA
>Xaut_3586(glnB) Score=4.2 Pos=-138 [Xanthobacter autotrophicus Py2]
AGCCTATTTCATGAGCA
# TF - Mur: Xaut_1820
>Xaut_1207(sitA) Score=5.4 Pos=-90 [Xanthobacter autotrophicus Py2]
AATGCGAATAAGTTGCAAT
>Xaut_1207(sitA) Score=4.8 Pos=-51 [Xanthobacter autotrophicus Py2]
TTTGCAAATGGATCGCAAA
# TF - ModE: Xaut_3199
>Xaut_3202(modA) Score=4.2 Pos=-38 [Xanthobacter autotrophicus Py2]
GCTGTATATGAACGAGCATACC
# TF - LexA: Xaut_4371
>Xaut_4080(recA) Score=1.6 Pos=-62 [Xanthobacter autotrophicus Py2]
GAACAAAGCATGTAC
>Xaut_4080(recA) Score=1.6 Pos=-80 [Xanthobacter autotrophicus Py2]
GAACATATTGCGAAC
>Xaut_4371(lexA) Score=5.2 Pos=-51 [Xanthobacter autotrophicus Py2]
GTTCATGATTTGTTT
>Xaut_4315(uvrA) Score=5.2 Pos=-291 [Xanthobacter autotrophicus Py2]
GTTCCTGATATGTTC
>Xaut_0335(yifB) Score=4.8 Pos=-75 [Xanthobacter autotrophicus Py2]
GTTCCGCTTTCGTTC
>Xaut_3306(rmuC) Score=4.9 Pos=-42 [Xanthobacter autotrophicus Py2]
GTTCGCTGTTTGTTC
>Xaut_1946(PF04055) Score=5.4 Pos=-40 [Xanthobacter autotrophicus Py2]
GTTCTTGTTTCGTTC
>Xaut_4371(lexA) Score=1.1 Pos=-77 [Xanthobacter autotrophicus Py2]
GAACACAAAAGGAAC
>Xaut_0810(imuA) Score=0.8 Pos=-63 [Xanthobacter autotrophicus Py2]
GAACAAATAAAGAAC
>Xaut_4757(parE) Score=4.6 Pos=-108 [Xanthobacter autotrophicus Py2]
GTTTCCGTTCTGTTC
>Xaut_3470(imuA) Score=0.7 Pos=-18 [Xanthobacter autotrophicus Py2]
GAACAAAAGAGGAAC
>Xaut_4316(ssb) Score=1.7 Pos=-151 [Xanthobacter autotrophicus Py2]
GAACACATCATGAAC
>Xaut_4316(ssb) Score=1.2 Pos=-252 [Xanthobacter autotrophicus Py2]
GAACATATCAGGAAC
# TF - PhnF: Xaut_1317
>Xaut_1316(phnG) Score=5.6 Pos=-104 [Xanthobacter autotrophicus Py2]
TTGTCTATTTGTCTAGACTA
>Xaut_1317(phnF) Score=5.5 Pos=-47 [Xanthobacter autotrophicus Py2]
TAGTCTAGACAAATAGACAA
# TF - PaaR: Xaut_0894
>Xaut_0903(paaF) Score=6.2 Pos=-60 [Xanthobacter autotrophicus Py2]
ATTAACCGATCGATCGGTTAAT
>Xaut_0904(paaZ) Score=6.2 Pos=-166 [Xanthobacter autotrophicus Py2]
ATTAACCGATCGATCGGTTAAT
>Xaut_0894(paaR) Score=6.7 Pos=-118 [Xanthobacter autotrophicus Py2]
ATTGACCGACCGGATGGTCAAT
>Xaut_0893(livK) Score=5.3 Pos=-175 [Xanthobacter autotrophicus Py2]
ATTGTCCGTCTGGTCGATCAAT
>Xaut_0893(livK) Score=6.7 Pos=-117 [Xanthobacter autotrophicus Py2]
ATTGACCATCCGGTCGGTCAAT
>Xaut_0894(paaR) Score=5.3 Pos=-60 [Xanthobacter autotrophicus Py2]
ATTGATCGACCAGACGGACAAT
# RNA - Cobalamin
>Xaut_3774(cbtB) Score=121.8 Pos=-243 [Xanthobacter autotrophicus Py2]
ATAGTCGTCCCGTCGTCGGTGTTCGCTTTCGGGCGGACCAAGAGGGAATGCGGTGCGGGAGTTTCTCCCAAAGCCGCGGCTGCCCCCGCAACTGTCGGCGGTGAGCGGGCCTGCAACATGCCACTGGAGCAATCCGGGAAGGCGCAGGCTTCGCAATGACCCGCGAGCCAGGAGACCTGCCGGCGACATCCTGCCCGTTCA
>Xaut_3288(cfrX) Score=113 Pos=-280 [Xanthobacter autotrophicus Py2]
CTTTAGTGCCCCTGTCGAAGGTCCCGTGGTCCCACACGGGCGCAAAAGGGAATGCGGTGCGGGAGGTCTCTCCCAATGCCGCGGCTGCCCCCGCAACTGTAAGCGGTGAGCCCCTGCCACATGCCACTGTCGCCGCAAGGCGCCGGGAAGGCGGTGGGGGCGCTGATCCGCGAGCCAGGAGACCTGCCTTCGACAAGGTCCGCGCC
>Xaut_0420(cbtC) Score=89.9 Pos=-264 [Xanthobacter autotrophicus Py2]
CTGCTGCAAAGGCACATGGTTTTCCATCGGCGCGCGGCGACGCGCTTCGATGGATCTGGGAACGGGGAAGGGCCTGACCGCCCGAAGCCCCGACCGCCCCCGCGACTGTGAGCGGCGAGTGGCCTTCCACGATGCCACTGGACCTGAGCCTTTCGAGGCCGGGTCTGGGAAGGCGGATGGTTGCGACGACCCGCAAGTCAGGAGACCGACCATGGGCATGTGTTCACCCTC
# RNA - mini-ykkC
>Xaut_1224(amt1) Score=36.7 Pos=-79 [Xanthobacter autotrophicus Py2]
CAGGCCGGGACGACCCGGCCATTCCCTCGGGACCCGGCCGGGACGACCCGG
# RNA - TPP
>Xaut_3515(thiC) Score=56.2 Pos=-213 [Xanthobacter autotrophicus Py2]
AACGTTCCAAGGGGGGTCCCGGAAGGGGCTGAGATTTCGCAAGTCCGTTGGCCTTCAAGGTTTTCGGTGCCGCGTTGACCCTTCGAACCTGATCCGGGTCATACCGGCGAAGGGATCGGAACCCGTGCGCACGGC
>Xaut_2223(thiO) Score=48.5 Pos=-85 [Xanthobacter autotrophicus Py2]
AACGGCCTGGGGTGCCACGCATCATGCGCGGCTGAGATCACACCCATCGAACCTGTCTGGGTCATTCCAGCGTAGGGAGACGCCGATGAGCGCCAGC
# RNA - serC
>Xaut_1203(serC) Score=62.1 Pos=-53 [Xanthobacter autotrophicus Py2]
TCCGTGGGACACCTCCCCCCAACGGGAGGCGCCCATCTGTAAGGATGGACCAC
# RNA - speF
>Xaut_2140(speF) Score=111.2 Pos=-495 [Xanthobacter autotrophicus Py2]
CTTTGCCCAAATTCGCACGTGCCTGTGGTCGCGTGTCGGTCGGTAGGATCTCCGGACAAGAGGCCGGAAAGCTGCCAGGACGACCGATAGCCGGAGGGAACCGGCCCACCCCGCTCCTCATGCGGGGGACGTGACTTGAAGCAACGACGTAAGGGCTTTTTTGGTCTCGGTCACCCCTCCAAAGGGCGACGTTACTGAAGAGGCACTACATCTTGCCGGCCGTGCGGAGCGGGAATCCCTCTCCAATCGTGCGCAGTTGTCTCGCCCGCGCCTGGCTCATTGCCCGGTGGGCGGTTCATCTG
# RNA - yybP-ykoY
>Xaut_4096(COG1971) Score=33.9 Pos=-174 [Xanthobacter autotrophicus Py2]
TCCCCCTCTCATCGGGGAGTAGCCACCGCCCGCGGGCGGGGCCGTGCCAACAGGCTTGCGCAAGGCGCGCATGGCACGGCCAGCCGAATCATCGGCCCGGCGAGACCGTGCACCACCC
# RNA - Glycine
>Xaut_2201(gcvT) Score=48.2 Pos=-314 [Xanthobacter autotrophicus Py2]
GACGATCCCTGCGGGAGAGACCGGCGGCCGCAAGGTACGCCGGCGCCGAAGGCGCAACCGCCCCGGAACCGCTCAGGCCCAAGGACCGCAGGGGGACG
>Xaut_2201(gcvT) Score=38.3 Pos=-216 [Xanthobacter autotrophicus Py2]
AATCTCTGGAAAGCAGCGCCGGTGCTGCGCGGCAACGCGCATCTTCGGCGCTCACCGAAGGAGTAAGCCGTGCCCTTCCACGAGGCGCGGTGAAATCTCTCAGGTCCTAAGACAGAGGG
# RNA - SAM_alpha
>Xaut_0471(metY) Score=64.1 Pos=-162 [Xanthobacter autotrophicus Py2]
GCCGCTCACTCGTGGTGAATTTGAGCCGGCCCGCTTGCAGCCACGTTAAACAACCTTGCTAAAAGGCCGGGGACGAACAGAC
# RNA - ykkC-yxkD
>Xaut_1227(uctB) Score=69.8 Pos=-184 [Xanthobacter autotrophicus Py2]
ACGAGTTGGTGGCTAGGGTTCCGGCATCCCGCGGGATGTGCTGGTCCGAGAGCTGCCACTGCTCCGGGAGACATCCGGGGCGGGTGCACGGCGGGATAAAAGCCCGGGAGAC
# TF - NifA: Xaut_0082
>Xaut_0088(nifH) Score=4.5 Pos=-358 [Xanthobacter autotrophicus Py2]
CGTCGAACTTGCGACA
>Xaut_0149(iscN) Score=5.5 Pos=-122 [Xanthobacter autotrophicus Py2]
TGTCGCATTCGCGACA
>Xaut_0143(nifH) Score=4.3 Pos=-271 [Xanthobacter autotrophicus Py2]
TGTCGCGTTCGACACA
>Xaut_0142(fixB) Score=4.2 Pos=-262 [Xanthobacter autotrophicus Py2]
CGTCGCAATTGTGACG
>Xaut_0142(fixB) Score=5.2 Pos=-180 [Xanthobacter autotrophicus Py2]
TGTCGCCTTCCTGACA
>Xaut_0111(nifB) Score=4.1 Pos=-284 [Xanthobacter autotrophicus Py2]
TGTCCCCGTGGGGACA
>Xaut_0082(nifA) Score=4.1 Pos=-56 [Xanthobacter autotrophicus Py2]
TGTCGCTAATCATACA
>Xaut_0083(fdxN) Score=5.3 Pos=-148 [Xanthobacter autotrophicus Py2]
TGTCGCACTTGCGACA
>Xaut_2332(fer2) Score=3.6 Pos=-163 [Xanthobacter autotrophicus Py2]
TGTCGCTTTCCCGCCC
>Xaut_0124(bolA) Score=5.1 Pos=-103 [Xanthobacter autotrophicus Py2]
TGTCTCCTTTGCGACA
>Xaut_0111(nifB) Score=4.2 Pos=-141 [Xanthobacter autotrophicus Py2]
TGTTGTTAAGCCGACA
>Xaut_0106(iscN) Score=4.1 Pos=-115 [Xanthobacter autotrophicus Py2]
CGTCGCAAAGACAACA
>Xaut_0106(iscN) Score=4.4 Pos=-133 [Xanthobacter autotrophicus Py2]
TGTCCGGAATCGGACA
>Xaut_0088(nifH) Score=4.2 Pos=-233 [Xanthobacter autotrophicus Py2]
TGTCGGGTTCTGAACA
>Xaut_0125(xdhC) Score=5.1 Pos=-74 [Xanthobacter autotrophicus Py2]
TGTCGCAAAGGAGACA
>Xaut_0143(nifH) Score=4.3 Pos=-301 [Xanthobacter autotrophicus Py2]
TGTTTTAATCCCGACA
# TF - PckR: Xaut_1177
>Xaut_1176(gnd) Score=4.6 Pos=-56 [Xanthobacter autotrophicus Py2]
CATGTTAAACGATTTAACGG
>Xaut_2843(pckA) Score=4.3 Pos=-127 [Xanthobacter autotrophicus Py2]
GCCTTCAATCGGTTAGAGAG
>Xaut_1698(edd) Score=5 Pos=-95 [Xanthobacter autotrophicus Py2]
GGATCAAATCGATTTGATCG
>Xaut_1177(pckR) Score=4.6 Pos=-69 [Xanthobacter autotrophicus Py2]
CCGTTAAATCGTTTAACATG
>Xaut_0504(hpr) Score=5.4 Pos=-151 [Xanthobacter autotrophicus Py2]
AATTTAAAACGATTGAACTT
# TF - HrcA: Xaut_2534
>Xaut_4265(groS) Score=6.8 Pos=-138 [Xanthobacter autotrophicus Py2]
CTAGCACTCCACATCCGCGAGTGCTAA
>Xaut_1165(groS) Score=6.6 Pos=-71 [Xanthobacter autotrophicus Py2]
TTGGCACTCCACCTTGGAGAGTGCCAG
# TF - GntR: Xaut_1236
>Xaut_1235(gntK) Score=5.8 Pos=-204 [Xanthobacter autotrophicus Py2]
ATAAGATAACGCTATCTTGA
>Xaut_1234(gntT) Score=6.6 Pos=-124 [Xanthobacter autotrophicus Py2]
GCGAGATAGCGCTATCTCAC
>Xaut_1236(gntR) Score=6.3 Pos=-161 [Xanthobacter autotrophicus Py2]
CTGAGATAGCGCTGTCTTTC
>Xaut_1235(gntK) Score=6.3 Pos=-61 [Xanthobacter autotrophicus Py2]
GAAAGACAGCGCTATCTCAG
# TF - SMb20667: Xaut_1029
>Xaut_1029(SMb20667) Score=6.4 Pos=-155 [Xanthobacter autotrophicus Py2]
AAATGGTAGCGCTGCCAAAA
>Xaut_1029(SMb20667) Score=6.1 Pos=-210 [Xanthobacter autotrophicus Py2]
GCATGGCAGCGCTGCCATCA
>Xaut_1029(SMb20667) Score=6.2 Pos=-178 [Xanthobacter autotrophicus Py2]
CAGTGGCAGCGCTGCCAAAC
>Xaut_1028(COG2271) Score=6.4 Pos=-131 [Xanthobacter autotrophicus Py2]
TTTTGGCAGCGCTACCATTT
>Xaut_1028(COG2271) Score=6.2 Pos=-108 [Xanthobacter autotrophicus Py2]
GTTTGGCAGCGCTGCCACTG
>Xaut_1028(COG2271) Score=6.1 Pos=-76 [Xanthobacter autotrophicus Py2]
TGATGGCAGCGCTGCCATGC
# TF - SoxR: Xaut_1053
>Xaut_1054 Score=5.6 Pos=-145 [Xanthobacter autotrophicus Py2]
ACCTAAACCATACTCGAGGT
>Xaut_1053(soxR) Score=5.6 Pos=26 [Xanthobacter autotrophicus Py2]
ACCTCGAGTATGGTTTAGGT
# TF - CadR-PbrR: Xaut_3979, Xaut_3339, Xaut_2900, Xaut_0800
>Xaut_3978(cadA) Score=6 Pos=-28 [Xanthobacter autotrophicus Py2]
CTCCTCTAGTGACTAGAGTAT
>Xaut_3338(cadA) Score=6 Pos=-28 [Xanthobacter autotrophicus Py2]
CTCCTCTAGTGACTAGAGTAT
# TF - IdnR: Xaut_2434
>Xaut_2437(idnO) Score=5.7 Pos=-83 [Xanthobacter autotrophicus Py2]
TCATGTTACCGATATCATGA
>Xaut_2436(idnD) Score=5.7 Pos=-81 [Xanthobacter autotrophicus Py2]
TCATGATATCGGTAACATGA
# TF - MdcY: Xaut_0520
>Xaut_0520(mdcY) Score=4.6 Pos=-70 [Xanthobacter autotrophicus Py2]
TTGTATGCAA
>Xaut_0519(matA) Score=4.6 Pos=-235 [Xanthobacter autotrophicus Py2]
TTGCATACAA
# TF - FnrN/FixK/AadR: Xaut_1746
>Xaut_0459(ccoN) Score=5.2 Pos=-97 [Xanthobacter autotrophicus Py2]
GCTTTGACCTGTATCAAGGA
>Xaut_3275(bsr3073) Score=4.3 Pos=-72 [Xanthobacter autotrophicus Py2]
CAGTTGATCGTTGTCAAAAG
>Xaut_2126(hemA) Score=4.4 Pos=-108 [Xanthobacter autotrophicus Py2]
CTCTTGATTGGTATCAATAC
>Xaut_0669(adhP) Score=5.1 Pos=-107 [Xanthobacter autotrophicus Py2]
CGGTTGACCCGCATCAATGC
>Xaut_1968(ompW) Score=4.9 Pos=-87 [Xanthobacter autotrophicus Py2]
AAATTGACATAAATCAAACT
# TF - YrdX2: Xaut_0414
>Xaut_0415(COG5349) Score=9 Pos=4 [Xanthobacter autotrophicus Py2]
ACGCATACAAT------ATTGTATGCGT
>Xaut_0414 Score=8.3 Pos=-41 [Xanthobacter autotrophicus Py2]
TTGCGTACAAT------ATTGTATGGCT
>Xaut_1506(COG1171 (IlvA)) Score=7.9 Pos=-75 [Xanthobacter autotrophicus Py2]
GTTCATACAGG------TTTGTATGCAT
# TF - FixJ: Xaut_1745
>Xaut_1746(fixK) Score=4.6 Pos=-104 [Xanthobacter autotrophicus Py2]
CTCCGTAAAACTACTTAA
>Xaut_1746(fixK) Score=4.5 Pos=-90 [Xanthobacter autotrophicus Py2]
TTAAGGGCACCGACTTAA
# TF - Bll2166: Xaut_1542
>Xaut_1541(blr2167) Score=5.4 Pos=-1 [Xanthobacter autotrophicus Py2]
GATGAACCCAGTTCACC
>Xaut_1542(bll2166) Score=5.4 Pos=-27 [Xanthobacter autotrophicus Py2]
GGTGAACTGGGTTCATC